SFJ142
Library SF
(Link to library)
Clone ID SFJ142
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14922-1
Original site URL
Representative seq. ID SFJ142P
(Link to Original site)
Representative DNA sequence
>SFJ142 (SFJ142Q) /CSM/SF/SFJ1-B/SFJ142Q.Seq.d/
AAATAATTATTGCACCTCACATTGATCATAGTGTTAATAAAAGTAAAATAATAGATAAGA
AAAATGTCAGATTATAATAGTAATCTTTTATTTGGAACTCAAGTCACATATGAAGACAAT
GGTGAAAATACTTTCGTTGGATTTTCAAACGAACCAATTGAATCAAGCAACCCATTTTTA
GCACCACCACAACAACAAGAACAACAAGAACAACCATCATATCCACAAGTTCAACAACAA
TATAGTAAAGAAAGAATACCAGCATCACAACCACCATCATATAATCCACCACAACCAACA
CAACAACAACAACAACAAACTAATAATAACGGAACAACAGTACAACAAAAACAAAGAACA
TCACAAAACTATCAACAACCACCACCACAACAACAACAACAAGTTAGTAATAATAGTAAT
TTCCAATCAAATTTTAAACCAACATTTACAACACCAGTTAATCAATTTATTTCAAACTCT
AGAACAAGCATGGATATTACAGTTAATTTCCCAGATATGGTAGGAGAAGGTATGGGTGCC
TATGCTATCTATAAGATCGTTACAAAATCAGCCCTCAATGAGAACCCAGATTATAAAAAA
GAAGTTTCTGTAAATCGTCGTTATTCTGACTXXXXXXXXXXCTTACAATTGGATTCAACA
CTACATCGTTTAGAGGATACAATTAACAATGTCATTAGAAAACGTAGAGAGTTGGCCGCT
GCAATGGGTGAACTTACATCTGCAGGTTTATCATTCTCCTCTTGTGAGATTCCAGTTCGT
CAAGATATCGCCAATGGTTATCAACGTTTAACCGAGGGTTGAAAACAATATTAGACAGGG
TATGGAAGATCTTTCAAACAATGAACAAGGCTACTTTGAAGAGGGTATCAGAGATTATCT
TCGTGCAATCTCATCCGTTAAGGAATTATTAAACGATCGTTTGGACGCTTTAATGTCAAT
GCAAAACAATGAACGTAATGTCGCTGCCAAGAAAGAAAAAGCCGCAAAAACAACTGGTGC
AAAGGCTGCCAATATGCAAAAGGAAGTTGATGATGCCGTTAGAAAATTAACTGAAGCCAC
CACTGAATATGAAAAGATCTCTGCCTCTGCTCGTCTTGAACTTACAAAATTCGATGAAAA
GAGAGCTTACGAAATGAAGAGAATCTTAAACTATGTCATTCGTTTAAATTTAGATCACTT
CTTAAAATCTTCTGATTGTTGGAGAGAACTTTTAACTGAACAACACTCAAATGGGATCCA
AATTTCGATTCTAAAAATAAAGCTTCNGGGGGTTCAAC
sequence update 2001. 6. 1
Translated Amino Acid sequence
k*llhltliivlikvk**IRKMSDYNSNLLFGTQVTYEDNGENTFVGFSNEPIESSNPFL
APPQQQEQQEQPSYPQVQQQYSKERIPASQPPSYNPPQPTQQQQQQTNNNGTTVQQKQRT
SQNYQQPPPQQQQQVSNNSNFQSNFKPTFTTPVNQFISNSRTSMDITVNFPDMVGEGMGA
YAIYKIVTKSALNENPDYKKEVSVNRRYSD---

---LQLDSTLHRLEDTINNVIRKRRELAAAMGELTSAGLSFSSCEIPVRQDIANGYQRLT
EG*kqy*tgygrsfkq*trll*rgyqrlsscnlir*giikrsfgrfnvnakq*t*crcqe
rksrknnwckgcqyakgs**cr*kin*shh*i*kdlclcss*tykir*keslrneenlkl
chsfkfrsllkif*llertfn*ttlkwdpnfdsknkasggs


