SFI706
Library SF
(Link to library)
Clone ID SFI706
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15545-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>SFI706 (SFI706Q) /CSM/SF/SFI7-A/SFI706Q.Seq.d/
XXXXXXXXXXTAAAGAAACGTATTATGAGAGCCACCGAANGTTGATACTTTAAATTCAAT
ACCAATGATGTTCTCAACTTCAAATAGATTCGTTTATTATGTACCAGCAAAATCAAATGA
CGATCCAAGATGGGATGCAGTTATCGATAAACTTCAAATGGTTGGTAGAGGCAATGGTGG
CGCTGTTAGAGGTATCTATAAAGGTGTTATTGAGACCACTTTCTTTGGCAAAAGAGTTTA
TTTGGTTGGTACCTATTCACCATTCTATAGTCAACAACAAAGAAATAAAAGTCAACGTAT
ACTTTTCAATGATTTTCCAAAGGAAGAATTTGATCCAACCATCACAAATCCTTTAACAAG
TACTATGCTATTTAGAACTGATAAAGATCTCTCATTGGATATTACTTTGGCTGAAAAAGT
TTTCTCTTGTAAAGACTTTTGTGAAAAACATAAAGTATCATGTTTAGAATCTGATATGAT
GTTATTAACTGATAGTACTATAGTTTTACTACAATTGGAACAACATTGTAGTCAAGTAAA
CTATATACCAAGTTA
sequence update 2001.11.22
Translated Amino Acid sequence
---rnvl*EPPXVDTLNSIPMMFSTSNRFVYYVPAKSNDDPRWDAVIDKLQMVGRGNGGA
VRGIYKGVIETTFFGKRVYLVGTYSPFYSQQQRNKSQRILFNDFPKEEFDPTITNPLTST
MLFRTDKDLSLDITLAEKVFSCKDFCEKHKVSCLESDMMLLTDSTIVLLQLEQHCSQVNY
IPS


Translated Amino Acid sequence (All Frames)
Frame A:
---ketyyeshrxlil*iqyq*csqlqidsfimyqqnqmtiqdgmqlsinfkwlveamva
llevsikvllrplslakefiwlvpihhsivnnkeikvnvyfsmifqrknliqpsqil*qv
lcylelikishwillwlkkfslvktfvknikyhv*nli*cy*livl*fyynwnnivvk*t
iyqv


Frame B:
---kkrimratex*yfkfntndvlnfk*irllctskik*rskmgcsyr*tsngw*rqwwr
c*ryl*rcy*dhflwqkslfgwylftil*sttkk*kstytfq*fskgri*snhhksfnky
yai*n**rsligyyfg*ksfll*rll*kt*simfri*ydvin**yysfttigttl*sskl
ytkl


Frame C:
---rnvl*EPPXVDTLNSIPMMFSTSNRFVYYVPAKSNDDPRWDAVIDKLQMVGRGNGGA
VRGIYKGVIETTFFGKRVYLVGTYSPFYSQQQRNKSQRILFNDFPKEEFDPTITNPLTST
MLFRTDKDLSLDITLAEKVFSCKDFCEKHKVSCLESDMMLLTDSTIVLLQLEQHCSQVNY
IPS


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SFI706 (SFI706Q) /CSM/SF/SFI7-A/SFI706Q.Seq.d/ 1074 0.0
AFK872 (AFK872Q) /CSM/AF/AFK8-C/AFK872Q.Seq.d/ 1070 0.0
CHD312 (CHD312Q) /CSM/CH/CHD3-A/CHD312Q.Seq.d/ 1061 0.0
CFG834 (CFG834Q) /CSM/CF/CFG8-B/CFG834Q.Seq.d/ 1061 0.0
AFO831 (AFO831Q) /CSM/AF/AFO8-B/AFO831Q.Seq.d/ 1047 0.0
AFM267 (AFM267Q) /CSM/AF/AFM2-C/AFM267Q.Seq.d/ 1047 0.0
AHK215 (AHK215Q) /CSM/AH/AHK2-A/AHK215Q.Seq.d/ 1045 0.0
AFF364 (AFF364Q) /CSM/AF/AFF3-C/AFF364Q.Seq.d/ 1045 0.0
SFE435 (SFE435Q) /CSM/SF/SFE4-B/SFE435Q.Seq.d/ 1027 0.0
AFI627 (AFI627Q) /CSM/AF/AFI6-B/AFI627Q.Seq.d/ 1017 0.0

