>SFJ156 (SFJ156Q) /CSM/SF/SFJ1-C/SFJ156Q.Seq.d/
XXXXXXXXXXATACTCTATGAATGGTGAATTCTCAATGTGTAGCCAAGTTTGCAAAGTCA
GCAAAGTAGTTCAAAAGAATCCATCATTCGAATGTGTTAAGAAGATCGTTTTGTGGGAAG
ATATCGTTCAAACCGGTATCCTCTTTGCAATTATAAACCTCGTCTTTATTCTCATCTCTT
TCTGTAACTATAGCTTAATTTCACTCTTTGGTTATACAGCTTTCACTGTAACTATCACCT
CTATACTTTTCCATTTAATCTCTTTAATTTTACCAAAATATGTTCAAGGTGTATCTTTAA
ATAATCAATTCACTGATCAATTAAAAACTCTCAGTTTCCATATTCATGATGCTGTCATTG
AAAAACAAGTTAATAATGTTGCTGAATTAATCAACACTGTTTTAAGTATTGCAAAGGACG
TATTTGGTTGCAAGAGTGTTTATCTCTCTGCTCAATTTGCCATCGTTTTTTATTTAATCG
GTTGTTTAAGCAAATGTTTATCAAATACTGCCATCCTCTACTTTGGTTTCCTCGTTTCCT
TTGTTGTTCCAAGACTCTACGTTGAAAAGAAAGAAGTTATTGACCAACAATTCTCTAAAG
TATGTGCTCTTGCCAAAGAA

---YSMNGEFSMCSQVCKVSKVVQKNPSFECVKKIVLWEDIVQTGILFAIINLVFILISF
CNYSLISLFGYTAFTVTITSILFHLISLILPKYVQGVSLNNQFTDQLKTLSFHIHDAVIE
KQVNNVAELINTVLSIAKDVFGCKSVYLSAQFAIVFYLIGCLSKCLSNTAILYFGFLVSF
VVPRLYVEKKEVIDQQFSKVCALAKE

Frame A:
---YSMNGEFSMCSQVCKVSKVVQKNPSFECVKKIVLWEDIVQTGILFAIINLVFILISF
CNYSLISLFGYTAFTVTITSILFHLISLILPKYVQGVSLNNQFTDQLKTLSFHIHDAVIE
KQVNNVAELINTVLSIAKDVFGCKSVYLSAQFAIVFYLIGCLSKCLSNTAILYFGFLVSF
VVPRLYVEKKEVIDQQFSKVCALAKE


Frame B:
---tl*mvnsqcvakfaksak*fkrihhsnvlrrsfcgkisfkpvsslql*tsslfssls
vtia*fhslviqlsl*lsplyfsi*sl*fyqnmfkvyl*iinslin*klsvsifmmlslk
nklimlln*stlf*vlqrtylvarvfisllnlpsffi*svv*anvyqilpsstlvssfpl
lfqdstlkrkklltnnslkyvllpk


Frame C:
---lyew*ilnv*pslqsqqssskesiirmc*edrfvgryrsnryplcnykprlyshlfl
*l*lnftlwlysfhcnyhlytfpfnlfnftkicsrcifk*sih*siknsqfpys*cch*k
ts**cc*inqhcfkyckgriwlqeclslcsichrflfnrlfkqmfikychpllwfprflc
csktlr*kersy*ptil*smcscqr