Translated Amino Acid sequence (All Frames)
Frame A:
k*llhltliivlikvk**IRKMSDYNSNLLFGTQVTYEDNGENTFVGFSNEPIESSNPFL
APPQQQEQQEQPSYPQVQQQYSKERIPASQPPSYNPPQPTQQQQQQTNNNGTTVQQKQRT
SQNYQQPPPQQQQQVSNNSNFQSNFKPTFTTPVNQFISNSRTSMDITVNFPDMVGEGMGA
YAIYKIVTKSALNENPDYKKEVSVNRRYSD---

---ltigfnttsfrgyn*qch*kt*rvgrcng*tyicrfiilll*dssssryrqwlstfn
rglktildrvwkifqtmnkatlkrvseiifvqshplrny*tivwtl*cqcktmnvmslpr
kkkpqkqlvqrlpickrklmmplen*lkpplnmkrslpllvlnlqnsmkreltk*res*t
msfv*i*its*nllivgenf*lnntqmgskfrf*k*sfxgfn

Frame B:
nnyctsh*s*c**k*nnr*ekcqiiivifylelkshmktmvkilsldfqtnqlnqathf*
hhhnnknnknnhhihkfnnnivkkeyqhhnhhhiihhnqhnnnnnkliiteqqynknkeh
hktinnhhhnnnnklviivisnqilnqhlqhqlinlfqtleqawilqlisqiw*ekvwvp
mlsirslqnqpsmrtqiikkkfl*ivvilt---

---LQLDSTLHRLEDTINNVIRKRRELAAAMGELTSAGLSFSSCEIPVRQDIANGYQRLT
EG*kqy*tgygrsfkq*trll*rgyqrlsscnlir*giikrsfgrfnvnakq*t*crcqe
rksrknnwckgcqyakgs**cr*kin*shh*i*kdlclcss*tykir*keslrneenlkl
chsfkfrsllkif*llertfn*ttlkwdpnfdsknkasggs

Frame C:
iiiaphidhsvnkskiidkknvrl***sfiwnsshi*rqw*kyfrwifkrtn*ikqpifs
tttttrttrttiistsstti**rkntsitttii*stttnttttttn***rnnsttktkni
tklsttttttttts*****fpikf*tniynts*siyfkl*nkhgyys*fprygrrrygcl
cyl*drykispq*eprl*krsfcksslf*---

---ynwiqhyiv*riqltmslenveswplqwvnlhlqvyhsplvrfqfvkispmvinv*p
rvennirqgmedlsnneqgyfeegirdylraissvkellndrldalmsmqnnernvaakk
ekaakttgakaanmqkevddavrklteatteyekisasarleltkfdekrayemkrilny
virlnldhflkssdcwrellteqhsngiqisilkiklxgvq

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SFJ142 (SFJ142Q) /CSM/SF/SFJ1-B/SFJ142Q.Seq.d/ 1711 0.0
CFC134 (CFC134Q) /CSM/CF/CFC1-B/CFC134Q.Seq.d/ 1273 0.0
AFG761 (AFG761Q) /CSM/AF/AFG7-C/AFG761Q.Seq.d/ 1259 0.0
AFH591 (AFH591Q) /CSM/AF/AFH5-D/AFH591Q.Seq.d/ 1253 0.0
AFH551 (AFH551Q) /CSM/AF/AFH5-C/AFH551Q.Seq.d/ 1253 0.0
AFM750 (AFM750Q) /CSM/AF/AFM7-C/AFM750Q.Seq.d/ 1251 0.0
AHN763 (AHN763Q) /CSM/AH/AHN7-C/AHN763Q.Seq.d/ 1245 0.0
AFB893 (AFB893Q) /CSM/AF/AFB8-D/AFB893Q.Seq.d/ 1227 0.0
AFB758 (AFB758Q) /CSM/AF/AFB7-C/AFB758Q.Seq.d/ 1227 0.0
AFJ383 (AFJ383Q) /CSM/AF/AFJ3-D/AFJ383Q.Seq.d/ 1183 0.0

