SFJ202
Library SF
(Link to library)
Clone ID SFJ202
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16560-1
Original site URL
Representative seq. ID SFJ202P
(Link to Original site)
Representative DNA sequence
>SFJ202 (SFJ202Q) /CSM/SF/SFJ2-A/SFJ202Q.Seq.d/
ATTTTTCAAATTCATTTTTATTATACAAATATTAAATTCATATTTTATTTTTTTATATAT
TGTAACATTTCATAAAAAAAAAAAAAAAAAAAAAAAATTTAAAAANTCNCCTTTTTNGAA
AAAAAAAAXXXXXXXXXXCCCTCCCCGGTAAGACTTTACACTGGAAGTGAGGGTAGTGCC
ACCATGGGAATGTAAACCAAAGATTCAAGATAAAGAAGGTTTCCNCCAGATCANCAACGT
CTCATTTCGCTGGTAACCAATTANAAGAAGGNTCGNACTCTCTCTGATTACAATATCCAA
AAAGAATCACCTCTCCCACTTGGTCCTCAGAATTAAGAGGTGGTATGCAAATCTTTGTCA
AAACCATTAACTGGTAAGACCATCACTCTTGAAGTTGAGGGCTCAGATAATATTGAAAAT
GTTAAAACAAAGATTCAAGACAAAGAAGGTATCCCACCAGACCAACAAAGATTAATTTTC
GCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGATTACAACATTCAAAAGGAATCC
ACTCTCCATTTAGTCCTCAGATTAAGAGGTGGTATGCAAATTTTTGTCAAAACCCTCACT
GGTAAGACTATTACACTCGAAGTTGAAGGTTCTGATAACATTGAGAATGTTAAAGCCAAA
ATCCAAGACAAAGAAGGTATTCCACCAGATCAACAACGTCTCATTTTCGCCGGTAAACAA
TTGGAGGATGGTCGTACTCTCTCTGATTACAACATTCAAAAGGAATCCACTCTCCATTTA
GTTCTCAGATTAAGAGGTGGTATGCAAATTTTTGTAAAAACTCTCACTGGTAAAACCATT
ACACTCGAAGTTGAAGGTAGTGACAACATTGAGAATGTAAAAACAAAAATTCAAGACAAA
GNAGGTGNCCC
sequence update 2001. 6. 1
Translated Amino Acid sequence
FFKFIFIIQILNSYFIFLYIVTFHKKKKKKKKFKXSPFXKKK---

---PSPVRLYTGSEGSATMGM*tkdsr*rrfppdxqrlislvtnxkkxrtlsdyniqkes
plplgpqn*evvckslskpltgktitlevegsdnienvktkiqdkegippdqqrlifagk
qledgrtlsdyniqkestlhlvlrlrggmqifvktltgktitlevegsdnienvkakiqd
kegippdqqrlifagkqledgrtlsdyniqkestlhlvlrlrggmqifvktltgktitle
vegsdnienvktkiqdkxgx


Translated Amino Acid sequence (All Frames)
Frame A:
ifqihfyytnikfifyffiycnis*kkkkkkki*kxxfxekk---

---PSPVRLYTGSEGSATMGM*tkdsr*rrfppdxqrlislvtnxkkxrtlsdyniqkes
plplgpqn*evvckslskpltgktitlevegsdnienvktkiqdkegippdqqrlifagk
qledgrtlsdyniqkestlhlvlrlrggmqifvktltgktitlevegsdnienvkakiqd
kegippdqqrlifagkqledgrtlsdyniqkestlhlvlrlrggmqifvktltgktitle
vegsdnienvktkiqdkxgx

Frame B:
FFKFIFIIQILNSYFIFLYIVTFHKKKKKKKKFKXSPFXKKK---

---ppr*dftlevrvvppweckpkiqdkegfxqixnvsfrw*pixrrxxlslitiskknh
lshlvlrikrwyanlcqnh*lvrpsllklraqiilkmlkqrfktkkvshqtnkd*fslvn
n*kmvvlslittfkrnplsi*ssd*evvckflskpslvrllhsklkvlitlrmlkpkskt
kkvfhqinnvsfspvnnwrmvvlslittfkrnplsi*fsd*evvckfl*klslvkplhsk
lkvvttlrm*kqkfktkxvx

Frame C:
fsnsfllyky*ihilffyil*hfikkkkkkknlkxxlfxkkk---

---lpgktlhwk*g*chhgnvnqrfkikkvsxrsxtshfagnqlxegsxsl*lqypkrit
sptwsselrggmqifvktinw*dhhs*s*glr*y*kc*nkdsrqrryptrptkinfrw*t
irrwsysl*lqhskgihspfspqikrwyanfcqnphw*dyytrs*rf**h*ec*sqnprq
rrystrsttshfrr*tiggwsysl*lqhskgihspfssqikrwyanfcknshw*nhytrs
*r**qh*ecknknsrqxrxp

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SFJ202 (SFJ202Q) /CSM/SF/SFJ2-A/SFJ202Q.Seq.d/ 1491 0.0
AFL649 (AFL649Q) /CSM/AF/AFL6-C/AFL649Q.Seq.d/ 1324 0.0
CFK113 (CFK113Q) /CSM/CF/CFK1-A/CFK113Q.Seq.d/ 1312 0.0
AFK323 (AFK323Q) /CSM/AF/AFK3-A/AFK323Q.Seq.d/ 1312 0.0
CFG688 (CFG688Q) /CSM/CF/CFG6-D/CFG688Q.Seq.d/ 1308 0.0
CFG543 (CFG543Q) /CSM/CF/CFG5-B/CFG543Q.Seq.d/ 1306 0.0
CFC580 (CFC580Q) /CSM/CF/CFC5-D/CFC580Q.Seq.d/ 1306 0.0
CFF113 (CFF113Q) /CSM/CF/CFF1-A/CFF113Q.Seq.d/ 1304 0.0
AFE114 (AFE114Q) /CSM/AF/AFE1-A/AFE114Q.Seq.d/ 1304 0.0
SFD545 (SFD545Q) /CSM/SF/SFD5-B/SFD545Q.Seq.d/ 1302 0.0

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

M19491|M19491.1 Slime mold (D.discoideum) ubiquitin p229C/pLK229 gene, complete cds. 1061 0.0 7
M23748|M23748.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB19. 1045 0.0 7
M19666|M19666.1 Slime mold (D.discoideum) ubiquitin gene, 3' end, clone p229C. 1045 0.0 7
M23753|M23753.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB14. 622 0.0 5
M23754|M23754.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB2. 640 e-180 6
M19492|M19492.1 Slime mold (D.discoideum) ubiquitin lambda-229 gene, complete cds. 624 e-175 5
M23752|M23752.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB17. 484 e-164 5
M23751|M23751.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB18. 484 e-164 5
BJ541175|BJ541175.1 Oryzias latipes cDNA clone:MF01SSB034A18, 3' end single read. 176 6e-85 6
Z54197|Z54197.1 C.albicans UBI4 gene encoding polyubiquitin. 170 2e-83 5
dna update 2004. 1. 5
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

A27806(A27806) polyubiquitin 5 (clone pLK229) - slime mold (Dict... 375 e-102
M19666_1(M19666|pid:none) Slime mold (D.discoideum) ubiquitin ge... 375 e-102
B34080(B34080)polyubiquitin 5 (clone DCUB19) - slime mold (Dicty... 375 e-102
M23754_1(M23754|pid:none) D.discoideum ubiquitin mRNA, complete ... 371 e-101
AY957885_1(AY957885|pid:none) Gracilaria lemaneiformis polyubiqu... 360 5e-98
BC127395_1(BC127395|pid:none) Danio rerio zgc:153686, mRNA (cDNA... 358 1e-97
AB021974_1(AB021974|pid:none) Bombyx mori UBI3 mRNA for polyubiq... 358 2e-97
S53719(S53719;S73107;S71069)polyubiquitin 6 - red alga (Gracilar... 357 2e-97
Y12081_1(Y12081|pid:none) Suberites domuncula mRNA for polyubiqu... 357 2e-97
S32020(S32020) polyubiquitin 6 - Geodia cydonium &X70917_1(X709... 357 2e-97
protein update 2009. 5.26
PSORT

psg: 0.96 gvh: 0.32 alm: 0.26 top: 1.03 tms: 0.07 mit: 0.38 mip: 0.00
nuc: 0.61 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 1.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

44.0 %: nuclear
28.0 %: cytoplasmic
8.0 %: mitochondrial
8.0 %: Golgi
4.0 %: plasma membrane
4.0 %: vesicles of secretory system
4.0 %: peroxisomal