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC011252|AC011252.4 Drosophila melanogaster, chromosome 3R, region 83B-83C, BAC clone BACR23H21, complete sequence. 42 0.036 6
AI484136|AI484136.1 EST248943 tomato resistant, Cornell Lycopersicon esculentum cDNA clone cLER1C5, mRNA sequence. 38 0.10 2
BG128254|BG128254.1 EST473900 tomato shoot/meristem Lycopersicon esculentum cDNA clone cTOF19D15 5' sequence, mRNA sequence. 38 0.10 2
AI490786|AI490786.1 EST241494 tomato shoot, Cornell Lycopersicon esculentum cDNA clone cLEB3H9 similar to cinnamic acid 4-hydroxylase, mRNA sequence. 38 0.10 2
BG133859|BG133859.1 EST466751 tomato crown gall Lycopersicon esculentum cDNA clone cTOE14I10 5' sequence, mRNA sequence. 38 0.10 2
AI773934|AI773934.1 EST255034 tomato resistant, Cornell Lycopersicon esculentum cDNA clone cLER8N1, mRNA sequence. 38 0.10 2
AE003601|AE003601.3 Drosophila melanogaster chromosome 3R, section 7 of 118 of the complete sequence. 42 0.25 7
AC092695|AC092695.8 Homo sapiens 3 BAC RP11-81E19 (Roswell Park Cancer Institute Human BAC Library) complete sequence. 42 0.30 5
BX323843|BX323843.9 Zebrafish DNA sequence from clone CH211-10A23 in linkage group 19. 46 0.53 1
AC123464|AC123464.4 Rattus norvegicus clone CH230-17P22, WORKING DRAFT SEQUENCE, 1 ordered piece. 46 0.53 1
dna update 2004. 3. 8
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

Y17877_1(Y17877|pid:none) Sycon raphanus mRNA for insulin recept... 36 0.75
BT011349_1(BT011349|pid:none) Drosophila melanogaster RH02355 fu... 35 0.98
AY069808_1(AY069808|pid:none) Drosophila melanogaster SD04942 fu... 35 0.98
AE014297_4620(AE014297|pid:none) Drosophila melanogaster chromos... 35 0.98
AC009322_3(AC009322|pid:none) Arabidopsis thaliana chromosome I ... 34 2.2
AE009439_1402(AE009439|pid:none) Methanopyrus kandleri AV19, com... 33 3.7
AX814538_1(AX814538|pid:none) Sequence 19 from Patent WO03064471. 33 3.7
DQ812518_2(DQ812518|pid:none) Spironucleus barkhanus isolate Sp1... 33 3.7
AJ010592_91(AJ010592|pid:none) Guillardia theta DNA for complete... 33 3.7
FM992689_214(FM992689|pid:none) Candida dubliniensis CD36 chromo... 33 4.9
protein update 2009. 5.26
PSORT

psg: 0.75 gvh: 0.39 alm: 0.41 top: 0.53 tms: 0.00 mit: 0.24 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: cytoplasmic
40.0 %: nuclear
8.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: vesicles of secretory system

>> prediction for SFI706 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SFI706Z
3' end seq.
>SFI706Z.Seq
NNNNNNNNNNTAAAGAAACGTATTATGAGAGCCACCGAANGTTGATACTTTAAATTCAAT
ACCAATGATGTTCTCAACTTCAAATAGATTCGTTTATTATGTACCAGCAAAATCAAATGA
CGATCCAAGATGGGATGCAGTTATCGATAAACTTCAAATGGTTGGTAGAGGCAATGGTGG
CGCTGTTAGAGGTATCTATAAAGGTGTTATTGAGACCACTTTCTTTGGCAAAAGAGTTTA
TTTGGTTGGTACCTATTCACCATTCTATAGTCAACAACAAAGAAATAAAAGTCAACGTAT
ACTTTTCAATGATTTTCCAAAGGAAGAATTTGATCCAACCATCACAAATCCTTTAACAAG
TACTATGCTATTTAGAACTGATAAAGATCTCTCATTGGATATTACTTTGGCTGAAAAAGT
TTTCTCTTGTAAAGACTTTTGTGAAAAACATAAAGTATCATGTTTAGAATCTGATATGAT
GTTATTAACTGATAGTACTATAGTTTTACTACAATTGGAACAACATTGTAGTCAAGTAAA
CTATATACCAAGTTA
Length of 3' end seq. 555
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -