SFJ218
Library SF
(Link to library)
Clone ID SFJ218
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13936-1
Original site URL
Representative seq. ID SFJ218P
(Link to Original site)
Representative DNA sequence
>SFJ218 (SFJ218Q) /CSM/SF/SFJ2-A/SFJ218Q.Seq.d/
AACACCACACATTAAAACTTTATATATAACAATATACATATATATATATATATATATAAA
AGAAAAAAATAAAAAAAAATGAGTGAAATTCAACCAAAAACAGAAGTTCCACCAAAAACA
GTTGAAGAAGAAGAGGAATCAGATGATGAAGAAGATAACACAAAAGTAACTGANGGAGGT
AATCCAACAGGTGGCGAAGGTGCAGCAAAAAAAAAGAAAAAGAAAAATAAAAAGAAGAAG
ANGGCAGCACCAGTTGCAAGTGCAGCAGATATTATTGATTCTAAACCAATTCCATCTGGT
TTAGTTCAAACTAATCCACCAACTATTCCAGTTTCAAAACAATTTTCAAATGGNGTTTAC
CCAATGGGTGAAATTCAAGAATATAGAGATAGTAATTCATATCGNACAACATCAGAAGAA
AAAAGATTAGAAGAACGTATTCATGCAAATATTTATAATGATGTACGTAGAGCAGCAGAA
GTACATCGTCAAGTTAGAAAGTATGTTCAAGGTATTGTTAAACCAGXXXXXXXXXXATAA
ATTAAAAGATGCAGTACGTGAAAGCCACCAACCACTGGTATCTATCACGCTGGGTATTGA
TGCACGTCTCCGGTGAGATTGGTGCTGCAATCCAAGAGGTTATGGAATCCCACGAAATCG
AACTCAATGGTAAAACCTACCCAATTCGTTCCATTCGTAATTTGAATGGTCATTCAATTC
GTCCATACGTCATTCATGGTGGTAAAACCGTACCAATCGTTAGAGGTGGTGAAATGACAA
AAATGGAAGAAGGTGAATTTTATGCAATCGAAACTTTTGGTTCCACTGGTAGAGCTCAAG
TCATTGAGGATTTGGAATGTTCTCATTATATGAAAACCGATTATCAAACCACTGTTAGAT
TACCAAAAGCAAAACAACTCTTACAATATATCAACAAAAATTATGATACCCTTTGTTTCT
GTCGTCGTTGGTTAGATAGAGCAGGTGAAGATAAACATATATTGGNTTTAAATAATCTTT
GTGATTTAGGTATCATTCAACGTCATGCACCATTAGTTNATTCAAAAGGTTCTTATGTTG
CTCAATATGAACATACTTTATTATTAAAACCAACTGCGAAAGAAGTTTTATCAAGAGG
sequence update 2001. 6. 1
Translated Amino Acid sequence
ntth*nfiynnihiyiyiykrkk*KKMSEIQPKTEVPPKTVEEEEESDDEEDNTKVTXGG
NPTGGEGAAKKKKKKNKKKKXAAPVASAADIIDSKPIPSGLVQTNPPTIPVSKQFSNGVY
PMGEIQEYRDSNSYRTTSEEKRLEERIHANIYNDVRRAAEVHRQVRKYVQGIVKP---

---KLKDAVRESHQPLVSITLGIDARLR*dwccnprgygiprnrtqw*nlpnsfhs*few
sfnssirhsww*nrtnr*rw*ndkngrr*ilcnrnfwfhw*sssh*gfgmfslyenrlsn
hc*itkskttltiyqqkl*yplflsslvr*sr*r*tyigfk*sl*fryhstsctisxfkr
flccsi*tyfiiktncersfikr


Translated Amino Acid sequence (All Frames)
Frame A:
ntth*nfiynnihiyiyiykrkk*KKMSEIQPKTEVPPKTVEEEEESDDEEDNTKVTXGG
NPTGGEGAAKKKKKKNKKKKXAAPVASAADIIDSKPIPSGLVQTNPPTIPVSKQFSNGVY
PMGEIQEYRDSNSYRTTSEEKRLEERIHANIYNDVRRAAEVHRQVRKYVQGIVKP---

---in*kmqyvkatnhwylsrwvlmhvsgeigaaiqevmesheielngktypirsirnln
ghsirpyvihggktvpivrggemtkmeegefyaietfgstgraqviedlecshymktdyq
ttvrlpkakqllqyinknydtlcfcrrwldragedkhilxlnnlcdlgiiqrhaplvxsk
gsyvaqyehtlllkptakevlsr

Frame B:
tphiktlyitiyiyiyiyikeknkkk*vkfnqkqkfhqkqlkkkrnqmmkkitqk*lxev
iqqvakvqqkkrkrkikrrrxqhqlqvqqillilnqfhlv*fklihqlfqfqnnfqmxft
qwvkfknieivihixqhqkkkd*knvfmqifimmyveqqkyivklesmfkvllnq---

---*ikrcst*kppttgiyhagy*ctspvrlvlqskrlwnptksnsmvkptqfvpfvi*m
viqfvhtsfmvvkpyqslevvk*qkwkkvnfmqskllvplvelkslriwnvlii*kpiik
plldyqkqnnsynistkimipfvsvvvg*ieqvkiniywx*iifvi*vsfnvmhh*xiqk
vlmllnmnilyy*nqlrkkfyqe

Frame C:
hhtlklyi*qytyiyiyi*kkkikkne*nstknrsstkns*rrrgir**rr*hksn*xr*
snrwrrcskkkekek*keexgstsckcsryy*f*tnsiwfssn*stnyssfktifkwxlp
ng*nsri*r**fisxnirrkkirrtysckyl**ct*ssrstsss*kvcsryc*t---

---KLKDAVRESHQPLVSITLGIDARLR*dwccnprgygiprnrtqw*nlpnsfhs*few
sfnssirhsww*nrtnr*rw*ndkngrr*ilcnrnfwfhw*sssh*gfgmfslyenrlsn
hc*itkskttltiyqqkl*yplflsslvr*sr*r*tyigfk*sl*fryhstsctisxfkr
flccsi*tyfiiktncersfikr

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SFJ218 (SFJ218Q) /CSM/SF/SFJ2-A/SFJ218Q.Seq.d/ 1705 0.0
CFJ114 (CFJ114Q) /CSM/CF/CFJ1-A/CFJ114Q.Seq.d/ 1130 0.0
VFL742 (VFL742Q) /CSM/VF/VFL7-B/VFL742Q.Seq.d/ 1126 0.0
SFI474 (SFI474Q) /CSM/SF/SFI4-D/SFI474Q.Seq.d/ 1118 0.0
SSF817 (SSF817Q) /CSM/SS/SSF8-A/SSF817Q.Seq.d/ 1110 0.0
SLH323 (SLH323Q) /CSM/SL/SLH3-A/SLH323Q.Seq.d/ 1110 0.0
AFH627 (AFH627Q) /CSM/AF/AFH6-B/AFH627Q.Seq.d/ 1110 0.0
VFI271 (VFI271Q) /CSM/VF/VFI2-C/VFI271Q.Seq.d/ 1108 0.0
AFL569 (AFL569Q) /CSM/AF/AFL5-C/AFL569Q.Seq.d/ 1108 0.0
AFN321 (AFN321Q) /CSM/AF/AFN3-A/AFN321Q.Seq.d/ 1104 0.0

