AFI489
Library AF
(Link to library)
Clone ID AFI489
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16560-1
Original site URL
Representative seq. ID AFI489P
(Link to Original site)
Representative DNA sequence
>AFI489 (AFI489Q) /CSM/AF/AFI4-D/AFI489Q.Seq.d/
CTGTTGGCCTACTGGTAANTTCATTTTTATTATACAAATATTAAATTCATATTTTATTTT
TTTATATATTGTAACATTTCATAAAAAAAAAAAAAAAAAAAANTTAAAAAANCACCTTNT
TNGAAAAAAAAAAXXXXXXXXXXGTANNNNTNNTNNNNTNNNNNNTTNANGNTNNTNNNN
NCTTTNNNNATGTNNNNNNNANNTTTNNANNTAANNNANGNTTTTCCNNCNNANNANNNN
NGTNTNNTTTTNNNTGGTANNCNNTTANAANATGNTNGGNCTNTNTNTGATTNCANTNTC
CAAAAAGNATCNNCTNTCCNNTTGGTCNTCAGATTAAGAGGTGGTATGCAANTNTTTGTC
NAANCATTANCTGGTAAGNCCATCACTCTTGAAGTTGAGGGCTCAGATAATATTGANAAT
GTTANANCAAAGATTCAAGNCAAAGAAGGTATCCCNCCAGACCAACAAAGATTAATTTTC
GCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGATTACAACATTCAAAAGGAATCC
NCTCTCCATTTAGTCCTCAGATTAAGAGGTGGTATGCAAATTTTTGTCAAAACCCTCACT
GGTAAGACTATTACACTCGAAGTTGAAGGTTCTGATAACATTGAGAATGTTAAAGCCAAA
ATCCAAGACAAAGAAGGTATTCCACCAGATCAACAACGTCTCATTTTCGCCGGTAAACAA
TTGGAGGATGGTCGTACTCTCTCTGATTACAACATTCAAAAGGAATCCACTCTCCATTTA
GTTCTCAGATTAAGAGGTGGTATGCAAATTTTTGTAAAAACTCTCACTGGTAAAACCATT
ACACTCGAANNTGAAGGTAGTGACAACATTGAGAATGTANAAACAAAAATTCAAGACAAA
GAAGGTATTCC
sequence update 2001. 6. 2
Translated Amino Acid sequence
CWPTGXFIFIIQILNSYFIFLYIVTFHKKKKKKXLKXHLXXKKK---

---XXXXXXXXXXXXXXXMXXXXXXXXXXFPXXXXXXXXXGXXLXXXXXXXDXXXQKXSX
XXLVXRLRGGMQXFVXXLXGKXITLEVEGSDNIXNVXXKIQXKEGIPPDQQRLIFAGKQL
EDGRTLSDYNIQKESXLHLVLRLRGGMQIFVKTLTGKTITLEVEGSDNIENVKAKIQDKE
GIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEXE
GSDNIENVXTKIQDKEGI


Translated Amino Acid sequence (All Frames)
Frame A:
llayw*xhfyytnikfifyffiycnis*kkkkkkxkkxpxxkkk---

---vxxxxxxxxxxxxfxxvxxxfxxxxxfsxxxxxxxfxwxxxxxxxxxx*xxxpkxix
xpxgxqikrwyaxxcxxixw*xhhs*s*glr*y*xcxxkdsxqrrypxrptkinfrw*ti
rrwsysl*lqhskgixspfspqikrwyanfcqnphw*dyytrs*rf**h*ec*sqnprqr
rystrsttshfrr*tiggwsysl*lqhskgihspfssqikrwyanfcknshw*nhytrx*
r**qh*ecxnknsrqrrys

Frame B:
CWPTGXFIFIIQILNSYFIFLYIVTFHKKKKKKXLKXHLXXKKK---

---XXXXXXXXXXXXXXXMXXXXXXXXXXFPXXXXXXXXXGXXLXXXXXXXDXXXQKXSX
XXLVXRLRGGMQXFVXXLXGKXITLEVEGSDNIXNVXXKIQXKEGIPPDQQRLIFAGKQL
EDGRTLSDYNIQKESXLHLVLRLRGGMQIFVKTLTGKTITLEVEGSDNIENVKAKIQDKE
GIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEXE
GSDNIENVXTKIQDKEGI

