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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFI612
Library SF
(Link to library)
Clone ID SFI612
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U15599-1
Original site URL
Representative seq. ID SFI612P
(Link to Original site)
Representative DNA sequence 
>SFI612 (SFI612Q) /CSM/SF/SFI6-A/SFI612Q.Seq.d/
GTTAAAAGTTAGGCAAAAACACCAGGACTTTAAAAAAACACTGCTTTTTTTTTTATATTT
TTTTATTTTTTTTTTATTTTTTTTNATTCATATTAATTCTGAATNGGATATAAAAGTAAT
NTTNCAAATAAAAAAAAAAXXXXXXXXXXGTCAAACTATGGTAGTGATAGTGGTGGTGAA
TGTGGTGTACCATACAGTAAGCGTTTCCATATGACAGGTGCAGAGGATTCAACTCGTAAC
CTTTGGTTCTCCTATGAGAATGGACCAATTCATTTCACTGTAATGTCAGCTGAACATGAT
TTCCTTCCAGGTAGTCCACAATTTGAATGGTTAAATAATGATTTAGCATCAGTTGACCGT
GAAAAAACTCCATGGGTAATCTTTAGTGGTCATCGTCCATTATATACCTCTGCATTACCA
GAGGATTCAATTGGTTCAATCACAGCTCTTCGTGAAGCTATTGAACCATTATTCCAAAAG
TATGATGTTGATATGGCATTATGGGGTCATGTTCACATCTATGAACGTACTTGTGGTTTC
ATTGGTAATTTCACTTGTGCTGATAATGATAATGATGGTACCGTTCATGTTATCATTGGT
ATGGCTGGTAATACTTACTCTGTACCTTGGGAAGGCTCTGATATTAGCTCTGGTAATGGT
CACGAAGATGAACCAGAATGGTCAATCTTTAGAAGTATCTCTTATGGTCATGTAAGATTC
TATGCAAATACAACCTCACTTTATTTTGAATTTGTTGGTAATCATAGATCAATTGTTCAT
NACTCTTTTGGTTAAATAAATAAATTAAATAATAAAAAAAAATA
sequence update 2001.11.22
Translated Amino Acid sequence 
LKVRQKHQDFKKTLLFFLYFFIFFLFFXIHINSEXDIKVXXQIKKK---

---SNYGSDSGGECGVPYSKRFHMTGAEDSTRNLWFSYENGPIHFTVMSAEHDFLPGSPQ
FEWLNNDLASVDREKTPWVIFSGHRPLYTSALPEDSIGSITALREAIEPLFQKYDVDMAL
WGHVHIYERTCGFIGNFTCADNDNDGTVHVIIGMAGNTYSVPWEGSDISSGNGHEDEPEW
SIFRSISYGHVRFYANTTSLYFEFVGNHRSIVHXSFG*inklnnkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
vks*aktpgl*kntafffiffyfffiffxsy*f*xgyksnxxnkkk---

---vklw***ww*mwctiq*afpydrcrgfns*plvll*ewtnsfhcnvs*t*fpsr*st
i*mvk**fsis*p*knsmgnl*wsssiiylcitrgfnwfnhsss*sy*tiipkv*c*ygi
mgscshl*tylwfhw*fhlc*****wyrscyhwygw*yllctlgrl*y*lw*wsrr*trm
vnl*kyllwsckilckynltlf*icw*s*incsxlfwlnk*ik**kki

Frame B:
LKVRQKHQDFKKTLLFFLYFFIFFLFFXIHINSEXDIKVXXQIKKK---

---SNYGSDSGGECGVPYSKRFHMTGAEDSTRNLWFSYENGPIHFTVMSAEHDFLPGSPQ
FEWLNNDLASVDREKTPWVIFSGHRPLYTSALPEDSIGSITALREAIEPLFQKYDVDMAL
WGHVHIYERTCGFIGNFTCADNDNDGTVHVIIGMAGNTYSVPWEGSDISSGNGHEDEPEW
SIFRSISYGHVRFYANTTSLYFEFVGNHRSIVHXSFG*inklnnkkk