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

CF211492|CF211492.1 CAB20007_Ia_Ra_H10 Cabernet Sauvignon Flower bloom - CAB2 Vitisvinifera cDNA clone CAB20007_Ia_Ra_H10 3', mRNA sequence. 64 1e-14 2
AX506512|AX506512.1 Sequence 1207 from Patent WO0216655. 50 5e-12 4
AX412771|AX412771.1 Sequence 535 from Patent WO0222675. 50 5e-12 4
BT006476|BT006476.1 Arabidopsis thaliana At2g44180 gene, complete cds. 50 5e-12 4
AF250964|AF250964.1 Arabidopsis thaliana methionine aminopeptidase-like protein mRNA, complete cds. 50 7e-12 4
BM534961|BM534961.1 EST587983 tomato breaker fruit Lycopersicon esculentum cDNA clone cLEG64G9 5' end, mRNA sequence. 52 3e-11 3
BI516879|BI516879.1 BB160023B20D07 Bee Brain Normalized Library, BB16 Apis mellifera cDNA clone BB160023B20D07 5', mRNA sequence. 46 6e-11 4
CA147281|CA147281.1 SCCCRZ1C02E07.g RZ1 Saccharum officinarum cDNA clone SCCCRZ1C02E07 5', mRNA sequence. 56 1e-10 2
CA223831|CA223831.1 SCJFFL1C05E06.g FL1 Saccharum officinarum cDNA clone SCJFFL1C05E06 5', mRNA sequence. 56 1e-09 3
CF049060|CF049060.1 QCL30c12.yg QCL Zea mays cDNA clone QCL30c12, mRNA sequence. 52 1e-09 2
dna update 2004. 1. 5
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

EU967449_1(EU967449|pid:none) Zea mays clone 303197 methionine a... 243 9e-63
BC043889_1(BC043889|pid:none) Xenopus laevis methionine aminopep... 242 1e-62
AJ720769_1(AJ720769|pid:none) Gallus gallus mRNA for hypothetica... 242 2e-62
BC070892_1(BC070892|pid:none) Rattus norvegicus methionyl aminop... 240 6e-62
AK165845_1(AK165845|pid:none) Mus musculus lung RCB-0558 LLC cDN... 240 6e-62
(O08663) RecName: Full=Methionine aminopeptidase 2; Sho... 240 6e-62
BC091150_1(BC091150|pid:none) Rattus norvegicus methionyl aminop... 240 6e-62
BC122516_1(BC122516|pid:none) Xenopus laevis hypothetical protei... 238 3e-61
BC073553_1(BC073553|pid:none) Xenopus laevis hypothetical protei... 238 3e-61
BT072460_1(BT072460|pid:none) Salmo salar clone ssal-rgf-526-141... 238 3e-61
protein update 2009. 5.26
PSORT

psg: 0.56 gvh: 0.27 alm: 0.51 top: 0.53 tms: 0.00 mit: 0.25 mip: 0.00
nuc: 0.16 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

68.0 %: nuclear
16.0 %: cytoplasmic
4.0 %: cytoskeletal
4.0 %: vacuolar
4.0 %: plasma membrane
4.0 %: vesicles of secretory system

