SFJ116
Library SF
(Link to library)
Clone ID SFJ116
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID SFJ116P
(Link to Original site)
Representative DNA sequence
>SFJ116 (SFJ116Q) /CSM/SF/SFJ1-A/SFJ116Q.Seq.d/
ATATTGTATTTTTAACACACCAAATATATATTTATATTTATATATTTATATATTTTTTTT
TATTTTATTTTCACACCCTATTCTATATAAATTAATTTTTTTTTTTTTTANCACCAAATT
AAAAAAAAAAXXXXXXXXXXTATATGCTTAATAAACCAATTGAAAATATTGTTTTCGATG
AAGAAAAGAAAATTATTAAAGTTACATCTGAAGGTGAAACTGTAACATGTGATAAAATTG
TTTGTGATCCATCATATTTCCCAAATAAAGTTCAAAANAAAGGTAAAATTATTCGTTCAA
TTTGTATTTTGAATGGTCCAATTCCATCTGCTGATAANAAATTTGAATCACTCCAAATCA
TTATCCCNCAAAAACAAGTTAAACGTCAATCANATATGTACGTTGGTGTTATGTCATCCG
CTCATTGTGTCTGTCCAAAGGGTAAANACATTGCCATCGTTTCAGCCNCTGTTGAAACCA
ATGAACCANANAAANAATTAGCNCCAGCTTACGCTTTATTAGGTCCAATTCAANANAAAT
TTGTCTATATTTCTGATTTCATTGAACCAATTGCTGATGGNACTGCCGACAATGTTTTCA
TCTCAAAATCATATGATGCTACCTCTCNCTTTGAAACCNCNTGTGAAGATGTCATGGATA
TGNACAANAGAATCNCTGGTAAAGATTTAGTTCNCNCTGTTCANCCAAATATTCTTAAAC
AACAAGAANAAGCTGGNAACCAAGAACAAGAAGAACAATAAAAAAAAAAATAAAAAAATA
AAAATAAAAAAATAAAAATAAAAAAAATAAATAAAAAAATTAAATTATAATAA
sequence update 2001. 6. 1
Translated Amino Acid sequence
YCIFNTPNIYLYLYIYIFFFILFSHPILYKLIFFFFXTKLKKK---

---YMLNKPIENIVFDEEKKIIKVTSEGETVTCDKIVCDPSYFPNKVQXKGKIIRSICIL
NGPIPSADXKFESLQIIIPQKQVKRQSXMYVGVMSSAHCVCPKGKXIAIVSAXVETNEPX
KXLAPAYALLGPIQXKFVYISDFIEPIADGTADNVFISKSYDATSXFETXCEDVMDMXXR
IXGKDLVXXVXPNILKQQEXAGNQEQEEQ*kkk*knknkkikikkinkkikl**


Translated Amino Acid sequence (All Frames)
Frame A:
ilyf*htkyififiylyiffyfiftpysi*inffffxhqikkk---

---YMLNKPIENIVFDEEKKIIKVTSEGETVTCDKIVCDPSYFPNKVQXKGKIIRSICIL
NGPIPSADXKFESLQIIIPQKQVKRQSXMYVGVMSSAHCVCPKGKXIAIVSAXVETNEPX
KXLAPAYALLGPIQXKFVYISDFIEPIADGTADNVFISKSYDATSXFETXCEDVMDMXXR
IXGKDLVXXVXPNILKQQEXAGNQEQEEQ*kkk*knknkkikikkinkkikl**

Frame B:
YCIFNTPNIYLYLYIYIFFFILFSHPILYKLIFFFFXTKLKKK---

---iclinqlkilfsmkkrkllklhlkvkl*hviklfvihhisqikfkxkvklfvqfvf*
mvqfhllixnlnhskslsxknklnvnxictlvlchplivsvqrvxtlpsfqpllkpmnxx
xn*xqltly*vqfxxnlsiflislnqllmxlptmfssqnhmmlplxlkpxvkmswixtxe
slvki*fxlfxqiflnnkxklxtknkknnkkknkkikikk*k*kk*ikklnyn

Frame C:
ivflthqiyiyiyifiyfflfyfhtlfyin*fffflxpn*kk---

---ya**tn*kycfr*rkeny*syi*r*ncnm**ncl*siifpk*sskxr*nysfnlyfe
wsnsic**xi*itpnhypxkts*tsixyvrwcyvirslclskg*xhchrfsxc*nq*txx
xisxslrfirsnsxxiclyf*fh*tnc*wxcrqcfhlkii*cylsl*nxx*rchgyxqxn
xw*rfssxcsxkys*ttrxswxprtrrtikkkikk*k*knknkknk*kn*iii

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SFJ116 (SFJ116Q) /CSM/SF/SFJ1-A/SFJ116Q.Seq.d/ 1043 0.0
SSD420 (SSD420Q) /CSM/SS/SSD4-A/SSD420Q.Seq.d/ 1023 0.0
SFI510 (SFI510Q) /CSM/SF/SFI5-A/SFI510Q.Seq.d/ 1023 0.0
SFE141 (SFE141Q) /CSM/SF/SFE1-B/SFE141Q.Seq.d/ 1015 0.0
SFD219 (SFD219Q) /CSM/SF/SFD2-A/SFD219Q.Seq.d/ 1013 0.0
AFN874 (AFN874Q) /CSM/AF/AFN8-D/AFN874Q.Seq.d/ 1009 0.0
SFJ449 (SFJ449Q) /CSM/SF/SFJ4-C/SFJ449Q.Seq.d/ 1005 0.0
CFC760 (CFC760Q) /CSM/CF/CFC7-C/CFC760Q.Seq.d/ 1005 0.0
AFM447 (AFM447Q) /CSM/AF/AFM4-B/AFM447Q.Seq.d/ 1005 0.0
SFL394 (SFL394Q) /CSM/SF/SFL3-D/SFL394Q.Seq.d/ 999 0.0

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

BI315670|BI315670.1 saf75f12.y1 Gm-c1078 Glycine max cDNA clone GENOME SYSTEMS CLONEINHIBITOR. ;, mRNA sequence. 62 1e-05 1
AI437629|AI437629.1 sa37e09.y1 Gm-c1004 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1004-1505 5' similar to TR:O24653 O24653 GDI2. ;, mRNA sequence. 62 1e-05 1
BU964562|BU964562.1 sas99a12.y1 Gm-c1036 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1036-12311 5' similar to TR:O65744 O65744 GDP DISSOCIATION INHIBITOR. ;, mRNA sequence. 62 1e-05 1
BE800797|BE800797.1 sq98c12.y1 Gm-c1049 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1049-1199 5' similar to TR:O65744 O65744 GDP DISSOCIATION INHIBITOR. ;, mRNA sequence. 62 1e-05 1
AW397479|AW397479.1 sg79d05.y1 Gm-c1007 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1007-2626 5' similar to TR:O65744 O65744 GDP DISSOCIATION INHIBITOR. ;, mRNA sequence. 62 1e-05 1
BG790353|BG790353.1 sae68c10.y1 Gm-c1064 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1064-3212 5' similar to TR:O65744 O65744 GDP DISSOCIATION INHIBITOR. ;, mRNA sequence. 62 1e-05 1
BI972870|BI972870.1 sai84a09.y1 Gm-c1065 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1065-7338 5' similar to TR:O65744 O65744 GDP DISSOCIATION INHIBITOR. ;, mRNA sequence. 44 7e-04 3
CA819801|CA819801.1 sau76c08.y1 Gm-c1071 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1071-6664 5' similar to TR:O65744 O65744 GDP DISSOCIATION INHIBITOR. ;, mRNA sequence. 44 7e-04 2
BE059980|BE059980.1 sn39e03.y1 Gm-c1027 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1027-9653 5' similar to TR:O65744 O65744 GDP DISSOCIATION INHIBITOR. ;, mRNA sequence. 44 7e-04 2
BI426472|BI426472.1 sag03f09.y1 Gm-c1080 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1080-257 5' similar to TR:O65744 O65744 GDP DISSOCIATION INHIBITOR. ;, mRNA sequence. 44 7e-04 2
dna update 2004. 1. 4
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

EF676817_1(EF676817|pid:none) Picea sitchensis clone WS02753_I09... 169 8e-41
EF085049_1(EF085049|pid:none) Picea sitchensis clone WS0297_P09 ... 169 8e-41
AF251042_1(AF251042|pid:none) Mus musculus rab GDP dissociation ... 162 9e-39
BT071197_1(BT071197|pid:none) Picea sitchensis clone WS0279_A10 ... 162 1e-38
AJ401079_1(AJ401079|pid:none) Lycopersicon esculentum partial mR... 162 2e-38
AM710298_1(AM710298|pid:none) Lycopersicon esculentum GDI1 gene ... 162 2e-38
BC095329_1(BC095329|pid:none) Danio rerio GDP dissociation inhib... 161 2e-38
AY086920_1(AY086920|pid:none) Arabidopsis thaliana clone 29536 m... 161 3e-38
AF130987_1(AF130987|pid:none) Rattus norvegicus RAB GDP dissocia... 161 3e-38
(O97555) RecName: Full=Rab GDP dissociation inhibitor alpha; ... 161 3e-38
protein update 2009. 5.26
PSORT

psg: 1.01 gvh: 0.50 alm: 0.30 top: 0.67 tms: 0.07 mit: 0.29 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.02 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 1.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

48.0 %: nuclear
28.0 %: cytoplasmic
8.0 %: Golgi
8.0 %: mitochondrial
4.0 %: plasma membrane
4.0 %: vesicles of secretory system

>> prediction for SFJ116 is nuc

5' end seq. ID SFJ116F
5' end seq.
>SFJ116F.Seq
ATATTGTATTTTTAACACACCAAATATATATTTATATTTATATATTTATATATTTTTTTT
TATTTTATTTTCACACCCTATTCTATATAAATTAATTTTTTTTTTTTTTANCACCAAATT
AAAAAAAAAA----------
Length of 5' end seq. 130
3' end seq. ID SFJ116Z
3' end seq.
>SFJ116Z.Seq
----------TATATGCTTAATAAACCAATTGAAAATATTGTTTTCGATGAAGAAAAGAA
AATTATTAAAGTTACATCTGAAGGTGAAACTGTAACATGTGATAAAATTGTTTGTGATCC
ATCATATTTCCCAAATAAAGTTCAAAANAAAGGTAAAATTATTCGTTCAATTTGTATTTT
GAATGGTCCAATTCCATCTGCTGATAANAAATTTGAATCACTCCAAATCATTATCCCNCA
AAAACAAGTTAAACGTCAATCANATATGTACGTTGGTGTTATGTCATCCGCTCATTGTGT
CTGTCCAAAGGGTAAANACATTGCCATCGTTTCAGCCNCTGTTGAAACCAATGAACCANA
NAAANAATTAGCNCCAGCTTACGCTTTATTAGGTCCAATTCAANANAAATTTGTCTATAT
TTCTGATTTCATTGAACCAATTGCTGATGGNACTGCCGACAATGTTTTCATCTCAAAATC
ATATGATGCTACCTCTCNCTTTGAAACCNCNTGTGAAGATGTCATGGATATGNACAANAG
AATCNCTGGTAAAGATTTAGTTCNCNCTGTTCANCCAAATATTCTTAAACAACAAGAANA
AGCTGGNAACCAAGAACAAGAAGAACAATAAAAAAAAAAATAAAAAAATAAAAATAAAAA
AATAAAAATAAAAAAAATAAATAAAAAAATTAAATTATAATAA
Length of 3' end seq. 693
Connected seq. ID SFJ116P
Connected seq.
>SFJ116P.Seq
ATATTGTATTTTTAACACACCAAATATATATTTATATTTATATATTTATATATTTTTTTT
TATTTTATTTTCACACCCTATTCTATATAAATTAATTTTTTTTTTTTTTANCACCAAATT
AAAAAAAAAA----------TATATGCTTAATAAACCAATTGAAAATATTGTTTTCGATG
AAGAAAAGAAAATTATTAAAGTTACATCTGAAGGTGAAACTGTAACATGTGATAAAATTG
TTTGTGATCCATCATATTTCCCAAATAAAGTTCAAAANAAAGGTAAAATTATTCGTTCAA
TTTGTATTTTGAATGGTCCAATTCCATCTGCTGATAANAAATTTGAATCACTCCAAATCA
TTATCCCNCAAAAACAAGTTAAACGTCAATCANATATGTACGTTGGTGTTATGTCATCCG
CTCATTGTGTCTGTCCAAAGGGTAAANACATTGCCATCGTTTCAGCCNCTGTTGAAACCA
ATGAACCANANAAANAATTAGCNCCAGCTTACGCTTTATTAGGTCCAATTCAANANAAAT
TTGTCTATATTTCTGATTTCATTGAACCAATTGCTGATGGNACTGCCGACAATGTTTTCA
TCTCAAAATCATATGATGCTACCTCTCNCTTTGAAACCNCNTGTGAAGATGTCATGGATA
TGNACAANAGAATCNCTGGTAAAGATTTAGTTCNCNCTGTTCANCCAAATATTCTTAAAC
AACAAGAANAAGCTGGNAACCAAGAACAAGAAGAACAATAAAAAAAAAAATAAAAAAATA
AAAATAAAAAAATAAAAATAAAAAAAATAAATAAAAAAATTAAATTATAATAA
Length of connected seq. 823
Full length Seq ID -
Full length Seq. -
Length of full length seq. -