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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFJ207
Library SF
(Link to library)
Clone ID SFJ207
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U15394-1
Original site URL
Representative seq. ID SFJ207E
(Link to Original site)
Representative DNA sequence 
>SFJ207 (SFJ207Q) /CSM/SF/SFJ2-A/SFJ207Q.Seq.d/
ACTCTTCAATTTTAATTCATCAAGTTTTTTATTTATTTATTTAAAAATGATAGAATTAAA
CATTGATTCATTTTTAGAAGAATTAAATAATTTAGAAAATATAACATCAACAAACACTAC
ACCAGTAAATAAATCAAATAGTAGTATTAAAAATAATAGTAATAACACAAATGTAGAATC
CTTTGATTTACCAAATTGGTATGTAAATCCTACAGGTTTATCAGCTCAACCTGAAATTAC
ACCAATTGCTCCTCAATCATCAATAATTTCACCAACCATTCCAAATAATTGTATCCAATT
ATTTAATTTTTCAGATAAAGAAGAAATATTATCAGATATAAGAAGAGAATATTTAGATTT
TTCAATTGAAAGTCATAAATTGAATGATGATGATGAACAAAAGAGACAATCATATTTAAT
ATGGCCAAGAAATATTGATACTGATAGTTGGGATTTTAAATTACTTGCAGAGCGTACATT
ATCAATTCCATGTTCAACAGTTGAATTGGTTATTGATAAGATTCAATATTCAATTTCAAT
TACAAACTATCATGAAGTTTTCTTAAATACTGAAAAAACTTCTTCAAATTCAACTTCATT
AGATAGACCATGGAGTAATTCAATATCAAAAGATAATTTTCATCGTGGTAATACTTCAAA
TTTACCATTTTTACCTGGCGGTATAAAATCACCTAATAACAATAGTANTAATAGTACTAA
TAATAATAATCANACACCAATTGATTGGGTACAATTTTGGCATTCAAAATCATTATTAGT
TNAACCACCTGGTTTAGATAATGGTATTTTAGATTTTAATGANAATATTAATAANCAAGA
TAACAANCAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACA
ACAACAAGAAAAGGAAAAAGAAGAAGAAGAAGAAGTTAATTTAAGATATACATTAAAAGA
TTTAGAAAGAGAAATTGAAGAAGAAAGAAAGAGAGAAGAAGCTGAGGAAGCTGAAGTTTA
TGAAGATGATGATCAAGAAGATGATTTAGATATTGAAGAAGAGGAATTGGATGAATTGGA
TGATATTGAAAAAACAAAGGAAGAAATTGATGATATTATTAAATCACCGCCTCAACCAAC
CTCATCATCATTATCAACTTCATCATCATCATCGTCAACAACATTAAAAGATAAAAATAA
AAT
sequence update 2001. 6. 9
Translated Amino Acid sequence 
LFNFNSSSFLFIYLKMIELNIDSFLEELNNLENITSTNTTPVNKSNSSIKNNSNNTNVES
FDLPNWYVNPTGLSAQPEITPIAPQSSIISPTIPNNCIQLFNFSDKEEILSDIRREYLDF
SIESHKLNDDDEQKRQSYLIWPRNIDTDSWDFKLLAERTLSIPCSTVELVIDKIQYSISI
TNYHEVFLNTEKTSSNSTSLDRPWSNSISKDNFHRGNTSNLPFLPGGIKSPNNNSXNSTN
NNNXTPIDWVQFWHSKSLLVXPPGLDNGILDFNXNINXQDNXQQQQQQQQQQQQQQQQQQ
QQEKEKEEEEEVNLRYTLKDLEREIEEERKREEAEEAEVYEDDDQEDDLDIEEEELDELD
DIEKTKEEIDDIIKSPPQPTSSSLSTSSSSSSTTLKDKNK
Translated Amino Acid sequence (All Frames) 
Frame A:
tlqf*fikffiylfkndrikh*fifrrik*frkyninkhytsk*ik**y*k****hkcri
l*ftklvcksyrfisst*nytncssiinnftnhsk*lypii*ffr*rrniirykkrifrf
fn*ks*ie****tketiifnmakky*y**lgf*itcrayiinsmfns*igy**dsifnfn
ykls*sflky*knffkfnfir*tme*fnikr*fssw*yfkftiftwrykit**q*x**y*
***sxtn*lgtilafkiiisxttwfr*wyfrf**xy**xr*qxttttttttttttttttt
ttrkgkrrrrrs*fkiyikrfrkrn*rrkkerrs*gs*sl*r**srr*fry*rrgig*ig
*y*knkgrn**yy*itastnliiiinfiiiivnnikr*k*n


Frame B:
LFNFNSSSFLFIYLKMIELNIDSFLEELNNLENITSTNTTPVNKSNSSIKNNSNNTNVES
FDLPNWYVNPTGLSAQPEITPIAPQSSIISPTIPNNCIQLFNFSDKEEILSDIRREYLDF
SIESHKLNDDDEQKRQSYLIWPRNIDTDSWDFKLLAERTLSIPCSTVELVIDKIQYSISI
TNYHEVFLNTEKTSSNSTSLDRPWSNSISKDNFHRGNTSNLPFLPGGIKSPNNNSXNSTN
NNNXTPIDWVQFWHSKSLLVXPPGLDNGILDFNXNINXQDNXQQQQQQQQQQQQQQQQQQ
QQEKEKEEEEEVNLRYTLKDLEREIEEERKREEAEEAEVYEDDDQEDDLDIEEEELDELD
DIEKTKEEIDDIIKSPPQPTSSSLSTSSSSSSTTLKDKNK


Frame C:
ssilihqvfylfi*k**n*tlihf*kn*ii*ki*hqqtlhq*inqivvlkiivitqm*np
liyqigm*ilqvyqlnlklhqlllnhq*fhqpfqiivsnylifqikkkyyqi*eeni*if
qlkvin*mmmmnkrdnhi*ygqeililivgilnylqsvhyqfhvqqlnwllirfniqfql
qtimkfs*ilkkllqiqlh*idhgviqyqkiifivvilqiyhfylav*nhlitivxivli
iiixhqligynfgiqnhy*xnhlv*imvf*ilmxilixkitxnnnnnnnnnnnnnnnnnn