>> prediction for SFJ218 is nuc

5' end seq. ID SFJ218F
5' end seq.
>SFJ218F.Seq
AACACCACACATTAAAACTTTATATATAACAATATACATATATATATATATATATATAAA
AGAAAAAAATAAAAAAAAATGAGTGAAATTCAACCAAAAACAGAAGTTCCACCAAAAACA
GTTGAAGAAGAAGAGGAATCAGATGATGAAGAAGATAACACAAAAGTAACTGANGGAGGT
AATCCAACAGGTGGCGAAGGTGCAGCAAAAAAAAAGAAAAAGAAAAATAAAAAGAAGAAG
ANGGCAGCACCAGTTGCAAGTGCAGCAGATATTATTGATTCTAAACCAATTCCATCTGGT
TTAGTTCAAACTAATCCACCAACTATTCCAGTTTCAAAACAATTTTCAAATGGNGTTTAC
CCAATGGGTGAAATTCAAGAATATAGAGATAGTAATTCATATCGNACAACATCAGAAGAA
AAAAGATTAGAAGAACGTATTCATGCAAATATTTATAATGATGTACGTAGAGCAGCAGAA
GTACATCGTCAAGTTAGAAAGTATGTTCAAGGTATTGTTAAACCAG----------
Length of 5' end seq. 526
3' end seq. ID SFJ218Z
3' end seq.
>SFJ218Z.Seq
----------ATAAATTAAAAGATGCAGTACGTGAAAGCCACCAACCACTGGTATCTATC
ACGCTGGGTATTGATGCACGTCTCCGGTGAGATTGGTGCTGCAATCCAAGAGGTTATGGA
ATCCCACGAAATCGAACTCAATGGTAAAACCTACCCAATTCGTTCCATTCGTAATTTGAA
TGGTCATTCAATTCGTCCATACGTCATTCATGGTGGTAAAACCGTACCAATCGTTAGAGG
TGGTGAAATGACAAAAATGGAAGAAGGTGAATTTTATGCAATCGAAACTTTTGGTTCCAC
TGGTAGAGCTCAAGTCATTGAGGATTTGGAATGTTCTCATTATATGAAAACCGATTATCA
AACCACTGTTAGATTACCAAAAGCAAAACAACTCTTACAATATATCAACAAAAATTATGA
TACCCTTTGTTTCTGTCGTCGTTGGTTAGATAGAGCAGGTGAAGATAAACATATATTGGN
TTTAAATAATCTTTGTGATTTAGGTATCATTCAACGTCATGCACCATTAGTTNATTCAAA
AGGTTCTTATGTTGCTCAATATGAACATACTTTATTATTAAAACCAACTGCGAAAGAAGT
TTTATCAAGAGG
Length of 3' end seq. 602
Connected seq. ID SFJ218P
Connected seq.
>SFJ218P.Seq
AACACCACACATTAAAACTTTATATATAACAATATACATATATATATATATATATATAAA
AGAAAAAAATAAAAAAAAATGAGTGAAATTCAACCAAAAACAGAAGTTCCACCAAAAACA
GTTGAAGAAGAAGAGGAATCAGATGATGAAGAAGATAACACAAAAGTAACTGANGGAGGT
AATCCAACAGGTGGCGAAGGTGCAGCAAAAAAAAAGAAAAAGAAAAATAAAAAGAAGAAG
ANGGCAGCACCAGTTGCAAGTGCAGCAGATATTATTGATTCTAAACCAATTCCATCTGGT
TTAGTTCAAACTAATCCACCAACTATTCCAGTTTCAAAACAATTTTCAAATGGNGTTTAC
CCAATGGGTGAAATTCAAGAATATAGAGATAGTAATTCATATCGNACAACATCAGAAGAA
AAAAGATTAGAAGAACGTATTCATGCAAATATTTATAATGATGTACGTAGAGCAGCAGAA
GTACATCGTCAAGTTAGAAAGTATGTTCAAGGTATTGTTAAACCAG----------ATAA
ATTAAAAGATGCAGTACGTGAAAGCCACCAACCACTGGTATCTATCACGCTGGGTATTGA
TGCACGTCTCCGGTGAGATTGGTGCTGCAATCCAAGAGGTTATGGAATCCCACGAAATCG
AACTCAATGGTAAAACCTACCCAATTCGTTCCATTCGTAATTTGAATGGTCATTCAATTC
GTCCATACGTCATTCATGGTGGTAAAACCGTACCAATCGTTAGAGGTGGTGAAATGACAA
AAATGGAAGAAGGTGAATTTTATGCAATCGAAACTTTTGGTTCCACTGGTAGAGCTCAAG
TCATTGAGGATTTGGAATGTTCTCATTATATGAAAACCGATTATCAAACCACTGTTAGAT
TACCAAAAGCAAAACAACTCTTACAATATATCAACAAAAATTATGATACCCTTTGTTTCT
GTCGTCGTTGGTTAGATAGAGCAGGTGAAGATAAACATATATTGGNTTTAAATAATCTTT
GTGATTTAGGTATCATTCAACGTCATGCACCATTAGTTNATTCAAAAGGTTCTTATGTTG
CTCAATATGAACATACTTTATTATTAAAACCAACTGCGAAAGAAGTTTTATCAAGAGG
Length of connected seq. 1128
Full length Seq ID -
Full length Seq. -
Length of full length seq. -