Frame C:
vgllvxsfllyky*ihilffyil*hfikkkkkkx*kxtxxekk---

---xxxxxxxxxxxxlxxcxxxxxx*xxxfxxxxxvxfxxvxxxxmxglxxixxskkxxl
sxwssd*evvcxxlsxhxlvxpsllklraqiilxmlxqrfkxkkvsxqtnkd*fslvnn*
kmvvlslittfkrnplsi*ssd*evvckflskpslvrllhsklkvlitlrmlkpksktkk
vfhqinnvsfspvnnwrmvvlslittfkrnplsi*fsd*evvckfl*klslvkplhsxxk
vvttlrmxkqkfktkkvf

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SFK754 (SFK754Q) /CSM/SF/SFK7-C/SFK754Q.Seq.d/ 1088 0.0
SFG820 (SFG820Q) /CSM/SF/SFG8-A/SFG820Q.Seq.d/ 1088 0.0
SFG572 (SFG572Q) /CSM/SF/SFG5-C/SFG572Q.Seq.d/ 1088 0.0
SFD545 (SFD545Q) /CSM/SF/SFD5-B/SFD545Q.Seq.d/ 1088 0.0
CFK311 (CFK311Q) /CSM/CF/CFK3-A/CFK311Q.Seq.d/ 1088 0.0
CFJ754 (CFJ754Q) /CSM/CF/CFJ7-C/CFJ754Q.Seq.d/ 1088 0.0
CFJ631 (CFJ631Q) /CSM/CF/CFJ6-B/CFJ631Q.Seq.d/ 1088 0.0
CFI756 (CFI756Q) /CSM/CF/CFI7-C/CFI756Q.Seq.d/ 1088 0.0
CFI358 (CFI358Q) /CSM/CF/CFI3-C/CFI358Q.Seq.d/ 1088 0.0
CFG340 (CFG340Q) /CSM/CF/CFG3-B/CFG340Q.Seq.d/ 1088 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

M19491|M19491.1 Slime mold (D.discoideum) ubiquitin p229C/pLK229 gene, complete cds. 1074 0.0 3
M23748|M23748.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB19. 1059 0.0 3
M19666|M19666.1 Slime mold (D.discoideum) ubiquitin gene, 3' end, clone p229C. 1059 0.0 3
M23753|M23753.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB14. 577 e-170 3
M23754|M23754.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB2. 605 e-169 4
M19492|M19492.1 Slime mold (D.discoideum) ubiquitin lambda-229 gene, complete cds. 589 e-164 3
M23752|M23752.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB17. 436 e-130 4
M23751|M23751.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB18. 436 e-130 4
CF181989|CF181989.1 ISO4G3F Iso cDNA Isotricha sp. BBF-2003 cDNA similar to ubiquitin, mRNA sequence. 145 6e-76 4
CF181994|CF181994.1 ISO4G8F Iso cDNA Isotricha sp. BBF-2003 cDNA similar to ubiquitin, mRNA sequence. 145 6e-76 4
dna update 2004. 9.22
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

A27806(A27806) polyubiquitin 5 (clone pLK229) - slime mold (Dict... 357 3e-97
M19666_1(M19666|pid:none) Slime mold (D.discoideum) ubiquitin ge... 357 3e-97
B34080(B34080)polyubiquitin 5 (clone DCUB19) - slime mold (Dicty... 357 3e-97
M23754_1(M23754|pid:none) D.discoideum ubiquitin mRNA, complete ... 355 1e-96
AY957885_1(AY957885|pid:none) Gracilaria lemaneiformis polyubiqu... 342 1e-92
AB021974_1(AB021974|pid:none) Bombyx mori UBI3 mRNA for polyubiq... 341 2e-92
Y12081_1(Y12081|pid:none) Suberites domuncula mRNA for polyubiqu... 341 2e-92
S32020(S32020) polyubiquitin 6 - Geodia cydonium &X70917_1(X709... 341 2e-92
T16144(T16144) ubiquitin - Caenorhabditis elegans &U23172_1(U23... 341 2e-92
S53719(S53719;S73107;S71069)polyubiquitin 6 - red alga (Gracilar... 339 6e-92
protein update 2009. 4.23
PSORT

psg: 0.96 gvh: 0.45 alm: 0.26 top: 1.00 tms: 0.07 mit: 0.23 mip: 0.18
nuc: 0.34 erl: 0.00 erm: 0.60 pox: 0.00 px2: 1.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 1.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

36.0 %: nuclear
24.0 %: cytoplasmic
16.0 %: endoplasmic reticulum
12.0 %: mitochondrial
4.0 %: plasma membrane
4.0 %: vesicles of secretory system
4.0 %: peroxisomal