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence. 860 0.0 13
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence. 46 3e-09 19
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 50 7e-07 20
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence. 50 1e-05 17
AC073820|AC073820.1 Mus musculus clone RP23-77O17, WORKING DRAFT SEQUENCE, 34 unordered pieces. 62 2e-05 1
AL691427|AL691427.15 Mouse DNA sequence from clone RP23-317I15 on chromosome 3. 54 9e-05 7
AE003454|AE003454.3 Drosophila melanogaster chromosome 2R, section 62 of 74 of the complete sequence. 50 2e-04 7
AC115599|AC115599.2 Dictyostelium discoideum chromosome 2 map 4229098-4354721 strain AX4, complete sequence. 46 2e-04 7
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 48 3e-04 17
AC117080|AC117080.2 Dictyostelium discoideum chromosome 2 map complement(821514-735598) strain AX4, complete sequence. 48 4e-04 11
dna update 2004. 1. 5
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AY927788_1(AY927788|pid:none) Acetabularia acetabulum sorting ne... 50 1e-04
T31063(T31063) hypothetical protein C05D9.1 - Caenorhabditis ele... 44 4e-04
AE014134_623(AE014134|pid:none) Drosophila melanogaster chromoso... 40 0.001
BC150242_1(BC150242|pid:none) Danio rerio sorting nexin 1, mRNA ... 46 0.003
BC163869_1(BC163869|pid:none) Danio rerio sorting nexin 1, mRNA ... 46 0.003
AK023716_1(AK023716|pid:none) Homo sapiens cDNA FLJ13654 fis, cl... 42 0.046
AY272044_1(AY272044|pid:none) Homo sapiens transformation-relate... 42 0.046
AK010572_1(AK010572|pid:none) Mus musculus ES cells cDNA, RIKEN ... 42 0.046
BC006960_1(BC006960|pid:none) Mus musculus sorting nexin 2, mRNA... 42 0.046
AF065482_1(AF065482|pid:none) Homo sapiens sorting nexin 2 (SNX2... 42 0.046
protein update 2009. 5.26
PSORT

psg: 0.87 gvh: 0.34 alm: 0.46 top: 0.13 tms: 0.00 mit: 0.33 mip: 0.02
nuc: 0.04 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: cytoplasmic
24.0 %: nuclear
8.0 %: mitochondrial
8.0 %: vacuolar
4.0 %: extracellular, including cell wall
4.0 %: cytoskeletal
4.0 %: endoplasmic reticulum
4.0 %: vesicles of secretory system

>> prediction for SFJ142 is cyt

5' end seq. ID SFJ142F
5' end seq.
>SFJ142F.Seq
AAATAATTATTGCACCTCACATTGATCATAGTGTTAATAAAAGTAAAATAATAGATAAGA
AAAATGTCAGATTATAATAGTAATCTTTTATTTGGAACTCAAGTCACATATGAAGACAAT
GGTGAAAATACTTTCGTTGGATTTTCAAACGAACCAATTGAATCAAGCAACCCATTTTTA
GCACCACCACAACAACAAGAACAACAAGAACAACCATCATATCCACAAGTTCAACAACAA
TATAGTAAAGAAAGAATACCAGCATCACAACCACCATCATATAATCCACCACAACCAACA
CAACAACAACAACAACAAACTAATAATAACGGAACAACAGTACAACAAAAACAAAGAACA
TCACAAAACTATCAACAACCACCACCACAACAACAACAACAAGTTAGTAATAATAGTAAT
TTCCAATCAAATTTTAAACCAACATTTACAACACCAGTTAATCAATTTATTTCAAACTCT
AGAACAAGCATGGATATTACAGTTAATTTCCCAGATATGGTAGGAGAAGGTATGGGTGCC
TATGCTATCTATAAGATCGTTACAAAATCAGCCCTCAATGAGAACCCAGATTATAAAAAA
GAAGTTTCTGTAAATCGTCGTTATTCTGACT----------
Length of 5' end seq. 631
3' end seq. ID SFJ142Z
3' end seq.
>SFJ142Z.Seq
----------CTTACAATTGGATTCAACACTACATCGTTTAGAGGATACAATTAACAATG
TCATTAGAAAACGTAGAGAGTTGGCCGCTGCAATGGGTGAACTTACATCTGCAGGTTTAT
CATTCTCCTCTTGTGAGATTCCAGTTCGTCAAGATATCGCCAATGGTTATCAACGTTTAA
CCGAGGGTTGAAAACAATATTAGACAGGGTATGGAAGATCTTTCAAACAATGAACAAGGC
TACTTTGAAGAGGGTATCAGAGATTATCTTCGTGCAATCTCATCCGTTAAGGAATTATTA
AACGATCGTTTGGACGCTTTAATGTCAATGCAAAACAATGAACGTAATGTCGCTGCCAAG
AAAGAAAAAGCCGCAAAAACAACTGGTGCAAAGGCTGCCAATATGCAAAAGGAAGTTGAT
GATGCCGTTAGAAAATTAACTGAAGCCACCACTGAATATGAAAAGATCTCTGCCTCTGCT
CGTCTTGAACTTACAAAATTCGATGAAAAGAGAGCTTACGAAATGAAGAGAATCTTAAAC
TATGTCATTCGTTTAAATTTAGATCACTTCTTAAAATCTTCTGATTGTTGGAGAGAACTT
TTAACTGAACAACACTCAAATGGGATCCAAATTTCGATTCTAAAAATAAAGCTTCNGGGG
GTTCAAC
Length of 3' end seq. 657
Connected seq. ID SFJ142P
Connected seq.
>SFJ142P.Seq
AAATAATTATTGCACCTCACATTGATCATAGTGTTAATAAAAGTAAAATAATAGATAAGA
AAAATGTCAGATTATAATAGTAATCTTTTATTTGGAACTCAAGTCACATATGAAGACAAT
GGTGAAAATACTTTCGTTGGATTTTCAAACGAACCAATTGAATCAAGCAACCCATTTTTA
GCACCACCACAACAACAAGAACAACAAGAACAACCATCATATCCACAAGTTCAACAACAA
TATAGTAAAGAAAGAATACCAGCATCACAACCACCATCATATAATCCACCACAACCAACA
CAACAACAACAACAACAAACTAATAATAACGGAACAACAGTACAACAAAAACAAAGAACA
TCACAAAACTATCAACAACCACCACCACAACAACAACAACAAGTTAGTAATAATAGTAAT
TTCCAATCAAATTTTAAACCAACATTTACAACACCAGTTAATCAATTTATTTCAAACTCT
AGAACAAGCATGGATATTACAGTTAATTTCCCAGATATGGTAGGAGAAGGTATGGGTGCC
TATGCTATCTATAAGATCGTTACAAAATCAGCCCTCAATGAGAACCCAGATTATAAAAAA
GAAGTTTCTGTAAATCGTCGTTATTCTGACT----------CTTACAATTGGATTCAACA
CTACATCGTTTAGAGGATACAATTAACAATGTCATTAGAAAACGTAGAGAGTTGGCCGCT
GCAATGGGTGAACTTACATCTGCAGGTTTATCATTCTCCTCTTGTGAGATTCCAGTTCGT
CAAGATATCGCCAATGGTTATCAACGTTTAACCGAGGGTTGAAAACAATATTAGACAGGG
TATGGAAGATCTTTCAAACAATGAACAAGGCTACTTTGAAGAGGGTATCAGAGATTATCT
TCGTGCAATCTCATCCGTTAAGGAATTATTAAACGATCGTTTGGACGCTTTAATGTCAAT
GCAAAACAATGAACGTAATGTCGCTGCCAAGAAAGAAAAAGCCGCAAAAACAACTGGTGC
AAAGGCTGCCAATATGCAAAAGGAAGTTGATGATGCCGTTAGAAAATTAACTGAAGCCAC
CACTGAATATGAAAAGATCTCTGCCTCTGCTCGTCTTGAACTTACAAAATTCGATGAAAA
GAGAGCTTACGAAATGAAGAGAATCTTAAACTATGTCATTCGTTTAAATTTAGATCACTT
CTTAAAATCTTCTGATTGTTGGAGAGAACTTTTAACTGAACAACACTCAAATGGGATCCA
AATTTCGATTCTAAAAATAAAGCTTCNGGGGGTTCAAC
Length of connected seq. 1288
Full length Seq ID -
Full length Seq. -
Length of full length seq. -