SFJ208 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

SFJ208
Library	SF (Link to library)
Clone ID	SFJ208 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U15456-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/SF/SFJ2-A/SFJ208Q.Seq.d/
Representative seq. ID	SFJ208P (Link to Original site)
Representative DNA sequence	>SFJ208 (SFJ208Q) /CSM/SF/SFJ2-A/SFJ208Q.Seq.d/ TTTAGCTACTATTGTTTTAGCTCAAGCTTTAACAGTACCATTAAACTTCCATCAAGCTTC AAGAGAATCTAGAAGAAGAGTTCCACAAAAATGGTCAAACAGATTATCTGCTCTCAATGC TGGTACCACAATCCCAATTTCAGATTTTGAAGATGCTCAATACTATGGTGCCATTACCAT TGGTACCCCAGGTCAAGCCTTCAAAGTAGTTTTCGATACTGGTTCATCCAACTTGTGGAT TCCATCAAAGAAATGTCCAATCACTGTTGTTGCATGTGATTTACATAACAAATATAACAG CGGTGCCTCAAGCACATATGTCGCCAACGGAACTGATTTCACCATCCAATACGGTAGTGG TGCTATGTCAGGTTTTGTCTCTCAAGATTCCGTCACTGTTGGTTCATTAACTGTTAAAGA TCAATTATTCGCTGAAGCCACTGCCGAACCAGGTATTGCTTTCGATTTCGCCAAATTCGA TGGTATTTTAGGTCTTGCTTTCCAATCCATCTCTGTTAATTCAATTCCACCAGTCTTTTA CAACATGTTATCACAAGXXXXXXXXXXATTCAATTCCACCAGTCTTTTACAACATGTTAT CACAAGGTTTAGTTTCATCAACACTCTTCTCCTTCTGGTTATCAAGAACTCCAGGTGCCA ACGGTGGTGAACTCTCATTCGGTTCAATCGATAACACCAAATACACTGGTGACATTACCT ACGTCCCATTAACCAACGAAACCTATTGGGAATTCGTTATGGATGACTTTGCTATCGATG GTCAATCAGCTGGTTTCTGTGGTACTACTTGTCACGCAATTTGCGATTCAGGTACATCAC TCATTGCTGGTCCAATGGCTGATATTACTGCCCTCAATGAAAAATTAGGTGCTGTCATCT TAAATGGTGAAGGTGTCTTCTCTGATTGTAGCGTTATCAACACCTTACCAAATGTTACCA TCACCGTTGCTGGTCGTGAATTTGTTTTAACTCCAAAAGAATACGTTTTAGAAGTTACTG AGTTCGGAAAGACTGAATGTTTGAGTGGATTTATGGGTATCGAGTTAAACATGGGAAATT TCTGGATCCTTGGTGATGTTTTCATCTCTGCTTACTATACTGTATTCGATTTTGGTAATA AACAAGTTGGTTTCGCAACTGCCATTCAAGGTTAAATTTTTTTAATTAATTTATATTTAA GATAGAAATAAAACTAAATAATAGAACAATATATGGCATTGTTTTTTTT
sequence update	2001. 6. 1
Translated Amino Acid sequence	LATIVLAQALTVPLNFHQASRESRRRVPQKWSNRLSALNAGTTIPISDFEDAQYYGAITI GTPGQAFKVVFDTGSSNLWIPSKKCPITVVACDLHNKYNSGASSTYVANGTDFTIQYGSG AMSGFVSQDSVTVGSLTVKDQLFAEATAEPGIAFDFAKFDGILGLAFQSISVNSIPPVFY NMLSQ--- ---SIPPVFYNMLSQGLVSSTLFSFWLSRTPGANGGELSFGSIDNTKYTGDITYVPLTNE TYWEFVMDDFAIDGQSAGFCGTTCHAICDSGTSLIAGPMADITALNEKLGAVILNGEGVF SDCSVINTLPNVTITVAGREFVLTPKEYVLEVTEFGKTECLSGFMGIELNMGNFWILGDV FISAYYTVFDFGNKQVGFATAIQGiflinlylrkniieqymalff
