>SFJ144 (SFJ144Q) /CSM/SF/SFJ1-B/SFJ144Q.Seq.d/
XXXXXXXXXXACCAAAGAAAAGTTGGATGAAACTGCCAAGAAATGTGANCATTGGNCAGC
TGANCAAAAAGNGNACATATGTNNCNNATGTTCTGAATTAGCTANAGATGCNAATAANCC
CAAAGATCAATTAGCAGCGNATGCAGAGAAANCAGCTNAAAATNCCAAAGANAAGTTGGA
CGAACCNGCAAAGAAATGTGANCATTGGNCCGCTGAACANAAAGAANACATATGTAGCNA
ATGTTCTGNATTAACCNANGATACCAAAGAAGCCGCTGACCATGCCTCTGAAGCCGTTAA
AGCATGCTGCTGACAATCTAAATGATNAAGTTCAAAAGAAAGGTAGNAGGTAGACCANAG
AAACNTTAAACT

---KEKLDETAKKCXHWXAXQKXXICXXCSELAXDANXPKDQLAAXAEKXAXNXKXKLDE
PAKKCXHWXAEXKEXICSXCSXLTXDTKEAADHASEAVKACC*qsk*xssker*xvdxrn
xk

Frame A:
---pkkswmklprnvxigqlxkkxtyvxxvln*lxmxixpkin*qrmqrxqlkxpkxswt
nxqrnvxigplnxkxtyvanvlx*pxipkkpltmplkplkhaadnlndxvqkkgxr*txe
tln


Frame B:
---qrkvg*ncqem*xlxs*xkxxhmxxmf*isxrcx*xqrsissxcrexsxkxqrxvgr
txkem*xlxr*txrxhm*xmfxinxxyqrsr*pcl*sr*smllti*mxkfkrkvxgrpxk
x*t


Frame C:
---KEKLDETAKKCXHWXAXQKXXICXXCSELAXDANXPKDQLAAXAEKXAXNXKXKLDE
PAKKCXHWXAEXKEXICSXCSXLTXDTKEAADHASEAVKACC*qsk*xssker*xvdxrn
xk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFJ144 (SFJ144Q) /CSM/SF/SFJ1-B/SFJ144Q.Seq.d/                        539   e-152
SSD309 (SSD309Q) /CSM/SS/SSD3-A/SSD309Q.Seq.d/                        482   e-135
SLI814 (SLI814Q) /CSM/SL/SLI8-A/SLI814Q.Seq.d/                        482   e-135
SLB754 (SLB754Q) /CSM/SL/SLB7-C/SLB754Q.Seq.d/                        482   e-135
CHE742 (CHE742Q) /CSM/CH/CHE7-B/CHE742Q.Seq.d/                        472   e-132
AFL519 (AFL519Q) /CSM/AF/AFL5-A/AFL519Q.Seq.d/                        472   e-132
SLK586 (SLK586Q) /CSM/SL/SLK5-D/SLK586Q.Seq.d/                        468   e-131
SLH706 (SLH706Q) /CSM/SL/SLH7-A/SLH706Q.Seq.d/                        466   e-130
SLG517 (SLG517Q) /CSM/SL/SLG5-A/SLG517Q.Seq.d/                        466   e-130
SSA453 (SSA453Q) /CSM/SS/SSA4-C/SSA453Q.Seq.d/                        464   e-130

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AY044086|AY044086.1 Dictyostelium discoideum Rho GDP-dissociation inhibitor-like protein (rdiB) gene, complete cds; and unknown gene.   392   e-123  2
AC091550|AC091550.1 Homo sapiens chromosome 18 clone RP11-407C18 map 18, LOW-PASS SEQUENCE SAMPLING.    36   1.8    2
AZ156479|AZ156479.1 SP_0042_A1_F05_T7 Strongylocentrotus purpuratus, purple sea urchin, sperm genomic BAC library Strongylocentrotus purpuratus genomic clone Plate=42 Col=9 Row=K, DNA sequence.    42   5.2    1

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3101297
Number of Hits to DB: 314,532,377

 psg: 0.74  gvh: 0.48  alm: 0.59  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 32.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: cytoskeletal

>> prediction for SFJ144 is nuc

>SFJ144Z.Seq
----------ACCAAAGAAAAGTTGGATGAAACTGCCAAGAAATGTGANCATTGGNCAGC
TGANCAAAAAGNGNACATATGTNNCNNATGTTCTGAATTAGCTANAGATGCNAATAANCC
CAAAGATCAATTAGCAGCGNATGCAGAGAAANCAGCTNAAAATNCCAAAGANAAGTTGGA
CGAACCNGCAAAGAAATGTGANCATTGGNCCGCTGAACANAAAGAANACATATGTAGCNA
ATGTTCTGNATTAACCNANGATACCAAAGAAGCCGCTGACCATGCCTCTGAAGCCGTTAA
AGCATGCTGCTGACAATCTAAATGATNAAGTTCAAAAGAAAGGTAGNAGGTAGACCANAG
AAACNTTAAACT