SFJ148
Library SF
(Link to library)
Clone ID SFJ148
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13855-1
Original site URL
Representative seq. ID SFJ148P
(Link to Original site)
Representative DNA sequence
>SFJ148 (SFJ148Q) /CSM/SF/SFJ1-B/SFJ148Q.Seq.d/
AAAATTTTTTTATTTTGCATGATAAAGCTGTTCATTATTTTTTCATTTTTTTTTTTATTT
TTTAGNGTCATAATTCATCAAGCAAAACAACCACAACANGAACAACAACAACAAATGTCA
ATTTTAAAAAGTTTTATTGAAGTTAGNGAAGATTCACACTTTCCAATTCAAAATCTTCCA
TATGGNGTCTTTAAACCAACCCTAAATGATCAAGCTAGAATTGGNGTTGCTATTGGNGAT
TTCGTTTGNGATTTATCAGTTTTAGCAGATTTAAAACTTTTTGATGGTAAATTAAAAGAT
ACTAAAGTTTTTCATCAAGAAAATTTAAATTCATTTATGTCATTAGGTAAAGAATTATGG
AGNGAAGCTAGAAAAACCATTCAAAATTTATTATCATCAGAAACATCAACTNTTAGAGAT
AATAAAGAGTNTAGAGAAAAGATATTTCATTCAATTTCAAGNGTAACAATGTTATTACCA
GCAAGAATTGGAGATTATACTGATTTCTATGCATCAAAAGAACATGCAACCAATGTTGGT
ATTATGTTTAGAGXXXXXXXXXXGAGTCTGCAAAAGATCATATCTTTGGTTTGGTACTTT
TGAATGATTGGAGTGCAAGAGATATCCAAAAATGGGAATACGTTCCATTGGGTCCATTCT
TGGCAAAGAATTTCGGCTCAACTATATCACCATGGGTTGTTACAATGGAGGCATTGCAAC
CATTTGCTACAAAACCACCAACTCAAGATCCACAACCAATGAAATATCTTCAAGAACAAG
GTAATACTACCTTTGATATTGAATTATCAGTTAGTATTAAATCTCCAAAAATGTCAAAAC
CTCATAAGGTTTCAACTTCAAATTTGAAATACATGTATTGGACACTCACTCAACAATTGG
CTCATCATACTGTAAATGGTTGTAATATGAATGCTGGTGATTTACTTGGTACTGGTACAA
TTAGTGGTCCAACTGAAGATAGCTATGGTTCAATGTTGGAACTCTCTTGGAAAGGTAGTA
AAGTGGTCTCATTAGGTACTGAAACAAATGAAGAAAGAAAATTCATTCAAGATGGTGATT
CTGTTATCTTATCTGGTCTTTGTAAAGGTAATGGTTATCAAATTGGTTTTGGTAATTGTG
AAGGTACAATTTTACCAGCTGATAAACGTCAATAAAAAAAATTAATTAAATAAATAAATA
AATAAAGAAAACTATTTTTAAAT
sequence update 2001. 6. 1
Translated Amino Acid sequence
KIFLFCMIKLFIIFSFFFLFFXVIIHQAKQPQXEQQQQMSILKSFIEVXEDSHFPIQNLP
YGVFKPTLNDQARIGVAIGDFVXDLSVLADLKLFDGKLKDTKVFHQENLNSFMSLGKELW
XEARKTIQNLLSSETSTXRDNKEXREKIFHSISXVTMLLPARIGDYTDFYASKEHATNVG
IMFR---

---ESAKDHIFGLVLLNDWSARDIQKWEYVPLGPFLAKNFGSTISPWVVTMEALQPFATK
PPTQDPQPMKYLQEQGNTTFDIELSVSIKSPKMSKPHKVSTSNLKYMYWTLTQQLAHHTV
NGCNMNAGDLLGTGTISGPTEDSYGSMLELSWKGSKVVSLGTETNEERKFIQDGDSVILS
GLCKGNGYQIGFGNCEGTILPADKRQ*kklik*ink*rklfln


Translated Amino Acid sequence (All Frames)
Frame A:
KIFLFCMIKLFIIFSFFFLFFXVIIHQAKQPQXEQQQQMSILKSFIEVXEDSHFPIQNLP
YGVFKPTLNDQARIGVAIGDFVXDLSVLADLKLFDGKLKDTKVFHQENLNSFMSLGKELW
XEARKTIQNLLSSETSTXRDNKEXREKIFHSISXVTMLLPARIGDYTDFYASKEHATNVG
IMFR---

---ESAKDHIFGLVLLNDWSARDIQKWEYVPLGPFLAKNFGSTISPWVVTMEALQPFATK
PPTQDPQPMKYLQEQGNTTFDIELSVSIKSPKMSKPHKVSTSNLKYMYWTLTQQLAHHTV
NGCNMNAGDLLGTGTISGPTEDSYGSMLELSWKGSKVVSLGTETNEERKFIQDGDSVILS
GLCKGNGYQIGFGNCEGTILPADKRQ*kklik*ink*rklfln

Frame B:
kffyfa**scslffhfffyflxs*fikqnnhnxnnnnkcqf*kvllklxkihtfqfkifh
mxslnqp*miklelxlllxisfxiyqf*qi*nflmvn*kilkffikki*ihlch*vknyg
xklekpfkiyyhqkhqlleiiksxekryfiqfqx*qcyyqqeleiilismhqknmqpmlv
lcle---

---slqkiislvwyf*migvqeiskngntfhwvhswqrisaqlyhhgllqwrhcnhllqn
hqlkihnq*nifknkvilplilnyqlvlnlqkcqnlirfqlqi*ntcighslnnwliil*
mvvi*mlviylvlvqlvvqlkiamvqcwnslgkvvkwsh*vlkqmkkensfkmvillsyl
vfvkvmviklvlvivkvqfyqlinvnkkn*lnk*inkenyf*

Frame C:
nffilhdkavhyffifffif*xhnssskttttxttttnvnfkkfy*s*xrftlsnskssi
wxl*tnpk*ss*nwxcywxfrlxfisfsrfktf*w*ikry*sfssrkfkfiyvir*rime
xs*knhskfiiirninx*r**rv*rkdisfnfkxnnvitsknwrly*flcikrtcnqcwy
yv*---

---vckrsylwfgtfe*leckrypkmgirsigsilgkefrlnyitmgcynggiaticykt
tnsrsttneissrtr*yyl*y*iis*y*isknvkts*gfnfkfeihvldthstigssyck
wl*yecw*ftwywyn*wsn*r*lwfnvgtller**sgliry*nk*rkkihsrw*fcyliw
sl*r*wlsnwfw*l*rynfts**tsikkin*ink*ikktifk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SFJ148 (SFJ148Q) /CSM/SF/SFJ1-B/SFJ148Q.Seq.d/ 1980 0.0
VFL795 (VFL795Q) /CSM/VF/VFL7-D/VFL795Q.Seq.d/ 1203 0.0
SFF638 (SFF638Q) /CSM/SF/SFF6-B/SFF638Q.Seq.d/ 1203 0.0
SFD819 (SFD819Q) /CSM/SF/SFD8-A/SFD819Q.Seq.d/ 1203 0.0
SFD588 (SFD588Q) /CSM/SF/SFD5-D/SFD588Q.Seq.d/ 1203 0.0
CHD537 (CHD537Q) /CSM/CH/CHD5-B/CHD537Q.Seq.d/ 1203 0.0
CHD530 (CHD530Q) /CSM/CH/CHD5-B/CHD530Q.Seq.d/ 1203 0.0
CHC122 (CHC122Q) /CSM/CH/CHC1-A/CHC122Q.Seq.d/ 1203 0.0
CFJ568 (CFJ568Q) /CSM/CF/CFJ5-C/CFJ568Q.Seq.d/ 1203 0.0
CFF515 (CFF515Q) /CSM/CF/CFF5-A/CFF515Q.Seq.d/ 1203 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