Translated Amino Acid sequence (All Frames)	Frame A: fsyycfsssfnstiklpssfkrikksstkmvkqiicsqcwyhnpnfrfrcsilwchyh wyprsslqssfrywfiqlvdsikemsnhcccmftqiqrclkhicrqrnfhhpirw cyvrfclsrfrhcwfincrsiirshcrtrycfrfrqirwyfrscfpihlcfnstsll qhvit--- ---iqfhqsfttcyhkvfhqhsspsgyqelqvptvvnshsvqsitpntlvtlptshpt kpignslwmtllsmvnqlvsvvllvtqfaiqvhhsllvqwlillpsmknvlssmvkvs slivalstpyqmlpspllvvnlflqkntfkllsserlnvvdlwvsstweisgslvm fsslltilysilvinklvsqlpfkvkffliyidrnktk*nniwhcff Frame B: LATIVLAQALTVPLNFHQASRESRRRVPQKWSNRLSALNAGTTIPISDFEDAQYYGAITI GTPGQAFKVVFDTGSSNLWIPSKKCPITVVACDLHNKYNSGASSTYVANGTDFTIQYGSG AMSGFVSQDSVTVGSLTVKDQLFAEATAEPGIAFDFAKFDGILGLAFQSISVNSIPPVFY NMLSQ--- ---fnstsllqhvitrfsfintllllviknsrcqrwtlirfnrhqihwhylrpinqr nllgiryglcyrwsiswflwyylsrnlrfryithcwsngyycpqkircchlkwrcl llryqhltkcyhhrcwsicfnskrirfrsyvrkdmfewiygyrvkhgkfldpwc fhlcllycirfw*tswfrnchsrlnffnfifkieiklnnrtiygivff Frame C: lllflklqyhtsiklqenleeefhkngqtdyllsmlvpqsqfqilkmlntmvplpl vpqvkpskfsilvhptcgfhqrnvqslllhviyitnitavpqahmsptelispsntvvv lcqvlslkipsllvhllkinyslkplpnqvllsispnsmvfvllsnpslliqfhqsft tcyhk--- ---SIPPVFYNMLSQGLVSSTLFSFWLSRTPGANGGELSFGSIDNTKYTGDITYVPLTNE TYWEFVMDDFAIDGQSAGFCGTTCHAICDSGTSLIAGPMADITALNEKLGAVILNGEGVF SDCSVINTLPNVTITVAGREFVLTPKEYVLEVTEFGKTECLSGFMGIELNMGNFWILGDV FISAYYTVFDFGNKQVGFATAIQGiflinlylrkn*iieqymalff
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value SFJ208 (SFJ208Q) /CSM/SF/SFJ2-A/SFJ208Q.Seq.d/ 2359 0.0 VFL410 (VFL410Q) /CSM/VF/VFL4-A/VFL410Q.Seq.d/ 1283 0.0 VFL274 (VFL274Q) /CSM/VF/VFL2-D/VFL274Q.Seq.d/ 1283 0.0 VFI870 (VFI870Q) /CSM/VF/VFI8-C/VFI870Q.Seq.d/ 1283 0.0 VFG845 (VFG845Q) /CSM/VF/VFG8-B/VFG845Q.Seq.d/ 1283 0.0 VFG815 (VFG815Q) /CSM/VF/VFG8-A/VFG815Q.Seq.d/ 1283 0.0 VFF604 (VFF604Q) /CSM/VF/VFF6-A/VFF604Q.Seq.d/ 1283 0.0 VFF141 (VFF141Q) /CSM/VF/VFF1-B/VFF141Q.Seq.d/ 1283 0.0 VFE111 (VFE111Q) /CSM/VF/VFE1-A/VFE111Q.Seq.d/ 1283 0.0 VFD849 (VFD849Q) /CSM/VF/VFD8-C/VFD849Q.Seq.d/ 1283 0.0
own update	2004.12.25
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N Y16962\|Y16962.1 Dictyostelium discoideum mRNA for cathepsin D. 1207 0.0 2 AJ243946\|AJ243946.1 Dictyostelium discoideum ctsD gene for cathepsin D, exons 1 to 2. 1207 0.0 2 E33916\|E33916.1 Candida boidinii strain with lowered protease activity and utilization thereof as host for producing foreign protein. 36 2e-06 5 AF076243\|AF076243.1 Arabidopsis thaliana BAC T26N6 from chromosome IV at 19.3 cM, complete sequence. 62 2e-05 3 AL161500\|AL161500.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 12. 62 2e-05 1 AF372974\|AF372974.1 Arabidopsis thaliana AT4g04460/T26N6_7 mRNA, complete cds. 62 2e-05 1 CB264640\|CB264640.1 48-E014661-035-002-P12-T7R MPIZ-ADIS-035 Arabidopsis thaliana cDNA clone MPIZp2000P122Q 5-PRIME, mRNA sequence. 62 2e-05 1 AX059531\|AX059531.1 Sequence 264 from Patent WO0055325. 62 2e-05 1 BE525959\|BE525959.1 M64C07STM Arabidopsis developing seed Arabidopsis thaliana cDNA clone 600034526R1 5', mRNA sequence. 62 2e-05 1 CD825453\|CD825453.1 BN25.060N03F011129 BN25 Brassica napus cDNA clone BN25060N03, mRNA sequence. 62 2e-05 1
dna update	2004. 1. 5
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value FJ168036_1(FJ168036\|pid:none) Fasciola hepatica cathepsin D-like... 194 3e-97 EF000001_1(EF000001\|pid:none) Fasciola hepatica cathepsin D-like... 188 7e-95 AF454831_1(AF454831\|pid:none) Apriona germari cathepsin D mRNA, ... 181 2e-90 AB078420_1(AB078420\|pid:none) Brugia malayi asp-2 mRNA for aspar... 187 4e-90 (P24268) RecName: Full=Cathepsin D; EC=3.4.23.5; Contai... 170 5e-84 BC154324_1(BC154324\|pid:none) Danio rerio zgc:63831, mRNA (cDNA ... 171 9e-83 BC056836_1(BC056836\|pid:none) Danio rerio zgc:63831, mRNA (cDNA ... 171 2e-82 (Q805F2) RecName: Full=Cathepsin E-B; EC=3.4.23.34; Fla... 167 3e-78 BT045103_1(BT045103\|pid:none) Salmo salar clone ssal-rgf-512-029... 167 4e-78 BC161297_1(BC161297\|pid:none) Xenopus tropicalis hypothetical pr... 168 5e-78
protein update	2009. 5.26
PSORT	psg: 0.87 gvh: 0.44 alm: 0.39 top: 0.77 tms: 0.00 mit: 0.33 mip: 0.07 nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.33 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 44.0 %: nuclear 32.0 %: cytoplasmic 12.0 %: mitochondrial 8.0 %: vacuolar 4.0 %: cytoskeletal >> prediction for SFJ208 is nuc
5' end seq. ID	SFJ208F
5' end seq.	>SFJ208F.Seq TTTAGCTACTATTGTTTTAGCTCAAGCTTTAACAGTACCATTAAACTTCCATCAAGCTTC AAGAGAATCTAGAAGAAGAGTTCCACAAAAATGGTCAAACAGATTATCTGCTCTCAATGC TGGTACCACAATCCCAATTTCAGATTTTGAAGATGCTCAATACTATGGTGCCATTACCAT TGGTACCCCAGGTCAAGCCTTCAAAGTAGTTTTCGATACTGGTTCATCCAACTTGTGGAT TCCATCAAAGAAATGTCCAATCACTGTTGTTGCATGTGATTTACATAACAAATATAACAG CGGTGCCTCAAGCACATATGTCGCCAACGGAACTGATTTCACCATCCAATACGGTAGTGG TGCTATGTCAGGTTTTGTCTCTCAAGATTCCGTCACTGTTGGTTCATTAACTGTTAAAGA TCAATTATTCGCTGAAGCCACTGCCGAACCAGGTATTGCTTTCGATTTCGCCAAATTCGA TGGTATTTTAGGTCTTGCTTTCCAATCCATCTCTGTTAATTCAATTCCACCAGTCTTTTA CAACATGTTATCACAAG----------
