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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFI738
Library SF
(Link to library)
Clone ID SFI738
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16243-1
Original site URL
Representative seq. ID SFI738P
(Link to Original site)
Representative DNA sequence 
>SFI738 (SFI738Q) /CSM/SF/SFI7-B/SFI738Q.Seq.d/
ATATATAATATTACACCCCATAACTAATAAAATGTCATTCAATTCAAGAATTGAAACTAT
TTCTCGTCACTTAAGCACTGGACCAATTTTAGAATCAAATCCAACTTCTGGATCAGTTAA
ATCAGGAGATGATATTGTAATTGTTGCACCATTTCGTACAGCAATTTGTAAAGCTAAAAG
AGGAGCATTCAAAGAGACAGCACCAGATGATTTATTAGCACCAGTTATTAAACATATTAT
CAAAGTTACCAAATTAGATCCAAAATTAATTGGAGATGTTGTTATGGGAGCAGTATTACC
AAGATCATCACAAGGTGCAACCCGAAGTTAGAGTTGCCACATTATTAGCAGGTTTACCAA
AGGAAGTACCATGTTATACAGTCAACAGACGATGTTCATCAGGTTTACAAGCAATTGCCA
ATTGTGCAGCAGCAGTCAAAGCAGGTTTCTATGACATTGGTTTAGCAGGCGGTGTAGAAT
CAATGAGTTTAAATCCAATGGCATGGGATGGGTGGTTTCAACGAGGTTGCCCAAGAGGAT
CCAATCATTAGXXXXXXXXXXCGCAGAGCGTTTTGGTGTCACCAGAAAAGACCAAGATGA
ATTCTCTGTAAATTCACACAAGAAGGCAGGTGCCGCCCAAAAAGCAGGTAAATTTGACGA
TGAAATCGTTCCAGTCACCGTAAAGACCGAGGATGGCAAAACCATCGTCGTCGATAAAGA
CGAAGGTATCCGTGAGAAAACCACCGTTGCAGATTTGGCCAAATTAAAACCAGCTTTCAA
AGAGGGTGGTACAACCACCGCTGGTAACTCTAGTCAAATGAGTGATGGTGCCGCCGCTTG
TTTAGTTATGAAAAGAAGTACCGCCGAAAGATTGGGTCTCAAGGTTGAATTGGTTTTCGT
AGCTTTTGCTGCTGTCGGTGTCGAACCATCCATTATGGGTATTGGTCCAGCCGTTGCAAT
TCCAGCCGCCTTAAAACAAGCTGGTCTCACCACTAAAGATATCGACGTTTTTGAAATCAA
TGAAGCTTTTGCTTCTCAAGCATTTTACAGTTGTAAGGTTTTGGGTTTGGATATGAACAA
AGTTAATCCAAATGGCTCTGGTATCGCTTTAGGTCATCCATTAGGTGCTACTGGTGCCCG
TCAAATGGCTACCATTTCAAGAGAATTACATCGTCGTAAAGGTAAATATGGTGTAATCTC
TATGTGTAT
sequence update 2001.11.22
Translated Amino Acid sequence 
yiilhpitnkmsfnsrietisrhlstgpilesnptsgsvksgddivivapfrtaickakr
gafketapddllapvikhiikvtkldpkligdvvmgavlprssqgatrs*schiisrftk
gstmlysqqtmfirftsncqlcsssqsrfl*HWFSRRCRINEFKSNGMGWVVSTRLPKRI
QSL---

---AERFGVTRKDQDEFSVNSHKKAGAAQKAGKFDDEIVPVTVKTEDGKTIVVDKDEGIR
EKTTVADLAKLKPAFKEGGTTTAGNSSQMSDGAAACLVMKRSTAERLGLKVELVFVAFAA
VGVEPSIMGIGPAVAIPAALKQAGLTTKDIDVFEINEAFASQAFYSCKVLGLDMNKVNPN
GSGIALGHPLGATGARQMATISRELHRRKGKYGVISMC
Translated Amino Acid sequence (All Frames) 
Frame A:
iynitphn**nviqfkn*nyfsslkhwtnfriksnfwis*irr*ycncctisysnl*s*k
rsiqrdstr*fistsy*tyyqsyqirskinwrccygssitkiitrcnpklelphy*qvyq
rkyhviqstddvhqvykqlpivqqqskqvsmtlv*qav*nq*v*iqwhgmggfnevaqed
pii---

