>SFI878 (SFI878Q) /CSM/SF/SFI8-D/SFI878Q.Seq.d/
XXXXXXXXXXCCTCTGCAACTACTGCAGGTACAACANCTGGTGGAACTTCAACTGGTGGT
TCAACTTCTGATAGTAGTGCTGCTTCCTCAGCCGATAGTAGCGCTGCCTCCTCATCACCA
NCAAGCAGTGCTGCTTCAAGTGCCGCTTCAAGNGAACCATCAAGTAGCGCCGCTTCAAGT
AGTGCTCCA

---SATTAGTTXGGTSTGGSTSDSSAASSADSSAASSSPXSSAASSAASXEPSSSAASSS
AP

Frame A:
---lcnycrynxwwnfnwwfnf***ccflsr**rcllitxkqccfkcrfkxtik*rrfk*
cs


Frame B:
---SATTAGTTXGGTSTGGSTSDSSAASSADSSAASSSPXSSAASSAASXEPSSSAASSS
AP


Frame C:
---lqllqvqxlvelqlvvqllivvllpqpivalpphhxqavllqvplqxnhqvaplqvv
l

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFI878 (SFI878Q) /CSM/SF/SFI8-D/SFI878Q.Seq.d/                        337   3e-92
VFN316 (VFN316Q) /CSM/VF/VFN3-A/VFN316Q.Seq.d/                        329   8e-90
VFM702 (VFM702Q) /CSM/VF/VFM7-A/VFM702Q.Seq.d/                        329   8e-90
VFB558 (VFB558Q) /CSM/VF/VFB5-C/VFB558Q.Seq.d/                        329   8e-90
VFA856 (VFA856Q) /CSM/VF/VFA8-C/VFA856Q.Seq.d/                        329   8e-90
VFA779 (VFA779Q) /CSM/VF/VFA7-D/VFA779Q.Seq.d/                        329   8e-90
SSM203 (SSM203Q) /CSM/SS/SSM2-A/SSM203Q.Seq.d/                        329   8e-90
SSI632 (SSI632Q) /CSM/SS/SSI6-B/SSI632Q.Seq.d/                        329   8e-90
SSG603 (SSG603Q) /CSM/SS/SSG6-A/SSG603Q.Seq.d/                        329   8e-90
SSG344 (SSG344Q) /CSM/SS/SSG3-B/SSG344Q.Seq.d/                        329   8e-90

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

D13973|D13973.1 Dictyostelium discoideum DNA for Dp87 protein, complete cds.   329   8e-87  1
CD658158|CD658158.1 EtESTef18b08.y1 Eimeria tenella M5-6 Excised cDNA Eimeria tenella cDNA 5' similar to TR:O89068 O89068 RIBOSOMAL PROTEIN S3 ;, mRNA sequence.    32   1.7    2
CL250317|CL250317.1 ZMMBBb0599E17f ZMMBBb (HindIII) Zea mays subsp. mays genomic clone ZMMBBb0599E17 5', genomic survey sequence.    42   2.6    1
U21211|U21211.1 Chironomus dorsalis histone H1-I gene, complete cds.    42   2.6    1
CF644841|CF644841.1 K26_B01 Filamentous Forced Diploid Ustilago maydis cDNA 3', mRNA sequence.    34   3.3    2
AL935261|AL935261.1 Lactobacillus plantarum strain WCFS1 complete genome; segment 10/11.    32   4.4    2
CF641582|CF641582.1 D41_E10 Filamentous Forced Diploid Ustilago maydis cDNA 3', mRNA sequence.    34   4.5    2
CF643189|CF643189.1 D60_G10 Filamentous Forced Diploid Ustilago maydis cDNA 3', mRNA sequence.    34   4.5    2
CF643884|CF643884.1 K13_G06 Filamentous Forced Diploid Ustilago maydis cDNA 3', mRNA sequence.    34   4.7    2
BH653539|BH653539.1 BOMPP40TF BO_2_3_KB Brassica oleracea genomic clone BOMPP40, DNA sequence.    38   5.6    2

 ***** No hits found ******

Lambda     K      H
   0.306    0.168    0.676

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3101297
Number of Hits to DB: 78,807,934

 psg: 0.85  gvh: 0.51  alm: 0.59  top: 0.33  tms: 0.00  mit: 0.26  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: nuclear
	 32.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  8.0 %: endoplasmic reticulum
	  4.0 %: vacuolar
	  4.0 %: mitochondrial
	  4.0 %: extracellular, including cell wall
	  4.0 %: vesicles of secretory system

>> prediction for SFI878 is nuc

>SFI878Z.Seq
NNNNNNNNNNCCTCTGCAACTACTGCAGGTACAACANCTGGTGGAACTTCAACTGGTGGT
TCAACTTCTGATAGTAGTGCTGCTTCCTCAGCCGATAGTAGCGCTGCCTCCTCATCACCA
NCAAGCAGTGCTGCTTCAAGTGCCGCTTCAAGNGAACCATCAAGTAGCGCCGCTTCAAGT
AGTGCTCCA