>> prediction for AFI489 is nuc

5' end seq. ID AFI489F
5' end seq.
>AFI489F.Seq
CTGTTGGCCTACTGGTAANTTCATTTTTATTATACAAATATTAAATTCATATTTTATTTT
TTTATATATTGTAACATTTCATAAAAAAAAAAAAAAAAAAAANTTAAAAAANCACCTTNT
TNGAAAAAAAAAA----------
Length of 5' end seq. 133
3' end seq. ID AFI489Z
3' end seq.
>AFI489Z.Seq
----------GTANNNNTNNTNNNNTNNNNNNTTNANGNTNNTNNNNNCTTTNNNNATGT
NNNNNNNANNTTTNNANNTAANNNANGNTTTTCCNNCNNANNANNNNNGTNTNNTTTTNN
NTGGTANNCNNTTANAANATGNTNGGNCTNTNTNTGATTNCANTNTCCAAAAAGNATCNN
CTNTCCNNTTGGTCNTCAGATTAAGAGGTGGTATGCAANTNTTTGTCNAANCATTANCTG
GTAAGNCCATCACTCTTGAAGTTGAGGGCTCAGATAATATTGANAATGTTANANCAAAGA
TTCAAGNCAAAGAAGGTATCCCNCCAGACCAACAAAGATTAATTTTCGCTGGTAAACAAT
TAGAAGATGGTCGTACTCTCTCTGATTACAACATTCAAAAGGAATCCNCTCTCCATTTAG
TCCTCAGATTAAGAGGTGGTATGCAAATTTTTGTCAAAACCCTCACTGGTAAGACTATTA
CACTCGAAGTTGAAGGTTCTGATAACATTGAGAATGTTAAAGCCAAAATCCAAGACAAAG
AAGGTATTCCACCAGATCAACAACGTCTCATTTTCGCCGGTAAACAATTGGAGGATGGTC
GTACTCTCTCTGATTACAACATTCAAAAGGAATCCACTCTCCATTTAGTTCTCAGATTAA
GAGGTGGTATGCAAATTTTTGTAAAAACTCTCACTGGTAAAACCATTACACTCGAANNTG
AAGGTAGTGACAACATTGAGAATGTANAAACAAAAATTCAAGACAAAGAAGGTATTCC
Length of 3' end seq. 768
Connected seq. ID AFI489P
Connected seq.
>AFI489P.Seq
CTGTTGGCCTACTGGTAANTTCATTTTTATTATACAAATATTAAATTCATATTTTATTTT
TTTATATATTGTAACATTTCATAAAAAAAAAAAAAAAAAAAANTTAAAAAANCACCTTNT
TNGAAAAAAAAAA----------GTANNNNTNNTNNNNTNNNNNNTTNANGNTNNTNNNN
NCTTTNNNNATGTNNNNNNNANNTTTNNANNTAANNNANGNTTTTCCNNCNNANNANNNN
NGTNTNNTTTTNNNTGGTANNCNNTTANAANATGNTNGGNCTNTNTNTGATTNCANTNTC
CAAAAAGNATCNNCTNTCCNNTTGGTCNTCAGATTAAGAGGTGGTATGCAANTNTTTGTC
NAANCATTANCTGGTAAGNCCATCACTCTTGAAGTTGAGGGCTCAGATAATATTGANAAT
GTTANANCAAAGATTCAAGNCAAAGAAGGTATCCCNCCAGACCAACAAAGATTAATTTTC
GCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGATTACAACATTCAAAAGGAATCC
NCTCTCCATTTAGTCCTCAGATTAAGAGGTGGTATGCAAATTTTTGTCAAAACCCTCACT
GGTAAGACTATTACACTCGAAGTTGAAGGTTCTGATAACATTGAGAATGTTAAAGCCAAA
ATCCAAGACAAAGAAGGTATTCCACCAGATCAACAACGTCTCATTTTCGCCGGTAAACAA
TTGGAGGATGGTCGTACTCTCTCTGATTACAACATTCAAAAGGAATCCACTCTCCATTTA
GTTCTCAGATTAAGAGGTGGTATGCAAATTTTTGTAAAAACTCTCACTGGTAAAACCATT
ACACTCGAANNTGAAGGTAGTGACAACATTGAGAATGTANAAACAAAAATTCAAGACAAA
GAAGGTATTCC
Length of connected seq. 901
Full length Seq ID -
Full length Seq. -
Length of full length seq. -