---rrafwchqkrpr*ilckftqegrcrpksr*i*r*nrsshrkdrgwqnhrrr*rrryp
*enhrcrfgqiktsfqrgwynhrw*l*sne*wcrrlfsyekkyrrkigsqg*igfrsfcc
crcrtihygywssrcnssrlktswshh*ryrrf*nq*sfcfssilql*gfgfgyeqs*sk
wlwyrfrssircywcpsngyhfkritss*r*iwcnlyvy

Frame B:
yiilhpitnkmsfnsrietisrhlstgpilesnptsgsvksgddivivapfrtaickakr
gafketapddllapvikhiikvtkldpkligdvvmgavlprssqgatrs*schiisrftk
gstmlysqqtmfirftsncqlcsssqsrfl*HWFSRRCRINEFKSNGMGWVVSTRLPKRI
QSL---

---AERFGVTRKDQDEFSVNSHKKAGAAQKAGKFDDEIVPVTVKTEDGKTIVVDKDEGIR
EKTTVADLAKLKPAFKEGGTTTAGNSSQMSDGAAACLVMKRSTAERLGLKVELVFVAFAA
VGVEPSIMGIGPAVAIPAALKQAGLTTKDIDVFEINEAFASQAFYSCKVLGLDMNKVNPN
GSGIALGHPLGATGARQMATISRELHRRKGKYGVISMC

Frame C:
i*yytp*likchsiqelklflvt*aldqf*nqiqlldqlnqemil*llhhfvqqfvklke
ehskrqhqmiy*hqllnilsklpn*iqn*lemllweqyyqdhhkvqpevrvatllaglpk
evpcytvnrrcssglqaiancaaavkagfydiglaggvesmslnpmawdgwfqrgcprgs
nh*---

---qsvlvspektkmnsl*ihtrrqvppkkqvnltmksfqsp*rprmakpsssiktkvsv
rkpplqiwpn*nqlskrvvqpplvtlvk*vmvpplv*l*kevppkdwvsrlnwfs*llll
svsnhplwvlvqplqfqpp*nklvsplkistflksmkllllkhftvvrfwvwi*tkliqm
alvsl*vih*vllvpvkwlpfqenyivvkvnmv*slcv
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFI738 (SFI738Q) /CSM/SF/SFI7-B/SFI738Q.Seq.d/                       2337   0.0
VFE239 (VFE239Q) /CSM/VF/VFE2-B/VFE239Q.Seq.d/                       1285   0.0
SLG762 (SLG762Q) /CSM/SL/SLG7-C/SLG762Q.Seq.d/                       1285   0.0
SFI740 (SFI740Q) /CSM/SF/SFI7-B/SFI740Q.Seq.d/                       1285   0.0
SFH501 (SFH501Q) /CSM/SF/SFH5-A/SFH501Q.Seq.d/                       1285   0.0
SFG758 (SFG758Q) /CSM/SF/SFG7-C/SFG758Q.Seq.d/                       1285   0.0
SFG482 (SFG482Q) /CSM/SF/SFG4-D/SFG482Q.Seq.d/                       1285   0.0
SFD567 (SFD567Q) /CSM/SF/SFD5-C/SFD567Q.Seq.d/                       1285   0.0
SFD243 (SFD243Q) /CSM/SF/SFD2-B/SFD243Q.Seq.d/                       1285   0.0
SFB522 (SFB522Q) /CSM/SF/SFB5-A/SFB522Q.Seq.d/                       1285   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strainAX4, complete sequence.  1285   0.0    4
CA917334|CA917334.1 EST641481 GPOD Medicago truncatula cDNA clone GPOD-35H18, mRNA sequence.    40   4e-12  5
CA858588|CA858588.1 EST635843 GLSD Medicago truncatula cDNA clone pGLSD-38M16, mRNA sequence.    40   6e-12  5
AU089542|AU089542.1 Lotus japonicus flower bud cDNA clone: Ljfb-v09.    44   3e-10  4
CB008288|CB008288.1 VVC055H06_148036 An expressed sequence tag database for abiotic stressed berries of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVC055H06 5, mRNA sequence.    60   5e-10  3
CB005315|CB005315.1 VVC011E10_126660 An expressed sequence tag database for abiotic stressed berries of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVC011E10 5, mRNA sequence.    60   5e-10  3
BM065622|BM065622.1 KS07005E12 KS07 Capsicum annuum cDNA, mRNA sequence.    68   2e-08  2
CA515447|CA515447.1 KS09042A06 KS09 Capsicum annuum cDNA, mRNA sequence.    68   3e-08  2
BM066045|BM066045.1 KS07010C02 KS07 Capsicum annuum cDNA, mRNA sequence.    68   3e-08  2
CF609274|CF609274.1 INFIO01_000052 Grape Inflorescence pSPORT1 Library Vitis vinifera cDNA 5', mRNA sequence.    56   5e-08  3
dna update 2004. 1. 4
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116986_75(AC116986|pid:none) Dictyostelium discoideum chromoso...   561   e-158
AB333797_1(AB333797|pid:none) Glycine max mRNA for peroxisomal 3...   304   3e-81
AY383736_1(AY383736|pid:none) Glycine max 3-ketoacyl-CoA thiolas...   303   8e-81
X75329_1(X75329|pid:none) M.indica (Manila) THMF5 mRNA for 3-ket...   303   8e-81
S57792(S57792)acetyl-CoA C-acyltransferase (EC 2.3.1.16) B precu...   301   3e-80
AM474896_9(AM474896|pid:none) Vitis vinifera contig VV79X001698....   301   4e-80
(Q56WD9) RecName: Full=3-ketoacyl-CoA thiolase 2, peroxisomal;  ...   299   1e-79
AK222103_1(AK222103|pid:none) Arabidopsis thaliana mRNA for 3-ke...   237   3e-79
AF062589_2(AF062589|pid:none) Arabidopsis thaliana 3-keto-acyl-C...   298   3e-79
T07989(T07989) acetyl-CoA C-acyltransferase (EC 2.3.1.16) precur...   297   4e-79
protein update 2009. 5.26
PSORT 

