>SFI642 (SFI642Q) /CSM/SF/SFI6-B/SFI642Q.Seq.d/
XXXXXXXXXXTTGATGGAATTTGAAGATGCCTTAAAGTATCGTTTCAATCCATTCGATGT
AACAAAGATTTGGTCACACAAAGACTATCCATTAATTCAAATTGGTCGTATGGTTTTGAA
TCGTAATCCAGAGAATTACTTTGCTGAAGTTGAACAAGCTGCCTTCTCACCATCCCACAT
GGTTCCAGGTATTGAACCATCACCAGATAAGATGTTACAAGGTCGTCTCTTCTCTTATCC
AGATACTCATCGTCATCGTTTAGGTGTAAACTATCAACAAATCCCAGTCAATTGTCCATT
CGCCGTAAAGGGTGGTGTTAAAAACTACCAACGTGATGGTTTCATGGCTGTCAATGGTAA
TGGTGGTAAAGGTCCAAACTATCAACCAAACTCTTTCGGTGGTCCAGAGCCACATCCAGA
ATTTGCTCAACATAAATTTGACGTCTCTGGTTTCGCTGCTCGTCAACCATACAATCATCC
AAATGACGACTTTGTTCAACCAGGTGATTTATATAGACTCATGTCTGAAGATGCCAAATC
TCGTTTCGTCTCTAATTTAGTCGGTCACATGTCCGGTGTCACCATCAAAGAAATTCAAGT
TCGTGCCGTTTCAAACTTTTACAAGGCTGACAAAGATTTAGGTGCTCGTTTATGTAAGGG
TCTTGGTATTGATGTTAANATGTCATCAAATTCGCTGCTAGTATCAAACTTGTAAATCAA
TA

---MEFEDALKYRFNPFDVTKIWSHKDYPLIQIGRMVLNRNPENYFAEVEQAAFSPSHMV
PGIEPSPDKMLQGRLFSYPDTHRHRLGVNYQQIPVNCPFAVKGGVKNYQRDGFMAVNGNG
GKGPNYQPNSFGGPEPHPEFAQHKFDVSGFAARQPYNHPNDDFVQPGDLYRLMSEDAKSR
FVSNLVGHMSGVTIKEIQVRAVSNFYKADKDLGARLCKGLGIDVXMSSNSLLVSNL*in

Frame A:
---*wnlkmp*sivsihsm*qrfghtktih*fklvvwf*iviqritllklnklpshhptw
fqvlnhhqircykvvssliqiliviv*v*tinksqsivhsp*rvvlkttnvmvswlsmvm
vvkvqtinqtlsvvqshiqnllninltslvsllvnhtiiqmttlfnqviyidsclkmpnl
vssli*svtcpvspskkfkfvpfqtftrltki*vlvyvrvlvlmlxchqirc*yqtcksi


Frame B:
---dgi*rclkvsfqsircnkdlvtqrlsinsnwsygfes*srellc*s*tsclltiphg
sry*titr*dvtrsslllsryssssfrcklstnpsqlsirrkgwc*klpt*wfhgcqw*w
w*rsklstklfrwsratsricst*i*rlwfrcsstiqssk*rlcstr*fi*thv*rcqis
frl*fsrshvrchhqrnssscrfkllqg*qrfrcsfm*gswy*c*xvikfaasiklvnq


Frame C:
---MEFEDALKYRFNPFDVTKIWSHKDYPLIQIGRMVLNRNPENYFAEVEQAAFSPSHMV
PGIEPSPDKMLQGRLFSYPDTHRHRLGVNYQQIPVNCPFAVKGGVKNYQRDGFMAVNGNG
GKGPNYQPNSFGGPEPHPEFAQHKFDVSGFAARQPYNHPNDDFVQPGDLYRLMSEDAKSR
FVSNLVGHMSGVTIKEIQVRAVSNFYKADKDLGARLCKGLGIDVXMSSNSLLVSNL*in