Frame C:
*klgkntrtlkkhcfffyiflfffyffxfililnxi*k*xxk*kk---

---qtmvvivvvnvvyhtvsvsi*qvqriqlvtfgspmrmdqfisl*cqlnmisfqvvhn
lng*imi*hqltvkklhg*slvvivhyiplhyqriqlvqsqlfvkllnhysksmmliwhy
gvmftsmnvlvvslvislvlimimmvpfmlslvwlviltlylgkalilalvmvtkmnqng
qslevslmvm*dsmqiqphfilnllviidqlfxtllvk*in*iikkn
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFI612 (SFI612Q) /CSM/SF/SFI6-A/SFI612Q.Seq.d/                       1310   0.0
VHB351 (VHB351Q) /CSM/VH/VHB3-C/VHB351Q.Seq.d/                       1308   0.0
AFN142 (AFN142Q) /CSM/AF/AFN1-B/AFN142Q.Seq.d/                       1219   0.0
AFH636 (AFH636Q) /CSM/AF/AFH6-B/AFH636Q.Seq.d/                       1191   0.0
VHE835 (VHE835Q) /CSM/VH/VHE8-B/VHE835Q.Seq.d/                        880   0.0
SSI695 (SSI695Q) /CSM/SS/SSI6-D/SSI695Q.Seq.d/                         42   0.013
SSG836 (SSG836Q) /CSM/SS/SSG8-B/SSG836Q.Seq.d/                         42   0.013
SSG318 (SSG318Q) /CSM/SS/SSG3-A/SSG318Q.Seq.d/                         42   0.013
SSD742 (SSD742Q) /CSM/SS/SSD7-B/SSD742Q.Seq.d/                         42   0.013
SSC795 (SSC795Q) /CSM/SS/SSC7-D/SSC795Q.Seq.d/                         42   0.013
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AE014826|AE014826.1 Plasmodium falciparum 3D7 chromosome 14 section 11 of 13 of thecomplete sequence.    40   1e-04  10
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    36   3e-04  16
AF492661|AF492661.1 Arabidopsis thaliana purple acid phosphatase (PAP9) mRNA, complete cds.    54   4e-04  2
AY090895|AY090895.1 Arabidopsis thaliana truncated putative purple acid phosphatase (PAP9) mRNA, complete cds, alternatively spliced.    54   5e-04  2
BF521364|BF521364.1 EST458840 DSIL Medicago truncatula cDNA clone pDSIL-43M17, mRNA sequence.    46   0.001  3
AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence.    44   0.002  10
BX510944|BX510944.1 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEY-286H17.    40   0.002  2
AC006284|AC006284.4 Arabidopsis thaliana chromosome 2 clone T4M8 map CIC11A04, complete sequence.    54   0.003  1
AW697837|AW697837.1 EST0020 carnation flower specific cDNA library Dianthus caryophyllus cDNA clone HM020 5' similar to hypothetical protein, mRNA sequence.    54   0.003  1
AW697825|AW697825.1 EST0008 carnation flower specific cDNA library Dianthus caryophyllus cDNA clone HM008 5' similar to putative protein, mRNA sequence.    54   0.003  1
dna update 2004. 1. 3
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC068197_11(AC068197|pid:none) Genomic sequence for Arabidopsis ...   179   1e-43
AY090895_1(AY090895|pid:none) Arabidopsis thaliana truncated put...   174   2e-42
AC006284_10(AC006284|pid:none) Arabidopsis thaliana chromosome 2...   174   2e-42
AK100372_1(AK100372|pid:none) Oryza sativa Japonica Group cDNA c...   164   3e-39
EU975503_1(EU975503|pid:none) Zea mays clone 490987 hydrolase/ p...   162   1e-38
AM458569_4(AM458569|pid:none) Vitis vinifera contig VV78X180401....   162   2e-38
EF678036_1(EF678036|pid:none) Picea sitchensis clone WS02821_B10...   153   6e-36
AM466002_2(AM466002|pid:none) Vitis vinifera contig VV78X188747....   150   5e-35
EU956598_1(EU956598|pid:none) Zea mays clone 1567723 nucleotide ...   140   6e-32
AP003221_7(AP003221|pid:none) Oryza sativa Japonica Group genomi...   139   1e-31
protein update 2009. 5.26
PSORT 

 psg: 0.83  gvh: 0.66  alm: 0.20  top: 0.20  tms: 0.07  mit: 0.20  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 32.0 %: mitochondrial
	 20.0 %: Golgi
	 16.0 %: cytoplasmic
	 16.0 %: nuclear
	  8.0 %: endoplasmic reticulum
	  4.0 %: extracellular, including cell wall
	  4.0 %: vacuolar