nkkrkkkkkkkli*dih*ki*keklkkkerekklrklkfmkmmikkmi*ilkkrnwmnwm
ilkkqrkklmillnhrlnqphhhyqlhhhhrqqh*kikik
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFJ207 (SFJ207Q) /CSM/SF/SFJ2-A/SFJ207Q.Seq.d/                       1628   0.0
VSA177 (VSA177Q) /CSM/VS/VSA1-D/VSA177Q.Seq.d/                        440   e-122
VHM601 (VHM601Q) /CSM/VH/VHM6-A/VHM601Q.Seq.d/                         54   5e-06
SLI236 (SLI236Q) /CSM/SL/SLI2-B/SLI236Q.Seq.d/                         54   5e-06
SLA136 (SLA136Q) /CSM/SL/SLA1-B/SLA136Q.Seq.d/                         54   5e-06
VFE117 (VFE117Q) /CSM/VF/VFE1-A/VFE117Q.Seq.d/                         52   2e-05
SLD201 (SLD201Q) /CSM/SL/SLD2-A/SLD201Q.Seq.d/                         52   2e-05
SLC783 (SLC783Q) /CSM/SL/SLC7-D/SLC783Q.Seq.d/                         52   2e-05
SFL375 (SFL375Q) /CSM/SF/SFL3-D/SFL375Q.Seq.d/                         52   2e-05
VSE879 (VSE879Q) /CSM/VS/VSE8-D/VSE879Q.Seq.d/                         50   8e-05
own update 2002.10.11
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence.  1055   0.0    6
AL844507|AL844507.1 Plasmodium falciparum chromosome 8.            52   1e-20  10
AC116979|AC116979.2 Dictyostelium discoideum chromosome 2 map 6357117-6445670 strain AX4, complete sequence.    44   8e-18  11
AL929356|AL929356.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 2/5.    44   2e-17  14
AC116918|AC116918.3 Dictyostelium discoideum chromosome 2 map 6143698-6163521 strain AX4, complete sequence.    44   3e-17  13
AL929355|AL929355.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 1/5.    48   6e-17  17
AE014844|AE014844.1 Plasmodium falciparum 3D7 chromosome 12, section 1 of 9 of the complete sequence.    48   2e-16  17
AE014820|AE014820.1 Plasmodium falciparum 3D7 chromosome 14 section 5 of 13 of the complete sequence.    52   2e-16  16
AE014842|AE014842.1 Plasmodium falciparum 3D7 chromosome 11 section 7 of 8 of the complete sequence.    48   2e-16  16
AC116989|AC116989.2 Dictyostelium discoideum chromosome 2 map complement(3527391-3470188) strain AX4, complete sequence.    44   4e-16  13
dna update 2004. 2.23
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FM992695_755(FM992695|pid:none) Candida dubliniensis CD36 chromo...    39   0.28
AM920437_2004(AM920437|pid:none) Penicillium chrysogenum Wiscons...    37   1.8
FN392320_757(FN392320|pid:none) Pichia pastoris GS115 chromosome...    36   2.4
AK029763_1(AK029763|pid:none) Mus musculus adult male testis cDN...    35   4.1
BX883045_4(BX883045|pid:none) Rattus norvegicus chromosome 20, m...    35   4.1
AK169864_1(AK169864|pid:none) Mus musculus NOD-derived CD11c +ve...    35   4.1
(Q54E83) RecName: Full=Glutathione synthetase;          EC=6.3.2...    35   5.3
AF059675_1(AF059675|pid:none) Homo sapiens putative RNA helicase...    35   5.3
AF019413_6(AF019413|pid:none) Homo sapiens HLA class III region ...    35   5.3
AL645922_14(AL645922|pid:none) Human DNA sequence from clone XXb...    35   5.3
protein update 2009. 7. 3
PSORT 

 psg: 0.93  gvh: 0.33  alm: 0.40  top: 0.27  tms: 0.00  mit: 0.27  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 32.0 %: nuclear
	 12.0 %: vacuolar
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for SFJ207 is cyt
5' end seq. ID SFJ207F
5' end seq. 