 psg: 0.73  gvh: 0.37  alm: 0.28  top: 0.33  tms: 0.07  mit: 0.45  mip: 0.06
 nuc: 0.02  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 40.0 %: mitochondrial
	 20.0 %: nuclear
	 16.0 %: Golgi
	 12.0 %: endoplasmic reticulum
	  8.0 %: cytoplasmic
	  4.0 %: vacuolar

>> prediction for SFI738 is mit
5' end seq. ID SFI738F
5' end seq. 
>SFI738F.Seq
ATATATAATATTACACCCCATAACTAATAAAATGTCATTCAATTCAAGAATTGAAACTAT
TTCTCGTCACTTAAGCACTGGACCAATTTTAGAATCAAATCCAACTTCTGGATCAGTTAA
ATCAGGAGATGATATTGTAATTGTTGCACCATTTCGTACAGCAATTTGTAAAGCTAAAAG
AGGAGCATTCAAAGAGACAGCACCAGATGATTTATTAGCACCAGTTATTAAACATATTAT
CAAAGTTACCAAATTAGATCCAAAATTAATTGGAGATGTTGTTATGGGAGCAGTATTACC
AAGATCATCACAAGGTGCAACCCGAAGTTAGAGTTGCCACATTATTAGCAGGTTTACCAA
AGGAAGTACCATGTTATACAGTCAACAGACGATGTTCATCAGGTTTACAAGCAATTGCCA
ATTGTGCAGCAGCAGTCAAAGCAGGTTTCTATGACATTGGTTTAGCAGGCGGTGTAGAAT
CAATGAGTTTAAATCCAATGGCATGGGATGGGTGGTTTCAACGAGGTTGCCCAAGAGGAT
CCAATCATTAG----------
Length of 5' end seq. 551
3' end seq. ID SFI738Z
3' end seq. 
>SFI738Z.Seq
NNNNNNNNNNCGCAGAGCGTTTTGGTGTCACCAGAAAAGACCAAGATGAATTCTCTGTAA
ATTCACACAAGAAGGCAGGTGCCGCCCAAAAAGCAGGTAAATTTGACGATGAAATCGTTC
CAGTCACCGTAAAGACCGAGGATGGCAAAACCATCGTCGTCGATAAAGACGAAGGTATCC
GTGAGAAAACCACCGTTGCAGATTTGGCCAAATTAAAACCAGCTTTCAAAGAGGGTGGTA
CAACCACCGCTGGTAACTCTAGTCAAATGAGTGATGGTGCCGCCGCTTGTTTAGTTATGA
AAAGAAGTACCGCCGAAAGATTGGGTCTCAAGGTTGAATTGGTTTTCGTAGCTTTTGCTG
CTGTCGGTGTCGAACCATCCATTATGGGTATTGGTCCAGCCGTTGCAATTCCAGCCGCCT
TAAAACAAGCTGGTCTCACCACTAAAGATATCGACGTTTTTGAAATCAATGAAGCTTTTG
CTTCTCAAGCATTTTACAGTTGTAAGGTTTTGGGTTTGGATATGAACAAAGTTAATCCAA