BM774584|BM774584.1 ra95c11.y1 Meloidogyne incognita egg pAMP1 Bird MeloidogyneFUMARYLACETOACETASE. [1] ;, mRNA sequence. 64 2e-12 2
BI504681|BI504681.1 BB170011A20F01 Bee Brain Normalized/Subtracted Library, BB17 Apis mellifera cDNA clone BB170011A20F01 5', mRNA sequence. 64 1e-07 2
AV384197|AV384197.1 Halocynthia roretzi cDNA clone:008K24_5, 5' end, expressed in fertilized egg. 42 5e-06 3
CF446374|CF446374.1 EST682719 normalized cDNA library of onion Allium cepa cDNA clone ACAHY76, mRNA sequence. 64 5e-06 1
CF440839|CF440839.1 EST677184 normalized cDNA library of onion Allium cepa cDNA clone ACAFM72, mRNA sequence. 64 5e-06 1
BW129032|BW129032.1 Ciona intestinalis cDNA, clone:rcign001a22, 3' end, single read. 50 2e-05 3
CB377955|CB377955.1 rq05b07.y1 Heterodera glycines J3 Heterodera glycines cDNA 5' similar to TR:Q94272 Q94272 SIMILAR TO FUMARYLACETOACETASE. [1] ;, mRNA sequence. 62 2e-05 1
BW075982|BW075982.1 Ciona intestinalis cDNA, clone:rcieg067n18, 3' end, single read. 48 5e-05 3
AV888124|AV888124.1 Ciona intestinalis cDNA, clone:rcicl27h05, 3' end, single read. 48 5e-05 3
BP018255|BP018255.1 Ciona intestinalis cDNA, clone:ciad79b21, 5' end, single read. 48 6e-05 3
dna update 2004. 1. 5
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q1ZXQ1) RecName: Full=Fumarylacetoacetase; Short=FAA; ... 422 e-117
BT078080_1(BT078080|pid:none) Lepeophtheirus salmonis clone lsal... 274 4e-72
AY891819_1(AY891819|pid:none) Synthetic construct Homo sapiens c... 269 2e-70
(P16930) RecName: Full=Fumarylacetoacetase; Short=FAA; ... 269 2e-70
(A5PKH3) RecName: Full=Fumarylacetoacetase; Short=FAA; ... 268 3e-70
BC157696_1(BC157696|pid:none) Xenopus tropicalis hypothetical pr... 268 4e-70
AM398681_665(AM398681|pid:none) Flavobacterium psychrophilum JIP... 264 4e-69
BT074744_1(BT074744|pid:none) Osmerus mordax clone omor-rgc-510-... 263 7e-69
T25813(T25813) hypothetical protein K10C2.4 - Caenorhabditis ele... 263 7e-69
BC044366_1(BC044366|pid:none) Danio rerio fumarylacetoacetate hy... 262 2e-68
protein update 2009. 5.26
PSORT

psg: 1.02 gvh: 0.50 alm: 0.19 top: 0.37 tms: 0.07 mit: 0.29 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

28.0 %: endoplasmic reticulum
16.0 %: mitochondrial
16.0 %: nuclear
16.0 %: cytoplasmic
8.0 %: Golgi
8.0 %: plasma membrane
4.0 %: extracellular, including cell wall
4.0 %: vesicles of secretory system