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFJ156 (SFJ156Q) /CSM/SF/SFJ1-C/SFJ156Q.Seq.d/                       1209   0.0
VHN302 (VHN302Q) /CSM/VH/VHN3-A/VHN302Q.Seq.d/                       1201   0.0
VFN288 (VFN288Q) /CSM/VF/VFN2-D/VFN288Q.Seq.d/                       1201   0.0
VFL582 (VFL582Q) /CSM/VF/VFL5-D/VFL582Q.Seq.d/                       1201   0.0
VFJ186 (VFJ186Q) /CSM/VF/VFJ1-D/VFJ186Q.Seq.d/                       1201   0.0
VFI243 (VFI243Q) /CSM/VF/VFI2-B/VFI243Q.Seq.d/                       1201   0.0
VFG843 (VFG843Q) /CSM/VF/VFG8-B/VFG843Q.Seq.d/                       1201   0.0
VFG780 (VFG780Q) /CSM/VF/VFG7-D/VFG780Q.Seq.d/                       1201   0.0
VFG416 (VFG416Q) /CSM/VF/VFG4-A/VFG416Q.Seq.d/                       1201   0.0
VFC885 (VFC885Q) /CSM/VF/VFC8-D/VFC885Q.Seq.d/                       1201   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AL133376|AL133376.6 Human DNA sequence from clone RP1-76K20 on chromosome 11p13-14.3. Contains GSSs.    32   0.13   8
BX284688|BX284688.7 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    40   0.15   4
BX005265|BX005265.6 Zebrafish DNA sequence from clone CH211-254O16 in linkage group 5.    36   0.19   4
AC104861|AC104861.1 Mus musculus clone RP23-56I22, LOW-PASS SEQUENCE SAMPLING.    38   0.32   3
AC117567|AC117567.6 Mus musculus chromosome 16 clone RP24-380O24 map 16, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    46   0.57   1
AZ584787|AZ584787.1 1M0389K10R Mouse 10kb plasmid UUGC1M library Mus musculus genomic clone UUGC1M0389K10 R, DNA sequence.    46   0.57   1
AF083085|AF083085.1 Carassius auratus putative odorant receptor (GFB9) mRNA, partial cds.    46   0.57   1
AZ507725|AZ507725.1 1M0349D02R Mouse 10kb plasmid UUGC1M library Mus musculus genomic clone UUGC1M0349D02 R, DNA sequence.    46   0.57   1
AL844599|AL844599.3 Mouse DNA sequence from clone RP24-129L11 on chromosome 4.    32   0.63   7
AC022541|AC022541.11 Homo sapiens chromosome 10 clone RP11-4O7, complete sequence.    32   0.70   7

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK297492_1(AK297492|pid:none) Homo sapiens cDNA FLJ55108 complet...    60   5e-08
L10334_1(L10334|pid:none) Homo sapiens neuroendocrine-specific p...    59   8e-08
(Q5IS59) RecName: Full=Reticulon-1;  &AY665269_1(AY665269|pid:no...    59   8e-08
(Q16799) RecName: Full=Reticulon-1; AltName: Full=Neuroendocrine...    59   8e-08
CR457030_1(CR457030|pid:none) Homo sapiens full open reading fra...    59   8e-08
AB074899_1(AB074899|pid:none) Mus musculus Rtn-1A mRNA for retic...    59   1e-07
U17603_1(U17603|pid:none) Rattus norvegicus rS-Rex-s mRNA, compl...    59   1e-07
(Q8K0T0) RecName: Full=Reticulon-1; AltName: Full=Neuroendocrine...    59   1e-07
A60021(A60021) tropomyosin-related protein, neuronal - rat  &X52...    59   1e-07
BC116162_1(BC116162|pid:none) Bos taurus reticulon 1, mRNA (cDNA...    59   1e-07

 psg: 0.75  gvh: 0.52  alm: 0.18  top: 0.70  tms: 0.27  mit: 0.22  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 1.00  m_ : 0.00 

	 32.0 %: endoplasmic reticulum
	 20.0 %: plasma membrane
	 16.0 %: vacuolar
	 12.0 %: nuclear
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: cytoplasmic

>> prediction for SFJ156 is end

>SFJ156Z.Seq
----------ATACTCTATGAATGGTGAATTCTCAATGTGTAGCCAAGTTTGCAAAGTCA
GCAAAGTAGTTCAAAAGAATCCATCATTCGAATGTGTTAAGAAGATCGTTTTGTGGGAAG
ATATCGTTCAAACCGGTATCCTCTTTGCAATTATAAACCTCGTCTTTATTCTCATCTCTT
TCTGTAACTATAGCTTAATTTCACTCTTTGGTTATACAGCTTTCACTGTAACTATCACCT
CTATACTTTTCCATTTAATCTCTTTAATTTTACCAAAATATGTTCAAGGTGTATCTTTAA
ATAATCAATTCACTGATCAATTAAAAACTCTCAGTTTCCATATTCATGATGCTGTCATTG
AAAAACAAGTTAATAATGTTGCTGAATTAATCAACACTGTTTTAAGTATTGCAAAGGACG
TATTTGGTTGCAAGAGTGTTTATCTCTCTGCTCAATTTGCCATCGTTTTTTATTTAATCG
GTTGTTTAAGCAAATGTTTATCAAATACTGCCATCCTCTACTTTGGTTTCCTCGTTTCCT
TTGTTGTTCCAAGACTCTACGTTGAAAAGAAAGAAGTTATTGACCAACAATTCTCTAAAG
TATGTGCTCTTGCCAAAGAA