>> prediction for SFI612 is mit
5' end seq. ID SFI612F
5' end seq. 
>SFI612F.Seq
GTTAAAAGTTAGGCAAAAACACCAGGACTTTAAAAAAACACTGCTTTTTTTTTTATATTT
TTTTATTTTTTTTTTATTTTTTTTNATTCATATTAATTCTGAATNGGATATAAAAGTAAT
NTTNCAAATAAAAAAAAAA----------
Length of 5' end seq. 139
3' end seq. ID SFI612Z
3' end seq. 
>SFI612Z.Seq
NNNNNNNNNNGTCAAACTATGGTAGTGATAGTGGTGGTGAATGTGGTGTACCATACAGTA
AGCGTTTCCATATGACAGGTGCAGAGGATTCAACTCGTAACCTTTGGTTCTCCTATGAGA
ATGGACCAATTCATTTCACTGTAATGTCAGCTGAACATGATTTCCTTCCAGGTAGTCCAC
AATTTGAATGGTTAAATAATGATTTAGCATCAGTTGACCGTGAAAAAACTCCATGGGTAA
TCTTTAGTGGTCATCGTCCATTATATACCTCTGCATTACCAGAGGATTCAATTGGTTCAA
TCACAGCTCTTCGTGAAGCTATTGAACCATTATTCCAAAAGTATGATGTTGATATGGCAT
TATGGGGTCATGTTCACATCTATGAACGTACTTGTGGTTTCATTGGTAATTTCACTTGTG
CTGATAATGATAATGATGGTACCGTTCATGTTATCATTGGTATGGCTGGTAATACTTACT
CTGTACCTTGGGAAGGCTCTGATATTAGCTCTGGTAATGGTCACGAAGATGAACCAGAAT
GGTCAATCTTTAGAAGTATCTCTTATGGTCATGTAAGATTCTATGCAAATACAACCTCAC
TTTATTTTGAATTTGTTGGTAATCATAGATCAATTGTTCATNACTCTTTTGGTTAAATAA
ATAAATTAAATAATAAAAAAAAATA
Length of 3' end seq. 685
Connected seq. ID SFI612P
Connected seq. 
>SFI612P.Seq
GTTAAAAGTTAGGCAAAAACACCAGGACTTTAAAAAAACACTGCTTTTTTTTTTATATTT
TTTTATTTTTTTTTTATTTTTTTTNATTCATATTAATTCTGAATNGGATATAAAAGTAAT
NTTNCAAATAAAAAAAAAA----------GTCAAACTATGGTAGTGATAGTGGTGGTGAA
TGTGGTGTACCATACAGTAAGCGTTTCCATATGACAGGTGCAGAGGATTCAACTCGTAAC
CTTTGGTTCTCCTATGAGAATGGACCAATTCATTTCACTGTAATGTCAGCTGAACATGAT
TTCCTTCCAGGTAGTCCACAATTTGAATGGTTAAATAATGATTTAGCATCAGTTGACCGT
GAAAAAACTCCATGGGTAATCTTTAGTGGTCATCGTCCATTATATACCTCTGCATTACCA
GAGGATTCAATTGGTTCAATCACAGCTCTTCGTGAAGCTATTGAACCATTATTCCAAAAG
TATGATGTTGATATGGCATTATGGGGTCATGTTCACATCTATGAACGTACTTGTGGTTTC
ATTGGTAATTTCACTTGTGCTGATAATGATAATGATGGTACCGTTCATGTTATCATTGGT
ATGGCTGGTAATACTTACTCTGTACCTTGGGAAGGCTCTGATATTAGCTCTGGTAATGGT
CACGAAGATGAACCAGAATGGTCAATCTTTAGAAGTATCTCTTATGGTCATGTAAGATTC
TATGCAAATACAACCTCACTTTATTTTGAATTTGTTGGTAATCATAGATCAATTGTTCAT
NACTCTTTTGGTTAAATAAATAAATTAAATAATAAAAAAAAATA
Length of connected seq. 814
Full length Seq ID -
Full length Seq. -
Length of full length seq. -