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFI642 (SFI642Q) /CSM/SF/SFI6-B/SFI642Q.Seq.d/                       1405   0.0
CFI568 (CFI568Q) /CSM/CF/CFI5-C/CFI568Q.Seq.d/                       1390   0.0
AFE574 (AFE574Q) /CSM/AF/AFE5-D/AFE574Q.Seq.d/                       1390   0.0
AFE294 (AFE294Q) /CSM/AF/AFE2-D/AFE294Q.Seq.d/                       1390   0.0
VFH727 (VFH727Q) /CSM/VF/VFH7-B/VFH727Q.Seq.d/                       1382   0.0
SFK640 (SFK640Q) /CSM/SF/SFK6-B/SFK640Q.Seq.d/                       1376   0.0
SFJ685 (SFJ685Q) /CSM/SF/SFJ6-D/SFJ685Q.Seq.d/                       1376   0.0
FC-142 (FC-142Q) /CSM/CG/CG-FC/FC-142Q.Seq.d/                        1376   0.0
CFI885 (CFI885Q) /CSM/CF/CFI8-D/CFI885Q.Seq.d/                       1376   0.0
CFF134 (CFF134Q) /CSM/CF/CFF1-B/CFF134Q.Seq.d/                       1376   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF090443|AF090443.1 Dictyostelium discoideum catalase (cat) mRNA, complete cds.  1324   0.0    3
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.  1324   0.0    3
AJ400965|AJ400965.1 Proteus mirabilis ORF1 DNA, katA gene and menE gene, strain PR.    76   9e-17  2
AJ400964|AJ400964.1 Proteus mirabilis ORF1 DNA, katA gene and menE gene, wild type.    76   9e-17  2
AB064338|AB064338.1 Candida boidinii CTA1 gene for peroxisomal catalase, complete cds.    82   9e-17  2
AR375090|AR375090.1 Sequence 96 from patent US 6605709.            76   9e-17  2
E65314|E65314.1 Novel catalase, gene of said catalase and composition containing  said  catalase, and process for preparing catalase using the genetic engineering  technology.    86   8e-13  1
CC133697|CC133697.1 NDL.83G19.SP6 Notre Dame Liverpool Aedes aegypti genomic clone NDL.83G19, DNA sequence.    46   6e-12  5
BX564920|BX564920.1 Glossina morsitans morsitans (Tseatse fly) EST from adult infected  midgut library, clone Tse74e09_q1c.    74   3e-09  1
BX554380|BX554380.1 Glossina morsitans morsitans (Tseatse fly) EST from adult infected  midgut library, clone Tse15b01_q1c.    74   3e-09  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF090443_1(AF090443|pid:none) Dictyostelium discoideum catalase ...   468   e-131
CQ796333_1(CQ796333|pid:none) Sequence 109 from Patent WO2004027...   272   6e-72
AE017333_3935(AE017333|pid:none) Bacillus licheniformis DSM 13, ...   272   6e-72
CP000560_826(CP000560|pid:none) Bacillus amyloliquefaciens FZB42...   267   2e-70
CP000300_481(CP000300|pid:none) Methanococcoides burtonii DSM 62...   265   1e-69
(O93662) RecName: Full=Catalase;          EC=1.11.1.6;  &AJ00593...   258   1e-67
AL009126_914(AL009126|pid:none) Bacillus subtilis subsp. subtili...   258   1e-67
(P26901) RecName: Full=Vegetative catalase;          EC=1.11.1.6...   258   2e-67
AY378080_1(AY378080|pid:none) Tetrahymena thermophila putative c...   253   3e-66
(Q9PWF7) RecName: Full=Catalase;          EC=1.11.1.6;  &AB03187...   247   2e-64

 psg: 0.75  gvh: 0.24  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.14  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 28.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: Golgi
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for SFI642 is nuc

>SFI642Z.Seq
NNNNNNNNNNTTGATGGAATTTGAAGATGCCTTAAAGTATCGTTTCAATCCATTCGATGT
AACAAAGATTTGGTCACACAAAGACTATCCATTAATTCAAATTGGTCGTATGGTTTTGAA
TCGTAATCCAGAGAATTACTTTGCTGAAGTTGAACAAGCTGCCTTCTCACCATCCCACAT
GGTTCCAGGTATTGAACCATCACCAGATAAGATGTTACAAGGTCGTCTCTTCTCTTATCC
AGATACTCATCGTCATCGTTTAGGTGTAAACTATCAACAAATCCCAGTCAATTGTCCATT
CGCCGTAAAGGGTGGTGTTAAAAACTACCAACGTGATGGTTTCATGGCTGTCAATGGTAA
TGGTGGTAAAGGTCCAAACTATCAACCAAACTCTTTCGGTGGTCCAGAGCCACATCCAGA
ATTTGCTCAACATAAATTTGACGTCTCTGGTTTCGCTGCTCGTCAACCATACAATCATCC
AAATGACGACTTTGTTCAACCAGGTGATTTATATAGACTCATGTCTGAAGATGCCAAATC
TCGTTTCGTCTCTAATTTAGTCGGTCACATGTCCGGTGTCACCATCAAAGAAATTCAAGT
TCGTGCCGTTTCAAACTTTTACAAGGCTGACAAAGATTTAGGTGCTCGTTTATGTAAGGG
TCTTGGTATTGATGTTAANATGTCATCAAATTCGCTGCTAGTATCAAACTTGTAAATCAA
TA