>SFJ207F.Seq
ACTCTTCAATTTTAATTCATCAAGTTTTTTATTTATTTATTTAAAAATGATAGAATTAAA
CATTGATTCATTTTTAGAAGAATTAAATAATTTAGAAAATATAACATCAACAAACACTAC
ACCAGTAAATAAATCAAATAGTAGTATTAAAAATAATAGTAATAACACAAATGTAGAATC
CTTTGATTTACCAAATTGGTATGTAAATCCTACAGGTTTATCAGCTCAACCTGAAATTAC
ACCAATTGCTCCTCAATCATCAATAATTTCACCAACCATTCCAAATAATTGTATCCAATT
ATTTAATTTTTCAGATAAAGAAGAAATATTATCAGATATAAGAAGAGAATATTTAGATTT
TTCAATTGAAAGTCATAAATTGAATGATGATGATGAACAAAAGAGACAATCATATTTAAT
ATGGCCAAGAAATATTGATACTGATAGTTGGGATTTTAAATTACTTGCAGAGCGTACATT
ATCAATTCCATGTTCAACAGTTGAATTGGTTATTGATAAGATTCAATATTCAATTTCAAT
TACAAACTATCATGAAGTTTTCTTAAATACTGAAAAAACTTCTTCAAATTCAACTTCATT
AGATAGACC----------
Length of 5' end seq. 609
3' end seq. ID SFJ207Z
3' end seq. 
>SFJ207Z.Seq
----------CATTATCAATTCCATGTTCAACAGTTGAATTGGTTATTGATAAGATTCAA
TATTCAATTTCAATTACAAACTATCATGAAGTTTTCTTAAATACTGAAAAAACTTCTTCA
AATTCAACTTCATTAGATAGACCATGGAGTAATTCAATATCAAAAGATAATTTTCATCGT
GGTAATACTTCAAATTTACCATTTTTACCTGGCGGTATAAAATCACCTAATAACAATAGT
ANTAATAGTACTAATAATAATAATCANACACCAATTGATTGGGTACAATTTTGGCATTCA
AAATCATTATTAGTTNAACCACCTGGTTTAGATAATGGTATTTTAGATTTTAATGANAAT
ATTAATAANCAAGATAACAANCAACAACAACAACAACAACAACAACAACAACAACAACAA
CAACAACAACAACAACAACAAGAAAAGGAAAAAGAAGAAGAAGAAGAAGTTAATTTAAGA
TATACATTAAAAGATTTAGAAAGAGAAATTGAAGAAGAAAGAAAGAGAGAAGAAGCTGAG
GAAGCTGAAGTTTATGAAGATGATGATCAAGAAGATGATTTAGATATTGAAGAAGAGGAA
TTGGATGAATTGGATGATATTGAAAAAACAAAGGAAGAAATTGATGATATTATTAAATCA
CCGCCTCAACCAACCTCATCATCATTATCAACTTCATCATCATCATCGTCAACAACATTA
AAAGATAAAAATAAAAT
Length of 3' end seq. 727
Connected seq. ID SFJ207P
Connected seq. 