Length of 5' end seq.	557
3' end seq. ID	SFJ208Z
3' end seq.	>SFJ208Z.Seq ----------ATTCAATTCCACCAGTCTTTTACAACATGTTATCACAAGGTTTAGTTTCA TCAACACTCTTCTCCTTCTGGTTATCAAGAACTCCAGGTGCCAACGGTGGTGAACTCTCA TTCGGTTCAATCGATAACACCAAATACACTGGTGACATTACCTACGTCCCATTAACCAAC GAAACCTATTGGGAATTCGTTATGGATGACTTTGCTATCGATGGTCAATCAGCTGGTTTC TGTGGTACTACTTGTCACGCAATTTGCGATTCAGGTACATCACTCATTGCTGGTCCAATG GCTGATATTACTGCCCTCAATGAAAAATTAGGTGCTGTCATCTTAAATGGTGAAGGTGTC TTCTCTGATTGTAGCGTTATCAACACCTTACCAAATGTTACCATCACCGTTGCTGGTCGT GAATTTGTTTTAACTCCAAAAGAATACGTTTTAGAAGTTACTGAGTTCGGAAAGACTGAA TGTTTGAGTGGATTTATGGGTATCGAGTTAAACATGGGAAATTTCTGGATCCTTGGTGAT GTTTTCATCTCTGCTTACTATACTGTATTCGATTTTGGTAATAAACAAGTTGGTTTCGCA ACTGCCATTCAAGGTTAAATTTTTTTAATTAATTTATATTTAAGATAGAAATAAAACTAA ATAATAGAACAATATATGGCATTGTTTTTTTT
Length of 3' end seq.	682
Connected seq. ID	SFJ208P
Connected seq.	>SFJ208P.Seq TTTAGCTACTATTGTTTTAGCTCAAGCTTTAACAGTACCATTAAACTTCCATCAAGCTTC AAGAGAATCTAGAAGAAGAGTTCCACAAAAATGGTCAAACAGATTATCTGCTCTCAATGC TGGTACCACAATCCCAATTTCAGATTTTGAAGATGCTCAATACTATGGTGCCATTACCAT TGGTACCCCAGGTCAAGCCTTCAAAGTAGTTTTCGATACTGGTTCATCCAACTTGTGGAT TCCATCAAAGAAATGTCCAATCACTGTTGTTGCATGTGATTTACATAACAAATATAACAG CGGTGCCTCAAGCACATATGTCGCCAACGGAACTGATTTCACCATCCAATACGGTAGTGG TGCTATGTCAGGTTTTGTCTCTCAAGATTCCGTCACTGTTGGTTCATTAACTGTTAAAGA TCAATTATTCGCTGAAGCCACTGCCGAACCAGGTATTGCTTTCGATTTCGCCAAATTCGA TGGTATTTTAGGTCTTGCTTTCCAATCCATCTCTGTTAATTCAATTCCACCAGTCTTTTA CAACATGTTATCACAAG----------ATTCAATTCCACCAGTCTTTTACAACATGTTAT CACAAGGTTTAGTTTCATCAACACTCTTCTCCTTCTGGTTATCAAGAACTCCAGGTGCCA ACGGTGGTGAACTCTCATTCGGTTCAATCGATAACACCAAATACACTGGTGACATTACCT ACGTCCCATTAACCAACGAAACCTATTGGGAATTCGTTATGGATGACTTTGCTATCGATG GTCAATCAGCTGGTTTCTGTGGTACTACTTGTCACGCAATTTGCGATTCAGGTACATCAC TCATTGCTGGTCCAATGGCTGATATTACTGCCCTCAATGAAAAATTAGGTGCTGTCATCT TAAATGGTGAAGGTGTCTTCTCTGATTGTAGCGTTATCAACACCTTACCAAATGTTACCA TCACCGTTGCTGGTCGTGAATTTGTTTTAACTCCAAAAGAATACGTTTTAGAAGTTACTG AGTTCGGAAAGACTGAATGTTTGAGTGGATTTATGGGTATCGAGTTAAACATGGGAAATT TCTGGATCCTTGGTGATGTTTTCATCTCTGCTTACTATACTGTATTCGATTTTGGTAATA AACAAGTTGGTTTCGCAACTGCCATTCAAGGTTAAATTTTTTTAATTAATTTATATTTAA GATAGAAATAAAACTAAATAATAGAACAATATATGGCATTGTTTTTTTT
Length of connected seq.	1239
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas