NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFJ168
Library SF
(Link to library)
Clone ID SFJ168
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16452-1
Original site URL
Representative seq. ID SFJ168P
(Link to Original site)
Representative DNA sequence 
>SFJ168 (SFJ168Q) /CSM/SF/SFJ1-C/SFJ168Q.Seq.d/
ATATTTACACATAACACTCCATTAGTTTTTTTGTATATAATTTTATATTTAAAAATGAAA
GTTGTTTTATTTGTTTTAATGGCAATCATTGCCGTTTCATTTGCTGCCACTAATTTTGTT
GATCATAGAAGTGGTCACATTGTTATCAAACCAACTGAATCACAAAATTCAAAATTATTC
TTAAAAGGTTCAGCTTTTGATAAAGTTTCACTTAAAAATATTAATGATGTTCAAGTTTCA
AACATCATCACTCACGTTATGGGTCTCTTACCATTAAACAATGAAGAAGTTTCAGGTCTC
CCAGCTGCTTCAATCTTTAACAAACCAAAATTAAATTTATTCTTTTCAGTTGAATCAGTT
TCAAGTGATGATTTAGTAAACTCTAAAATTTTCAATTCAGAATCAATGATTTCAATTGAA
AAAACTTTTACTCCACAAGATTTAATTTCTGAATTAACCACTATTGTTACTGGTGTTACA
CCAAATGTTCATGGTATTGTTTCATCCAATTGGATCAATCCAACAACTGGTCATAAGGTT
CATGCCTACGAAAAATCAACTCAATCATCAGCTGCCAACATTGCTTACTTXXXXXXXXXX
CGTGAATCACAAGGTGCCAACTCTGATGCCTTCAAATTTGCTTTGGCTTTAGTTGAACAA
ACCATTCAATCAACCATCACTCAATTATCAGGTGTCTATGGTGACCGTGTTGCTTGTGAA
ATCGTTGCTCTCGCTCCAAAACATGCTTTCACTGAAGAACAAATCGAAAAACTCGAATCC
ATCGTTGGTGAACATACTCATGATATCACTGAAACCCTCCCACACATTTACGTTTTACCA
GAAAGCAGTGAAAAAGTTGATGACATTTGCCAACAAATTCAATCATCTATCCCATCTGAA
CTCTCTGCCCAATGTTTCATTCATACTCTTCCAGTTTCATTCCTTCAAGATGCTTCAGGT
TCAGCACCAGCTCCAACACAAACACCAGTCCCATCAGACAGTGATTCATCTGCTTCAGGT
GAAAATCCAATCATTGCAACTCAAAATACCAACAGAATTGCTGCTTTCCAAATTTTCCTC
TTCTTCCCAATCGTTTTTGCATTATTCATTGGTGGTGGTATTTTATACATTATGAAAATC
AGTTTCACTGCTCAATCTGATACTTTATTANATCGTTCATCTCAACGTCAATATTAAATT
TCTTAAATAAAATAAAATTAAATTAAAATANA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
IFTHNTPLVFLYIILYLKMKVVLFVLMAIIAVSFAATNFVDHRSGHIVIKPTESQNSKLF
LKGSAFDKVSLKNINDVQVSNIITHVMGLLPLNNEEVSGLPAASIFNKPKLNLFFSVESV
SSDDLVNSKIFNSESMISIEKTFTPQDLISELTTIVTGVTPNVHGIVSSNWINPTTGHKV
HAYEKSTQSSAANIAY---

---RESQGANSDAFKFALALVEQTIQSTITQLSGVYGDRVACEIVALAPKHAFTEEQIEK
LESIVGEHTHDITETLPHIYVLPESSEKVDDICQQIQSSIPSELSAQCFIHTLPVSFLQD
ASGSAPAPTQTPVPSDSDSSASGENPIIATQNTNRIAAFQIFLFFPIVFALFIGGGILYI
MKISFTAQSDTLLXRSSQRQY*is*ik*n*iki
Translated Amino Acid sequence (All Frames) 
Frame A:
IFTHNTPLVFLYIILYLKMKVVLFVLMAIIAVSFAATNFVDHRSGHIVIKPTESQNSKLF
LKGSAFDKVSLKNINDVQVSNIITHVMGLLPLNNEEVSGLPAASIFNKPKLNLFFSVESV
SSDDLVNSKIFNSESMISIEKTFTPQDLISELTTIVTGVTPNVHGIVSSNWINPTTGHKV
HAYEKSTQSSAANIAY---

---RESQGANSDAFKFALALVEQTIQSTITQLSGVYGDRVACEIVALAPKHAFTEEQIEK
LESIVGEHTHDITETLPHIYVLPESSEKVDDICQQIQSSIPSELSAQCFIHTLPVSFLQD
ASGSAPAPTQTPVPSDSDSSASGENPIIATQNTNRIAAFQIFLFFPIVFALFIGGGILYI
MKISFTAQSDTLLXRSSQRQY*is*ik*n*iki

Frame B:
ylhitlh*ffci*fyi*k*klfylf*wqslpfhllplilliievvtllsnqlnhkiqnys
*kvqllikfhlkilmmfkfqtssltlwvsyh*tmkkfqvsqllqsltnqn*iysfqlnqf
qvmi**tlkfsiqnq*fqlkklllhki*fln*pllllvlhqmfmvlfhpigsiqqlvirf
mptknqlnhqlptllt---

---vnhkvptlmpsnllwl*lnkpfnqpslnyqvsmvtvllvksllslqnmlslknkskn
snpslvnilmislkpshtftfyqkavkklmtfankfnhlshlnslpnvsfilfqfhsfkm
lqvqhqlqhkhqshqtvihllqvkiqslqlkiptelllskfssssqsflhyslvvvfytl
*ksvsllnlilyxivhlnvnikflk*nkiklkx

Frame C:
iyt*hsisffvynfifknescficfngnhcrficch*fc*s*kwshcyqtn*itkfkiil
krfsf**sft*ky**cssfkhhhsrygsltikq*rsfrspscfnl*qtkikfilfs*isf
k**fskl*nfqfrindfn*knfystrfnf*inhycywcytkcswycfiqldqsnnws*gs
clrkinsiiscqhcll---

---*itrcql*clqicfgfs*tnhsinhhsiirclw*pccl*nrcsrsktcfh*rtnrkt
rihrw*tys*yh*nppthlrftrkq*ks**hlptnsiiypi*tlcpmfhsysssfipsrc
frfstssntntspirq*ficfr*ksnhcnskyqqnccfpnfpllpnrfciihwwwyfihy
enqfhcsi*yfixsfistsilnflnkikln*nx
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFJ168 (SFJ168Q) /CSM/SF/SFJ1-C/SFJ168Q.Seq.d/                       2248   0.0
SFJ395 (SFJ395Q) /CSM/SF/SFJ3-D/SFJ395Q.Seq.d/                       1160   0.0
SFI762 (SFI762Q) /CSM/SF/SFI7-C/SFI762Q.Seq.d/                       1160   0.0
SFI650 (SFI650Q) /CSM/SF/SFI6-C/SFI650Q.Seq.d/                       1160   0.0
SFI472 (SFI472Q) /CSM/SF/SFI4-C/SFI472Q.Seq.d/                       1160   0.0
SFI456 (SFI456Q) /CSM/SF/SFI4-C/SFI456Q.Seq.d/                       1160   0.0
SFI311 (SFI311Q) /CSM/SF/SFI3-A/SFI311Q.Seq.d/                       1160   0.0
SFH177 (SFH177Q) /CSM/SF/SFH1-D/SFH177Q.Seq.d/                       1160   0.0
SFG623 (SFG623Q) /CSM/SF/SFG6-A/SFG623Q.Seq.d/                       1160   0.0
SFE586 (SFE586Q) /CSM/SF/SFE5-D/SFE586Q.Seq.d/                       1160   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AX458482|AX458482.1 Sequence 28 from Patent WO0246454.             46   7e-05  8
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence.    34   4e-04  16
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    32   4e-04  19
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.           42   7e-04  21
AC116988|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    32   9e-04  19
AJ010592|AJ010592.2 Guillardia theta DNA for complete sequence of nucleomorph chromosome 2.    32   0.001  14
AC116330|AC116330.2 Dictyostelium discoideum chromosome 2 map 3191214-3323468 strain AX4, complete sequence.    32   0.001  12
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    32   0.001  17
BZ361655|BZ361655.1 ie23f07.b1 WGS-ZmaysF (JM107 adapted methyl filtered) Zea mays genomic clone ie23f07 5', DNA sequence.    40   0.004  2
CC788936|CC788936.1 ZMMBBb0157P07.r ZMMBBb Zea mays subsp. mays genomic clone ZMMBBb0157P07 3', genomic survey sequence.    40   0.004  2
dna update 2004. 1. 5
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE015928_4361(AE015928|pid:none) Bacteroides thetaiotaomicron VP...    39   0.28
AP006841_1070(AP006841|pid:none) Bacteroides fragilis YCH46 DNA,...    38   0.62
(A6WSW9) RecName: Full=Thiopurine S-methyltransferase;          ...    38   0.62
CP000282_106(CP000282|pid:none) Saccharophagus degradans 2-40, c...    38   0.81
CT573213_1905(CT573213|pid:none) Frankia alni str. ACN14A chromo...    37   1.1
CP000473_4322(CP000473|pid:none) Solibacter usitatus Ellin6076, ...    37   1.1
CP000454_2733(CP000454|pid:none) Arthrobacter sp. FB24, complete...    37   1.1
CP000817_3338(CP000817|pid:none) Lysinibacillus sphaericus C3-41...    37   1.4
CP000319_931(CP000319|pid:none) Nitrobacter hamburgensis X14, co...    36   2.4
CP000480_2681(CP000480|pid:none) Mycobacterium smegmatis str. MC...    36   2.4
protein update 2009. 5.26
PSORT 

 psg: 0.96  gvh: 0.71  alm: 0.21  top: 0.57  tms: 0.07  mit: 0.31  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.42  leu: 0.21  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 1.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 36.0 %: plasma membrane
	 32.0 %: extracellular, including cell wall
	 20.0 %: endoplasmic reticulum
	 12.0 %: Golgi

>> prediction for SFJ168 is pla
5' end seq. ID SFJ168F
5' end seq. 
>SFJ168F.Seq
ATATTTACACATAACACTCCATTAGTTTTTTTGTATATAATTTTATATTTAAAAATGAAA
GTTGTTTTATTTGTTTTAATGGCAATCATTGCCGTTTCATTTGCTGCCACTAATTTTGTT
GATCATAGAAGTGGTCACATTGTTATCAAACCAACTGAATCACAAAATTCAAAATTATTC
TTAAAAGGTTCAGCTTTTGATAAAGTTTCACTTAAAAATATTAATGATGTTCAAGTTTCA
AACATCATCACTCACGTTATGGGTCTCTTACCATTAAACAATGAAGAAGTTTCAGGTCTC
CCAGCTGCTTCAATCTTTAACAAACCAAAATTAAATTTATTCTTTTCAGTTGAATCAGTT
TCAAGTGATGATTTAGTAAACTCTAAAATTTTCAATTCAGAATCAATGATTTCAATTGAA
AAAACTTTTACTCCACAAGATTTAATTTCTGAATTAACCACTATTGTTACTGGTGTTACA
CCAAATGTTCATGGTATTGTTTCATCCAATTGGATCAATCCAACAACTGGTCATAAGGTT
CATGCCTACGAAAAATCAACTCAATCATCAGCTGCCAACATTGCTTACTT----------
Length of 5' end seq. 590
3' end seq. ID SFJ168Z
3' end seq. 
>SFJ168Z.Seq
----------CGTGAATCACAAGGTGCCAACTCTGATGCCTTCAAATTTGCTTTGGCTTT
AGTTGAACAAACCATTCAATCAACCATCACTCAATTATCAGGTGTCTATGGTGACCGTGT
TGCTTGTGAAATCGTTGCTCTCGCTCCAAAACATGCTTTCACTGAAGAACAAATCGAAAA
ACTCGAATCCATCGTTGGTGAACATACTCATGATATCACTGAAACCCTCCCACACATTTA
CGTTTTACCAGAAAGCAGTGAAAAAGTTGATGACATTTGCCAACAAATTCAATCATCTAT
CCCATCTGAACTCTCTGCCCAATGTTTCATTCATACTCTTCCAGTTTCATTCCTTCAAGA
TGCTTCAGGTTCAGCACCAGCTCCAACACAAACACCAGTCCCATCAGACAGTGATTCATC
TGCTTCAGGTGAAAATCCAATCATTGCAACTCAAAATACCAACAGAATTGCTGCTTTCCA
AATTTTCCTCTTCTTCCCAATCGTTTTTGCATTATTCATTGGTGGTGGTATTTTATACAT
TATGAAAATCAGTTTCACTGCTCAATCTGATACTTTATTANATCGTTCATCTCAACGTCA
ATATTAAATTTCTTAAATAAAATAAAATTAAATTAAAATANA
Length of 3' end seq. 632
Connected seq. ID SFJ168P
Connected seq. 
>SFJ168P.Seq
ATATTTACACATAACACTCCATTAGTTTTTTTGTATATAATTTTATATTTAAAAATGAAA
GTTGTTTTATTTGTTTTAATGGCAATCATTGCCGTTTCATTTGCTGCCACTAATTTTGTT
GATCATAGAAGTGGTCACATTGTTATCAAACCAACTGAATCACAAAATTCAAAATTATTC
TTAAAAGGTTCAGCTTTTGATAAAGTTTCACTTAAAAATATTAATGATGTTCAAGTTTCA
AACATCATCACTCACGTTATGGGTCTCTTACCATTAAACAATGAAGAAGTTTCAGGTCTC
CCAGCTGCTTCAATCTTTAACAAACCAAAATTAAATTTATTCTTTTCAGTTGAATCAGTT
TCAAGTGATGATTTAGTAAACTCTAAAATTTTCAATTCAGAATCAATGATTTCAATTGAA
AAAACTTTTACTCCACAAGATTTAATTTCTGAATTAACCACTATTGTTACTGGTGTTACA
CCAAATGTTCATGGTATTGTTTCATCCAATTGGATCAATCCAACAACTGGTCATAAGGTT
CATGCCTACGAAAAATCAACTCAATCATCAGCTGCCAACATTGCTTACTT----------
CGTGAATCACAAGGTGCCAACTCTGATGCCTTCAAATTTGCTTTGGCTTTAGTTGAACAA
ACCATTCAATCAACCATCACTCAATTATCAGGTGTCTATGGTGACCGTGTTGCTTGTGAA
ATCGTTGCTCTCGCTCCAAAACATGCTTTCACTGAAGAACAAATCGAAAAACTCGAATCC
ATCGTTGGTGAACATACTCATGATATCACTGAAACCCTCCCACACATTTACGTTTTACCA
GAAAGCAGTGAAAAAGTTGATGACATTTGCCAACAAATTCAATCATCTATCCCATCTGAA
CTCTCTGCCCAATGTTTCATTCATACTCTTCCAGTTTCATTCCTTCAAGATGCTTCAGGT
TCAGCACCAGCTCCAACACAAACACCAGTCCCATCAGACAGTGATTCATCTGCTTCAGGT
GAAAATCCAATCATTGCAACTCAAAATACCAACAGAATTGCTGCTTTCCAAATTTTCCTC
TTCTTCCCAATCGTTTTTGCATTATTCATTGGTGGTGGTATTTTATACATTATGAAAATC
AGTTTCACTGCTCAATCTGATACTTTATTANATCGTTCATCTCAACGTCAATATTAAATT
TCTTAAATAAAATAAAATTAAATTAAAATANA
Length of connected seq. 1222
Full length Seq ID -
Full length Seq. -
Length of full length seq. -