>> prediction for SFJ148 is end

5' end seq. ID SFJ148F
5' end seq.
>SFJ148F.Seq
AAAATTTTTTTATTTTGCATGATAAAGCTGTTCATTATTTTTTCATTTTTTTTTTTATTT
TTTAGNGTCATAATTCATCAAGCAAAACAACCACAACANGAACAACAACAACAAATGTCA
ATTTTAAAAAGTTTTATTGAAGTTAGNGAAGATTCACACTTTCCAATTCAAAATCTTCCA
TATGGNGTCTTTAAACCAACCCTAAATGATCAAGCTAGAATTGGNGTTGCTATTGGNGAT
TTCGTTTGNGATTTATCAGTTTTAGCAGATTTAAAACTTTTTGATGGTAAATTAAAAGAT
ACTAAAGTTTTTCATCAAGAAAATTTAAATTCATTTATGTCATTAGGTAAAGAATTATGG
AGNGAAGCTAGAAAAACCATTCAAAATTTATTATCATCAGAAACATCAACTNTTAGAGAT
AATAAAGAGTNTAGAGAAAAGATATTTCATTCAATTTCAAGNGTAACAATGTTATTACCA
GCAAGAATTGGAGATTATACTGATTTCTATGCATCAAAAGAACATGCAACCAATGTTGGT
ATTATGTTTAGAG----------
Length of 5' end seq. 553
3' end seq. ID SFJ148Z
3' end seq.
>SFJ148Z.Seq
----------GAGTCTGCAAAAGATCATATCTTTGGTTTGGTACTTTTGAATGATTGGAG
TGCAAGAGATATCCAAAAATGGGAATACGTTCCATTGGGTCCATTCTTGGCAAAGAATTT
CGGCTCAACTATATCACCATGGGTTGTTACAATGGAGGCATTGCAACCATTTGCTACAAA
ACCACCAACTCAAGATCCACAACCAATGAAATATCTTCAAGAACAAGGTAATACTACCTT
TGATATTGAATTATCAGTTAGTATTAAATCTCCAAAAATGTCAAAACCTCATAAGGTTTC
AACTTCAAATTTGAAATACATGTATTGGACACTCACTCAACAATTGGCTCATCATACTGT
AAATGGTTGTAATATGAATGCTGGTGATTTACTTGGTACTGGTACAATTAGTGGTCCAAC
TGAAGATAGCTATGGTTCAATGTTGGAACTCTCTTGGAAAGGTAGTAAAGTGGTCTCATT
AGGTACTGAAACAAATGAAGAAAGAAAATTCATTCAAGATGGTGATTCTGTTATCTTATC
TGGTCTTTGTAAAGGTAATGGTTATCAAATTGGTTTTGGTAATTGTGAAGGTACAATTTT
ACCAGCTGATAAACGTCAATAAAAAAAATTAATTAAATAAATAAATAAATAAAGAAAACT
ATTTTTAAAT
Length of 3' end seq. 660
Connected seq. ID SFJ148P
Connected seq.
>SFJ148P.Seq
AAAATTTTTTTATTTTGCATGATAAAGCTGTTCATTATTTTTTCATTTTTTTTTTTATTT
TTTAGNGTCATAATTCATCAAGCAAAACAACCACAACANGAACAACAACAACAAATGTCA
ATTTTAAAAAGTTTTATTGAAGTTAGNGAAGATTCACACTTTCCAATTCAAAATCTTCCA
TATGGNGTCTTTAAACCAACCCTAAATGATCAAGCTAGAATTGGNGTTGCTATTGGNGAT
TTCGTTTGNGATTTATCAGTTTTAGCAGATTTAAAACTTTTTGATGGTAAATTAAAAGAT
ACTAAAGTTTTTCATCAAGAAAATTTAAATTCATTTATGTCATTAGGTAAAGAATTATGG
AGNGAAGCTAGAAAAACCATTCAAAATTTATTATCATCAGAAACATCAACTNTTAGAGAT
AATAAAGAGTNTAGAGAAAAGATATTTCATTCAATTTCAAGNGTAACAATGTTATTACCA
GCAAGAATTGGAGATTATACTGATTTCTATGCATCAAAAGAACATGCAACCAATGTTGGT
ATTATGTTTAGAG----------GAGTCTGCAAAAGATCATATCTTTGGTTTGGTACTTT
TGAATGATTGGAGTGCAAGAGATATCCAAAAATGGGAATACGTTCCATTGGGTCCATTCT
TGGCAAAGAATTTCGGCTCAACTATATCACCATGGGTTGTTACAATGGAGGCATTGCAAC
CATTTGCTACAAAACCACCAACTCAAGATCCACAACCAATGAAATATCTTCAAGAACAAG
GTAATACTACCTTTGATATTGAATTATCAGTTAGTATTAAATCTCCAAAAATGTCAAAAC
CTCATAAGGTTTCAACTTCAAATTTGAAATACATGTATTGGACACTCACTCAACAATTGG
CTCATCATACTGTAAATGGTTGTAATATGAATGCTGGTGATTTACTTGGTACTGGTACAA
TTAGTGGTCCAACTGAAGATAGCTATGGTTCAATGTTGGAACTCTCTTGGAAAGGTAGTA
AAGTGGTCTCATTAGGTACTGAAACAAATGAAGAAAGAAAATTCATTCAAGATGGTGATT
CTGTTATCTTATCTGGTCTTTGTAAAGGTAATGGTTATCAAATTGGTTTTGGTAATTGTG
AAGGTACAATTTTACCAGCTGATAAACGTCAATAAAAAAAATTAATTAAATAAATAAATA
AATAAAGAAAACTATTTTTAAAT
Length of connected seq. 1213
Full length Seq ID -
Full length Seq. -
Length of full length seq. -