>> prediction for SFJ202 is nuc

5' end seq. ID SFJ202F
5' end seq.
>SFJ202F.Seq
ATTTTTCAAATTCATTTTTATTATACAAATATTAAATTCATATTTTATTTTTTTATATAT
TGTAACATTTCATAAAAAAAAAAAAAAAAAAAAAAAATTTAAAAANTCNCCTTTTTNGAA
AAAAAAAA----------
Length of 5' end seq. 128
3' end seq. ID SFJ202Z
3' end seq.
>SFJ202Z.Seq
----------CCCTCCCCGGTAAGACTTTACACTGGAAGTGAGGGTAGTGCCACCATGGG
AATGTAAACCAAAGATTCAAGATAAAGAAGGTTTCCNCCAGATCANCAACGTCTCATTTC
GCTGGTAACCAATTANAAGAAGGNTCGNACTCTCTCTGATTACAATATCCAAAAAGAATC
ACCTCTCCCACTTGGTCCTCAGAATTAAGAGGTGGTATGCAAATCTTTGTCAAAACCATT
AACTGGTAAGACCATCACTCTTGAAGTTGAGGGCTCAGATAATATTGAAAATGTTAAAAC
AAAGATTCAAGACAAAGAAGGTATCCCACCAGACCAACAAAGATTAATTTTCGCTGGTAA
ACAATTAGAAGATGGTCGTACTCTCTCTGATTACAACATTCAAAAGGAATCCACTCTCCA
TTTAGTCCTCAGATTAAGAGGTGGTATGCAAATTTTTGTCAAAACCCTCACTGGTAAGAC
TATTACACTCGAAGTTGAAGGTTCTGATAACATTGAGAATGTTAAAGCCAAAATCCAAGA
CAAAGAAGGTATTCCACCAGATCAACAACGTCTCATTTTCGCCGGTAAACAATTGGAGGA
TGGTCGTACTCTCTCTGATTACAACATTCAAAAGGAATCCACTCTCCATTTAGTTCTCAG
ATTAAGAGGTGGTATGCAAATTTTTGTAAAAACTCTCACTGGTAAAACCATTACACTCGA
AGTTGAAGGTAGTGACAACATTGAGAATGTAAAAACAAAAATTCAAGACAAAGNAGGTGN
CCC
Length of 3' end seq. 773
Connected seq. ID SFJ202P
Connected seq.
>SFJ202P.Seq
ATTTTTCAAATTCATTTTTATTATACAAATATTAAATTCATATTTTATTTTTTTATATAT
TGTAACATTTCATAAAAAAAAAAAAAAAAAAAAAAAATTTAAAAANTCNCCTTTTTNGAA
AAAAAAAA----------CCCTCCCCGGTAAGACTTTACACTGGAAGTGAGGGTAGTGCC
ACCATGGGAATGTAAACCAAAGATTCAAGATAAAGAAGGTTTCCNCCAGATCANCAACGT
CTCATTTCGCTGGTAACCAATTANAAGAAGGNTCGNACTCTCTCTGATTACAATATCCAA
AAAGAATCACCTCTCCCACTTGGTCCTCAGAATTAAGAGGTGGTATGCAAATCTTTGTCA
AAACCATTAACTGGTAAGACCATCACTCTTGAAGTTGAGGGCTCAGATAATATTGAAAAT
GTTAAAACAAAGATTCAAGACAAAGAAGGTATCCCACCAGACCAACAAAGATTAATTTTC
GCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGATTACAACATTCAAAAGGAATCC
ACTCTCCATTTAGTCCTCAGATTAAGAGGTGGTATGCAAATTTTTGTCAAAACCCTCACT
GGTAAGACTATTACACTCGAAGTTGAAGGTTCTGATAACATTGAGAATGTTAAAGCCAAA
ATCCAAGACAAAGAAGGTATTCCACCAGATCAACAACGTCTCATTTTCGCCGGTAAACAA
TTGGAGGATGGTCGTACTCTCTCTGATTACAACATTCAAAAGGAATCCACTCTCCATTTA
GTTCTCAGATTAAGAGGTGGTATGCAAATTTTTGTAAAAACTCTCACTGGTAAAACCATT
ACACTCGAAGTTGAAGGTAGTGACAACATTGAGAATGTAAAAACAAAAATTCAAGACAAA
GNAGGTGNCCC
Length of connected seq. 901
Full length Seq ID -
Full length Seq. -
Length of full length seq. -