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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFJ120
Library SF
(Link to library)
Clone ID SFJ120
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15057-1
Original site URL
Representative seq. ID SFJ120P
(Link to Original site)
Representative DNA sequence 
>SFJ120 (SFJ120Q) /CSM/SF/SFJ1-A/SFJ120Q.Seq.d/
CACTGTTGGCCTACTGGNATTTTTTTTTTATTTTATTTTTATTTATAGAATCAATAATAA
TAATAAATAAGTAAAAATAAAAAAATGAAATTAATAAATCTTGTAATTTATTTTTTTCTT
TTTGGAATAGTATATTCTCAACCACCACAACCACACTATGGTGTATTTGAATTATCAGCA
TTACGTGGTGGAGAAAATAAACTTCTGTATAGGGGTGCCAATCTAAAAGCTTTTTCTCAA
ACACCAGCTAGACCAGGAGTGATTGTTACTTTTTTCAGATACAATGGAGGTATTGACATT
TACTATTCCCATAGGATACAAATTGTTGCAAATCTTGAAGAGTCAGCGCGTGTAATGACC
CAAACTCCAAATAATATGGCTACTAGTGGTAGAATTGTTTCATATGCTTATCAAGAGATA
TCTACCCAGGTTTTCAATGGACTAAATGTTGGCAATTTGAATGCTCTAATCAATGGACCC
AATTTAGTAACACCAGCTGGGCCATTTATTCCACATGGAAGGTTGATTAATGTCCTTGCA
CTTTTGGCGAGATGGATTAGATTAAATTTTTCAACAAATATACAAATCATTGAATTCATT
GATGATCATCCAAXXXXXXXXXXAGTCACTGGTGTAAATATTTGGAATAAAGCCAAAAGT
ATTTTCAGCCATGGTAAAGAAGCTGCCAGTAGTAAAACAAGTGCTGCCGTTGTAAAAGTT
GAAAATGAAGGTAAAGCAGTTGTCAAAGCTGGTGAATCCGTTGTAAGTACTGTGAAAAAT
GATGGTAAGGCAGTTGTCAATGCTGGCGAATCTGTTGTAACCTCTGTGAAAAATGAAGGT
AAGGCAGTTGTCAATGCTGGTGAATCCGTTGTAACCTCTGTAAAAAATAATGGTAAGGCA
GTTGTCAATGCTGGTGAATCCGTTGTAACCTCTGTGAAAAATGAAGGTAAGGCAGTTGTC
AATGCTGGTGGATCTGTTGTAACCTCTGTAAAAAATAATGGTAAGGCAGTTGTCAATGCT
GGTGAAACTGTTGTTCAAACTGTGAAAAAAGAAGCCTCAGTCATTGTGAAAACTGGTGAA
ACTGTTATTGATTCCACAAGAAAAGGAGGCGCTGCATTTGTTTCTGAAGGTGGTGCTGCA
ATTGCTGATATTGAAAAAAATGGTGCAC
sequence update 2001. 6. 1
Translated Amino Acid sequence 
hcwptgifflfyfyl*nq****ISKNKKMKLINLVIYFFLFGIVYSQPPQPHYGVFELSA
LRGGENKLLYRGANLKAFSQTPARPGVIVTFFRYNGGIDIYYSHRIQIVANLEESARVMT
QTPNNMATSGRIVSYAYQEISTQVFNGLNVGNLNALINGPNLVTPAGPFIPHGRLINVLA
LLARWIRLNFSTNIQIIEFIDDHP---

---VTGVNIWNKAKSIFSHGKEAASSKTSAAVVKVENEGKAVVKAGESVVSTVKNDGKAV
VNAGESVVTSVKNEGKAVVNAGESVVTSVKNNGKAVVNAGESVVTSVKNEGKAVVNAGGS
VVTSVKNNGKAVVNAGETVVQTVKKEASVIVKTGETVIDSTRKGGAAFVSEGGAAIADIE
KNGA
Translated Amino Acid sequence (All Frames) 
Frame A:
hcwptgifflfyfyl*nq****ISKNKKMKLINLVIYFFLFGIVYSQPPQPHYGVFELSA
LRGGENKLLYRGANLKAFSQTPARPGVIVTFFRYNGGIDIYYSHRIQIVANLEESARVMT
QTPNNMATSGRIVSYAYQEISTQVFNGLNVGNLNALINGPNLVTPAGPFIPHGRLINVLA
LLARWIRLNFSTNIQIIEFIDDHP---

---shwckyle*sqkyfqpw*rscq**nkccrcks*k*r*sscqsw*irckycek*w*gs
cqcwriccnlcek*r*gscqcw*ircnlckk*w*gscqcw*ircnlcek*r*gscqcwwi
ccnlckk*w*gscqcw*nccsncekrslshcenw*ncy*fhkkrrrcicf*rwccnc*y*
kkwc

Frame B:
tvgllxfffyfifiyrinnnnk*vkikk*n**il*fifffle*yilnhhnhtmvylnyqh
yvvekinfcigvpi*klflkhqldqe*lllfsdtmevltftipigykllqilksqrv**p
klqiiwllvvelfhmlikrylprfsmd*mlai*ml*smdpi**hqlghlfhmeg*lmslh
fwrdgld*ifqqiykslnslmiiq---

---VTGVNIWNKAKSIFSHGKEAASSKTSAAVVKVENEGKAVVKAGESVVSTVKNDGKAV
VNAGESVVTSVKNEGKAVVNAGESVVTSVKNNGKAVVNAGESVVTSVKNEGKAVVNAGGS
VVTSVKNNGKAVVNAGETVVQTVKKEASVIVKTGETVIDSTRKGGAAFVSEGGAAIADIE
KNGA

Frame C:
llaywxfffilflfiesiiiink*k*kneinkscnlffsfwnsifstttttlwci*iisi
twwrk*tsv*gcqsksffsnts*trsdcyffqiqwry*hllfp*dtnccks*rvsacndp
nsk*ygy*w*ncficlsrdiypgfqwtkcwqfecsnqwtqfsntswaiystwkvd*cpct
fgemd*ikffnkytnh*ih**ss---

---slv*ifgikpkvfsamvkklpvvkqvlpl*klkmkvkqlsklvnpl*vl*kmmvrql
smlanll*pl*kmkvrqlsmlvnpl*pl*kimvrqlsmlvnpl*pl*kmkvrqlsmlvdl
l*pl*kimvrqlsmlvkllfkl*kkkpqsl*klvklllipqekealhlflkvvlqllilk
kmvh
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFJ120 (SFJ120Q) /CSM/SF/SFJ1-A/SFJ120Q.Seq.d/                       1982   0.0
SFG511 (SFG511Q) /CSM/SF/SFG5-A/SFG511Q.Seq.d/                       1051   0.0
SFF453 (SFF453Q) /CSM/SF/SFF4-C/SFF453Q.Seq.d/                       1051   0.0
CHD584 (CHD584Q) /CSM/CH/CHD5-D/CHD584Q.Seq.d/                       1051   0.0
CHD107 (CHD107Q) /CSM/CH/CHD1-A/CHD107Q.Seq.d/                       1051   0.0
CHC855 (CHC855Q) /CSM/CH/CHC8-C/CHC855Q.Seq.d/                       1051   0.0
CFI752 (CFI752Q) /CSM/CF/CFI7-C/CFI752Q.Seq.d/                       1051   0.0
CFI211 (CFI211Q) /CSM/CF/CFI2-A/CFI211Q.Seq.d/                       1051   0.0
CHC426 (CHC426Q) /CSM/CH/CHC4-B/CHC426Q.Seq.d/                       1043   0.0
CFH413 (CFH413Q) /CSM/CF/CFH4-A/CFH413Q.Seq.d/                       1043   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF106592|AF106592.1 Caenorhabditis elegans cosmid D1037, complete sequence.    38   0.055  5
BZ280484|BZ280484.1 CH230-480C10.TJ CHORI-230 Segment 2 Rattus norvegicus genomic clone CH230-480C10, DNA sequence.    42   0.18   2
AP004287|AP004287.2 Homo sapiens genomic DNA, chromosome 8q23, clone: KB1471H7.    34   0.21   8
AC008572|AC008572.6 Homo sapiens chromosome 5 clone CTC-551A13, complete sequence.    34   0.67   9
AC108057|AC108057.3 Homo sapiens BAC clone RP11-374N13 from 2, complete sequence.    36   1.1    8
CA304740|CA304740.1 As_adfo_21G05_T3 Ascaris suum adult female ovary Ascaris suum cDNA clone As_adfo_21G05 5', mRNA sequence.    46   1.1    1
CA305082|CA305082.1 As_adfo_27F02_T3 Ascaris suum adult female ovary Ascaris suum cDNA clone As_adfo_27F02 5', mRNA sequence.    46   1.1    1
BX842603|BX842603.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: B1159F04.    36   1.9    5
AC128439|AC128439.2 Rattus norvegicus clone CH230-206J7, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    32   2.0    2
AC095129|AC095129.6 Rattus norvegicus clone CH230-8E13, WORKING DRAFT SEQUENCE, 2 unordered pieces.    32   2.0    2
dna update 2004. 1. 4
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE016817_40(AE016817|pid:none) Ashbya gossypii (= Eremothecium g...    68   5e-10
CR767821_118(CR767821|pid:none) Ehrlichia ruminantium strain Wel...    64   1e-08
CR925678_108(CR925678|pid:none) Ehrlichia ruminantium str. Welge...    62   3e-08
CP000394_1605(CP000394|pid:none) Granulibacter bethesdensis CGDN...    61   6e-08
CP000394_1603(CP000394|pid:none) Granulibacter bethesdensis CGDN...    60   1e-07
CP000617_291(CP000617|pid:none) Burkholderia vietnamiensis G4 pl...    57   2e-06
AF308673_2(AF308673|pid:none) Cowdria ruminantium clone 26hw hyp...    57   2e-06
CP000783_2025(CP000783|pid:none) Enterobacter sakazakii ATCC BAA...    55   5e-06
AE014075_3573(AE014075|pid:none) Escherichia coli CFT073, comple...    54   1e-05
AE005674_2993(AE005674|pid:none) Shigella flexneri 2a str. 301, ...    54   1e-05
protein update 2009. 5.26
PSORT 

 psg: 0.98  gvh: 0.66  alm: 0.41  top: 0.17  tms: 0.00  mit: 0.24  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: extracellular, including cell wall
	 20.0 %: cytoplasmic
	 12.0 %: vacuolar
	  8.0 %: nuclear
	  8.0 %: endoplasmic reticulum
	  4.0 %: mitochondrial
	  4.0 %: vesicles of secretory system

>> prediction for SFJ120 is exc
5' end seq. ID SFJ120F
5' end seq. 
>SFJ120F.Seq
CACTGTTGGCCTACTGGNATTTTTTTTTTATTTTATTTTTATTTATAGAATCAATAATAA
TAATAAATAAGTAAAAATAAAAAAATGAAATTAATAAATCTTGTAATTTATTTTTTTCTT
TTTGGAATAGTATATTCTCAACCACCACAACCACACTATGGTGTATTTGAATTATCAGCA
TTACGTGGTGGAGAAAATAAACTTCTGTATAGGGGTGCCAATCTAAAAGCTTTTTCTCAA
ACACCAGCTAGACCAGGAGTGATTGTTACTTTTTTCAGATACAATGGAGGTATTGACATT
TACTATTCCCATAGGATACAAATTGTTGCAAATCTTGAAGAGTCAGCGCGTGTAATGACC
CAAACTCCAAATAATATGGCTACTAGTGGTAGAATTGTTTCATATGCTTATCAAGAGATA
TCTACCCAGGTTTTCAATGGACTAAATGTTGGCAATTTGAATGCTCTAATCAATGGACCC
AATTTAGTAACACCAGCTGGGCCATTTATTCCACATGGAAGGTTGATTAATGTCCTTGCA
CTTTTGGCGAGATGGATTAGATTAAATTTTTCAACAAATATACAAATCATTGAATTCATT
GATGATCATCCAA----------
Length of 5' end seq. 613
3' end seq. ID SFJ120Z
3' end seq. 
>SFJ120Z.Seq
----------AGTCACTGGTGTAAATATTTGGAATAAAGCCAAAAGTATTTTCAGCCATG
GTAAAGAAGCTGCCAGTAGTAAAACAAGTGCTGCCGTTGTAAAAGTTGAAAATGAAGGTA
AAGCAGTTGTCAAAGCTGGTGAATCCGTTGTAAGTACTGTGAAAAATGATGGTAAGGCAG
TTGTCAATGCTGGCGAATCTGTTGTAACCTCTGTGAAAAATGAAGGTAAGGCAGTTGTCA
ATGCTGGTGAATCCGTTGTAACCTCTGTAAAAAATAATGGTAAGGCAGTTGTCAATGCTG
GTGAATCCGTTGTAACCTCTGTGAAAAATGAAGGTAAGGCAGTTGTCAATGCTGGTGGAT
CTGTTGTAACCTCTGTAAAAAATAATGGTAAGGCAGTTGTCAATGCTGGTGAAACTGTTG
TTCAAACTGTGAAAAAAGAAGCCTCAGTCATTGTGAAAACTGGTGAAACTGTTATTGATT
CCACAAGAAAAGGAGGCGCTGCATTTGTTTCTGAAGGTGGTGCTGCAATTGCTGATATTG
AAAAAAATGGTGCAC
Length of 3' end seq. 545
Connected seq. ID SFJ120P
Connected seq. 
>SFJ120P.Seq
CACTGTTGGCCTACTGGNATTTTTTTTTTATTTTATTTTTATTTATAGAATCAATAATAA
TAATAAATAAGTAAAAATAAAAAAATGAAATTAATAAATCTTGTAATTTATTTTTTTCTT
TTTGGAATAGTATATTCTCAACCACCACAACCACACTATGGTGTATTTGAATTATCAGCA
TTACGTGGTGGAGAAAATAAACTTCTGTATAGGGGTGCCAATCTAAAAGCTTTTTCTCAA
ACACCAGCTAGACCAGGAGTGATTGTTACTTTTTTCAGATACAATGGAGGTATTGACATT
TACTATTCCCATAGGATACAAATTGTTGCAAATCTTGAAGAGTCAGCGCGTGTAATGACC
CAAACTCCAAATAATATGGCTACTAGTGGTAGAATTGTTTCATATGCTTATCAAGAGATA
TCTACCCAGGTTTTCAATGGACTAAATGTTGGCAATTTGAATGCTCTAATCAATGGACCC
AATTTAGTAACACCAGCTGGGCCATTTATTCCACATGGAAGGTTGATTAATGTCCTTGCA
CTTTTGGCGAGATGGATTAGATTAAATTTTTCAACAAATATACAAATCATTGAATTCATT
GATGATCATCCAA----------AGTCACTGGTGTAAATATTTGGAATAAAGCCAAAAGT
ATTTTCAGCCATGGTAAAGAAGCTGCCAGTAGTAAAACAAGTGCTGCCGTTGTAAAAGTT
GAAAATGAAGGTAAAGCAGTTGTCAAAGCTGGTGAATCCGTTGTAAGTACTGTGAAAAAT
GATGGTAAGGCAGTTGTCAATGCTGGCGAATCTGTTGTAACCTCTGTGAAAAATGAAGGT
AAGGCAGTTGTCAATGCTGGTGAATCCGTTGTAACCTCTGTAAAAAATAATGGTAAGGCA
GTTGTCAATGCTGGTGAATCCGTTGTAACCTCTGTGAAAAATGAAGGTAAGGCAGTTGTC
AATGCTGGTGGATCTGTTGTAACCTCTGTAAAAAATAATGGTAAGGCAGTTGTCAATGCT
GGTGAAACTGTTGTTCAAACTGTGAAAAAAGAAGCCTCAGTCATTGTGAAAACTGGTGAA
ACTGTTATTGATTCCACAAGAAAAGGAGGCGCTGCATTTGTTTCTGAAGGTGGTGCTGCA
ATTGCTGATATTGAAAAAAATGGTGCAC
Length of connected seq. 1158
Full length Seq ID -
Full length Seq. -
Length of full length seq. -