>SFJ207P.Seq
ACTCTTCAATTTTAATTCATCAAGTTTTTTATTTATTTATTTAAAAATGATAGAATTAAA
CATTGATTCATTTTTAGAAGAATTAAATAATTTAGAAAATATAACATCAACAAACACTAC
ACCAGTAAATAAATCAAATAGTAGTATTAAAAATAATAGTAATAACACAAATGTAGAATC
CTTTGATTTACCAAATTGGTATGTAAATCCTACAGGTTTATCAGCTCAACCTGAAATTAC
ACCAATTGCTCCTCAATCATCAATAATTTCACCAACCATTCCAAATAATTGTATCCAATT
ATTTAATTTTTCAGATAAAGAAGAAATATTATCAGATATAAGAAGAGAATATTTAGATTT
TTCAATTGAAAGTCATAAATTGAATGATGATGATGAACAAAAGAGACAATCATATTTAAT
ATGGCCAAGAAATATTGATACTGATAGTTGGGATTTTAAATTACTTGCAGAGCGTACATT
ATCAATTCCATGTTCAACAGTTGAATTGGTTATTGATAAGATTCAATATTCAATTTCAAT
TACAAACTATCATGAAGTTTTCTTAAATACTGAAAAAACTTCTTCAAATTCAACTTCATT
AGATAGACC----------CATTATCAATTCCATGTTCAACAGTTGAATTGGTTATTGAT
AAGATTCAATATTCAATTTCAATTACAAACTATCATGAAGTTTTCTTAAATACTGAAAAA
ACTTCTTCAAATTCAACTTCATTAGATAGACCATGGAGTAATTCAATATCAAAAGATAAT
TTTCATCGTGGTAATACTTCAAATTTACCATTTTTACCTGGCGGTATAAAATCACCTAAT
AACAATAGTANTAATAGTACTAATAATAATAATCANACACCAATTGATTGGGTACAATTT
TGGCATTCAAAATCATTATTAGTTNAACCACCTGGTTTAGATAATGGTATTTTAGATTTT
AATGANAATATTAATAANCAAGATAACAANCAACAACAACAACAACAACAACAACAACAA
CAACAACAACAACAACAACAACAACAACAAGAAAAGGAAAAAGAAGAAGAAGAAGAAGTT
AATTTAAGATATACATTAAAAGATTTAGAAAGAGAAATTGAAGAAGAAAGAAAGAGAGAA
GAAGCTGAGGAAGCTGAAGTTTATGAAGATGATGATCAAGAAGATGATTTAGATATTGAA
GAAGAGGAATTGGATGAATTGGATGATATTGAAAAAACAAAGGAAGAAATTGATGATATT
ATTAAATCACCGCCTCAACCAACCTCATCATCATTATCAACTTCATCATCATCATCGTCA
ACAACATTAAAAGATAAAAATAAAAT
Length of connected seq. 1336
Full length Seq ID SFJ207E
Full length Seq. 
>SFJ207E.Seq
ACTCTTCAATTTTAATTCATCAAGTTTTTTATTTATTTATTTAAAAATGATAGAATTAAA
CATTGATTCATTTTTAGAAGAATTAAATAATTTAGAAAATATAACATCAACAAACACTAC
ACCAGTAAATAAATCAAATAGTAGTATTAAAAATAATAGTAATAACACAAATGTAGAATC
CTTTGATTTACCAAATTGGTATGTAAATCCTACAGGTTTATCAGCTCAACCTGAAATTAC
ACCAATTGCTCCTCAATCATCAATAATTTCACCAACCATTCCAAATAATTGTATCCAATT
ATTTAATTTTTCAGATAAAGAAGAAATATTATCAGATATAAGAAGAGAATATTTAGATTT
TTCAATTGAAAGTCATAAATTGAATGATGATGATGAACAAAAGAGACAATCATATTTAAT
ATGGCCAAGAAATATTGATACTGATAGTTGGGATTTTAAATTACTTGCAGAGCGTACATT
ATCAATTCCATGTTCAACAGTTGAATTGGTTATTGATAAGATTCAATATTCAATTTCAAT
TACAAACTATCATGAAGTTTTCTTAAATACTGAAAAAACTTCTTCAAATTCAACTTCATT
AGATAGACCATGGAGTAATTCAATATCAAAAGATAATTTTCATCGTGGTAATACTTCAAA
TTTACCATTTTTACCTGGCGGTATAAAATCACCTAATAACAATAGTANTAATAGTACTAA
TAATAATAATCANACACCAATTGATTGGGTACAATTTTGGCATTCAAAATCATTATTAGT
TNAACCACCTGGTTTAGATAATGGTATTTTAGATTTTAATGANAATATTAATAANCAAGA
TAACAANCAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACA
ACAACAAGAAAAGGAAAAAGAAGAAGAAGAAGAAGTTAATTTAAGATATACATTAAAAGA
TTTAGAAAGAGAAATTGAAGAAGAAAGAAAGAGAGAAGAAGCTGAGGAAGCTGAAGTTTA
TGAAGATGATGATCAAGAAGATGATTTAGATATTGAAGAAGAGGAATTGGATGAATTGGA
TGATATTGAAAAAACAAAGGAAGAAATTGATGATATTATTAAATCACCGCCTCAACCAAC
CTCATCATCATTATCAACTTCATCATCATCATCGTCAACAACATTAAAAGATAAAAATAA
AAT
Length of full length seq. 1203