ATGGCTCTGGTATCGCTTTAGGTCATCCATTAGGTGCTACTGGTGCCCGTCAAATGGCTA
CCATTTCAAGAGAATTACATCGTCGTAAAGGTAAATATGGTGTAATCTCTATGTGTAT
Length of 3' end seq. 658
Connected seq. ID SFI738P
Connected seq. 
>SFI738P.Seq
ATATATAATATTACACCCCATAACTAATAAAATGTCATTCAATTCAAGAATTGAAACTAT
TTCTCGTCACTTAAGCACTGGACCAATTTTAGAATCAAATCCAACTTCTGGATCAGTTAA
ATCAGGAGATGATATTGTAATTGTTGCACCATTTCGTACAGCAATTTGTAAAGCTAAAAG
AGGAGCATTCAAAGAGACAGCACCAGATGATTTATTAGCACCAGTTATTAAACATATTAT
CAAAGTTACCAAATTAGATCCAAAATTAATTGGAGATGTTGTTATGGGAGCAGTATTACC
AAGATCATCACAAGGTGCAACCCGAAGTTAGAGTTGCCACATTATTAGCAGGTTTACCAA
AGGAAGTACCATGTTATACAGTCAACAGACGATGTTCATCAGGTTTACAAGCAATTGCCA
ATTGTGCAGCAGCAGTCAAAGCAGGTTTCTATGACATTGGTTTAGCAGGCGGTGTAGAAT
CAATGAGTTTAAATCCAATGGCATGGGATGGGTGGTTTCAACGAGGTTGCCCAAGAGGAT
CCAATCATTAG----------CGCAGAGCGTTTTGGTGTCACCAGAAAAGACCAAGATGA
ATTCTCTGTAAATTCACACAAGAAGGCAGGTGCCGCCCAAAAAGCAGGTAAATTTGACGA
TGAAATCGTTCCAGTCACCGTAAAGACCGAGGATGGCAAAACCATCGTCGTCGATAAAGA
CGAAGGTATCCGTGAGAAAACCACCGTTGCAGATTTGGCCAAATTAAAACCAGCTTTCAA
AGAGGGTGGTACAACCACCGCTGGTAACTCTAGTCAAATGAGTGATGGTGCCGCCGCTTG
TTTAGTTATGAAAAGAAGTACCGCCGAAAGATTGGGTCTCAAGGTTGAATTGGTTTTCGT
AGCTTTTGCTGCTGTCGGTGTCGAACCATCCATTATGGGTATTGGTCCAGCCGTTGCAAT
TCCAGCCGCCTTAAAACAAGCTGGTCTCACCACTAAAGATATCGACGTTTTTGAAATCAA
TGAAGCTTTTGCTTCTCAAGCATTTTACAGTTGTAAGGTTTTGGGTTTGGATATGAACAA
AGTTAATCCAAATGGCTCTGGTATCGCTTTAGGTCATCCATTAGGTGCTACTGGTGCCCG
TCAAATGGCTACCATTTCAAGAGAATTACATCGTCGTAAAGGTAAATATGGTGTAATCTC
TATGTGTAT
Length of connected seq. 1199
Full length Seq ID -
Full length Seq. -
Length of full length seq. -