SFI884
Library SF
(Link to library)
Clone ID SFI884
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U10808-1
Original site URL
Representative seq. ID SFI884F
(Link to Original site)
Representative DNA sequence
>SFI884 (SFI884Q) /CSM/SF/SFI8-D/SFI884Q.Seq.d/
AATTTAATTGNTATCATAAAAATTTATTTTTATAAAATCTATAGTAACACTAATTTATAA
TAATCAAATTGTGGTCTTATTTTAATATTTTTTTTAATAAATTAAGATGATGAAGCCAGA
TTTAAATAGNCCATTACCACANTCACCACAACTTCAATCATTTGGAAGTAGATCATCAGA
TCTTGCAACCGAGGATTTATTTTTGAAGAAATTGGAAGCAATCTCACAAACTGCACCAAA
TGAAACAGTNAAGAATGAATTTTTAAACAAAGAAATACCATCTATCAACAAATTGTTTAC
CCGTTTCTTAAAGAATAGAAAGAAAGTAATCGATTGGGATAAAATCAATCCACCACCAGC
TGATATGGTTTTAAACTATAAAGATTTACCAGCAATCACTGAACAAAGAACTTCAGAACT
CGCTTCAAAATTGGCTGTTTTGAAATTAAATGGAGGTTTAGGTACAACAATGGGTTGTAC
TGGTCCAAAGAGTGTTATTGAAGTTAGAAGTGAAAAAACTTTCTTAGATTTAAGTGTTCA
ACAAATTAAAGAAATGAATGAAAGATATAATATTAAAGTACCATTAGTATTAATGAATTC
ATTTAATACTCAXXXXXXXXXX
sequence update 2001. 6. 1
Translated Amino Acid sequence
i*lxs*kfifiksivtliynnqivvlf*yff**IKMMKPDLNXPLPXSPQLQSFGSRSSD
LATEDLFLKKLEAISQTAPNETVKNEFLNKEIPSINKLFTRFLKNRKKVIDWDKINPPPA
DMVLNYKDLPAITEQRTSELASKLAVLKLNGGLGTTMGCTGPKSVIEVRSEKTFLDLSVQ
QIKEMNERYNIKVPLVLMNSFNT---


Translated Amino Acid sequence (All Frames)
Frame A:
nlixiikiyfykiysntnl**sncglilifflin*ddearfk*xittxtttsiiwk*iir
scnrgfifeeigsnltnctk*nsxe*ifkqrntiyqqivypflke*kesnrlg*nqstts
*ygfkl*rftsnh*tknfrtrfkigcfeikwrfrynnglywskecy*s*k*knflrfkcs
tn*rne*ki*y*stisinefi*y---


Frame B:
i*lxs*kfifiksivtliynnqivvlf*yff**IKMMKPDLNXPLPXSPQLQSFGSRSSD
LATEDLFLKKLEAISQTAPNETVKNEFLNKEIPSINKLFTRFLKNRKKVIDWDKINPPPA
DMVLNYKDLPAITEQRTSELASKLAVLKLNGGLGTTMGCTGPKSVIEVRSEKTFLDLSVQ
QIKEMNERYNIKVPLVLMNSFNT---


Frame C:
fnxyhknlfl*nl**h*fiiiklwsyfniffnklr**sqi*ixhyhxhhnfnhlevdhqi
lqpriyf*rnwkqshklhqmkqxrmnf*tkkyhlstnclpvs*rierk*sigiksihhql
iwf*tikiyqqslnkelqnslqnwlf*n*mev*vqqwvvlvqrvllklevkkls*i*vfn
klkk*mkdiilkyh*y**ihlil---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SFI884 (SFI884Q) /CSM/SF/SFI8-D/SFI884Q.Seq.d/ 1142 0.0
SFD859 (SFD859Q) /CSM/SF/SFD8-C/SFD859Q.Seq.d/ 1136 0.0
CFF321 (CFF321Q) /CSM/CF/CFF3-A/CFF321Q.Seq.d/ 1136 0.0
SFI784 (SFI784Q) /CSM/SF/SFI7-D/SFI784Q.Seq.d/ 1134 0.0
CHA506 (CHA506Q) /CSM/CH/CHA5-A/CHA506Q.Seq.d/ 1134 0.0
AFO104 (AFO104Q) /CSM/AF/AFO1-A/AFO104Q.Seq.d/ 1134 0.0
SFK207 (SFK207Q) /CSM/SF/SFK2-A/SFK207Q.Seq.d/ 1126 0.0
CFK146 (CFK146Q) /CSM/CF/CFK1-B/CFK146Q.Seq.d/ 1126 0.0
CFD680 (CFD680Q) /CSM/CF/CFD6-D/CFD680Q.Seq.d/ 1126 0.0
CFA695 (CFA695Q) /CSM/CF/CFA6-D/CFA695Q.Seq.d/ 1126 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AF150929|AF150929.1 Dictyostelium discoideum UDP-glucose pyrophosphorylase 2 (UDPGP2) mRNA, complete cds. 1007 0.0 2
BQ060478|BQ060478.1 Bvstrg3ARGF7 Sugar Beet germination cDNA library Beta vulgaris cDNA 5' similar to UDP-glucose pyrophosphorylase, mRNA sequence. 70 8e-09 2
AP006628|AP006628.1 Onion yellows phytoplasma DNA, complete genome. 34 5e-07 19
BQ489736|BQ489736.1 69-E9234-006-008-J18-T3 Sugar beet MPIZ-ADIS-006 Lambda Zap II library Beta vulgaris cDNA clone J-18-8, mRNA sequence. 62 1e-06 2
BQ490192|BQ490192.1 49-E9435-006-010-A14-T3 Sugar beet MPIZ-ADIS-006 Lambda Zap II library Beta vulgaris cDNA clone A-14-10, mRNA sequence. 62 1e-06 2
BQ489864|BQ489864.1 39-E9426-006-009-M10-T3 Sugar beet MPIZ-ADIS-006 Lambda Zap II library Beta vulgaris cDNA clone M-10-9, mRNA sequence. 62 2e-06 2
BI096068|BI096068.1 PIP2ER_C07 Sugar Beet germination cDNA library Beta vulgaris cDNA 5' similar to UTP-glucose-1-phosphate uridyltransferase, mRNA sequence. 62 2e-06 2
BQ087635|BQ087635.1 Cri_9_L03_SP6 Ceratopteris Spore Library Ceratopteris richardii cDNA clone Cri_9_L03 5', mRNA sequence. 60 4e-05 1
AX489345|AX489345.1 Sequence 6645 from Patent WO02053728. 52 5e-05 2
AL844509|AL844509.1 Plasmodium falciparum chromosome 13. 34 8e-05 23
dna update 2004. 1. 4
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54YZ0) RecName: Full=UTP--glucose-1-phosphate uridylyltransfer... 306 2e-82
AE017343_372(AE017343|pid:none) Cryptococcus neoformans var. neo... 134 2e-30
CR382127_82(CR382127|pid:none) Yarrowia lipolytica strain CLIB12... 134 2e-30
AY850189_1(AY850189|pid:none) Emericella nidulans UDP-glucose py... 132 6e-30
(Q07130) RecName: Full=UTP--glucose-1-phosphate uridylyltransfer... 130 3e-29
BC060013_1(BC060013|pid:none) Xenopus laevis hypothetical protei... 129 5e-29
BC026626_1(BC026626|pid:none) Mus musculus UDP-glucose pyrophosp... 129 9e-29
AC114748_1(AC114748|pid:none) Homo sapiens BAC clone RP11-164A18... 129 9e-29
(Q91ZJ5) RecName: Full=UTP--glucose-1-phosphate uridylyltransfer... 129 9e-29
S62599(S62599)UTP-glucose-1-phosphate uridylyltransferase (EC 2.... 129 9e-29
protein update 2009. 5.26
PSORT

psg: 0.77 gvh: 0.50 alm: 0.47 top: 0.53 tms: 0.00 mit: 0.29 mip: 0.05
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

32.0 %: cytoplasmic
32.0 %: nuclear
20.0 %: mitochondrial
12.0 %: cytoskeletal
4.0 %: endoplasmic reticulum

>> prediction for SFI884 is cyt

5' end seq. ID SFI884F
5' end seq.
>SFI884F.Seq
AATTTAATTGNTATCATAAAAATTTATTTTTATAAAATCTATAGTAACACTAATTTATAA
TAATCAAATTGTGGTCTTATTTTAATATTTTTTTTAATAAATTAAGATGATGAAGCCAGA
TTTAAATAGNCCATTACCACANTCACCACAACTTCAATCATTTGGAAGTAGATCATCAGA
TCTTGCAACCGAGGATTTATTTTTGAAGAAATTGGAAGCAATCTCACAAACTGCACCAAA
TGAAACAGTNAAGAATGAATTTTTAAACAAAGAAATACCATCTATCAACAAATTGTTTAC
CCGTTTCTTAAAGAATAGAAAGAAAGTAATCGATTGGGATAAAATCAATCCACCACCAGC
TGATATGGTTTTAAACTATAAAGATTTACCAGCAATCACTGAACAAAGAACTTCAGAACT
CGCTTCAAAATTGGCTGTTTTGAAATTAAATGGAGGTTTAGGTACAACAATGGGTTGTAC
TGGTCCAAAGAGTGTTATTGAAGTTAGAAGTGAAAAAACTTTCTTAGATTTAAGTGTTCA
ACAAATTAAAGAAATGAATGAAAGATATAATATTAAAGTACCATTAGTATTAATGAATTC
ATTTAATACTCA----------
Length of 5' end seq. 612
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -