>SFI602 (SFI602Q) /CSM/SF/SFI6-A/SFI602Q.Seq.d/
XXXXXXXXXXGTTTCACTATCTGAACAAAATTTAGTTGATTGCTCTGGTCCAGAAGAAAA
CTTTGGTTGTGATGGTGGTTTAATGAATAATGCATTTGATTATATCATTAAAAACAAGGG
TATTGACACTGAAAGTAGTTATCCATATACTGCTGAAACTGGTTCAACATGTTTATTCAA
TAAATCTGATATTGGTGCAACCATTAAAGGTTATGTTAACATTACTGCCGGTTCAGAGAT
TTCATTAGAGAATGGTGCTCAACATGGTCCAGTATCTGTTGCAATTGATGCTTCCCATAA
TAGTTTCCAACTCTATACATCTGGTATCTATTATGAGCCAAAATGTTCTCCAACTGAATT
GGATCATGGTGTTTTAGTTGTTGGTTATGGTGTTCAAGGTAAAGATGATGAAGGTCCAGT
ATTAAACAGAAAACAAACCATTGTTATCCACAAGAATGAAGATAATAAAGTTGAATCCTC
TGATGATTCATCTGATAGTGTTAGACCAAAGGCAAATAATTATTGGATCGTTAAAAATTC
ATGGGGTACCTCATGGGGTATAAAAGGTTACATTTTAATGTCAAAGG

---SLSEQNLVDCSGPEENFGCDGGLMNNAFDYIIKNKGIDTESSYPYTAETGSTCLFNK
SDIGATIKGYVNITAGSEISLENGAQHGPVSVAIDASHNSFQLYTSGIYYEPKCSPTELD
HGVLVVGYGVQGKDDEGPVLNRKQTIVIHKNEDNKVESSDDSSDSVRPKANNYWIVKNSW
GTSWGIKGYILMSK

Frame A:
---fhylnki*lialvqkktlvvmvv**imhliislktrvltlkvvihillklvqhvysi
nlilvqplkvmltllpvqrfh*rmvlnmvqyllqlmlpiivsnsihlvsimsqnvlqlnw
imvf*llvmvfkvkmmkvqy*tenkpllstrmkiiklnplmihlivldqrqiiigslkih
gvphgv*kvtf*cqr


Frame B:
---fti*tkfs*llwsrrklwl*wwfne*ci*lyh*kqgy*h*k*lsiyc*nwfnmfiq*
i*ywcnh*rlc*hycrfrdfirewcstwssiccn*cfp**fptlyiwyll*akmfsn*ig
swcfscwlwcsr*r**rssikqktnhcypqe*r**s*il**fi**c*tkgk*lldr*kfm
gylmgykrlhfnvk


Frame C:
---SLSEQNLVDCSGPEENFGCDGGLMNNAFDYIIKNKGIDTESSYPYTAETGSTCLFNK
SDIGATIKGYVNITAGSEISLENGAQHGPVSVAIDASHNSFQLYTSGIYYEPKCSPTELD
HGVLVVGYGVQGKDDEGPVLNRKQTIVIHKNEDNKVESSDDSSDSVRPKANNYWIVKNSW
GTSWGIKGYILMSK

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFK574 (SFK574Q) /CSM/SF/SFK5-D/SFK574Q.Seq.d/                       1144   0.0
SFI602 (SFI602Q) /CSM/SF/SFI6-A/SFI602Q.Seq.d/                       1144   0.0
AHH295 (AHH295Q) /CSM/AH/AHH2-D/AHH295Q.Seq.d/                       1144   0.0
AFO753 (AFO753Q) /CSM/AF/AFO7-C/AFO753Q.Seq.d/                       1144   0.0
AFO674 (AFO674Q) /CSM/AF/AFO6-D/AFO674Q.Seq.d/                       1144   0.0
AFO533 (AFO533Q) /CSM/AF/AFO5-B/AFO533Q.Seq.d/                       1144   0.0
AFO194 (AFO194Q) /CSM/AF/AFO1-D/AFO194Q.Seq.d/                       1144   0.0
AFM293 (AFM293Q) /CSM/AF/AFM2-D/AFM293Q.Seq.d/                       1144   0.0
AFK396 (AFK396Q) /CSM/AF/AFK3-D/AFK396Q.Seq.d/                       1144   0.0
AFK395 (AFK395Q) /CSM/AF/AFK3-D/AFK395Q.Seq.d/                       1144   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

X03344|X03344.1 Dictyostelium discoideum mRNA for cysteine proteinase 2.  1144   0.0    1
M16039|M16039.1 Dictyostelium discoideum pst-cath gene encoding pst-cathepsin, complete cds.   961   0.0    2
BJ171907|BJ171907.1 Physcomitrella patens subsp. patens cDNA clone:pph30i20, 3' end, single read.   595   0.0    2
L36205|L36205.1 Dictyostelium discoideum cysteine proteinase CP5 mRNA, complete cds.    88   3e-54  6
L36204|L36204.1 Dictyostelium discoideum cysteine proteinase (CP4) mRNA, complete cds.    70   1e-48  6
AC117072|AC117072.2 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence.    88   1e-40  7
U72746|U72746.1 Dictyostelium discoideum cysteine proteinase (cprG) mRNA, complete cds.    82   4e-16  3
AF426414|AF426414.1 Delia radicum cathepsin L-like cysteine protease precursor (CP1) mRNA, complete cds.    56   5e-16  4
U72745|U72745.1 Dictyostelium discoideum cysteine proteinase (cprF) mRNA, complete cds.    46   2e-11  4
BQ834906|BQ834906.1 Po_ad_04H08_TEXF1 Psoroptes ovis mixed Psoroptes ovis cDNA clone Po_ad_04H08 5' similar to O46030 CYSTEINE PROTEINASE. Sitophilus zeamais (maize weevil), mRNA sequence.    50   2e-06  3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P04989) RecName: Full=Cysteine proteinase 2;          EC=3.4.22...   381   e-105
(P54640) RecName: Full=Cysteine proteinase 5;          EC=3.4.22...   206   4e-52
L36205_1(L36205|pid:none) Dictyostelium discoideum cysteine prot...   206   4e-52
BC075887_1(BC075887|pid:none) Danio rerio cathepsin L.1, mRNA (c...   193   2e-48
AY220615_1(AY220615|pid:none) Hydra vulgaris cathepsin L precurs...   191   1e-47
DQ280314_1(DQ280314|pid:none) Hymeniacidon perlevis cathepsin L ...   191   2e-47
AY554271_1(AY554271|pid:none) Heterodera glycines cathepsin L-li...   187   1e-46
DQ474246_1(DQ474246|pid:none) Lygus lineolaris cathepsin-L mRNA,...   186   4e-46
L36204_1(L36204|pid:none) Dictyostelium discoideum cysteine prot...   184   2e-45
AY336798_1(AY336798|pid:none) Rhipicephalus haemaphysaloides hae...   183   3e-45

 psg: 0.75  gvh: 0.34  alm: 0.50  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 36.0 %: nuclear
	 12.0 %: cytoskeletal
	  8.0 %: mitochondrial

>> prediction for SFI602 is cyt

>SFI602Z.Seq
NNNNNNNNNNGTTTCACTATCTGAACAAAATTTAGTTGATTGCTCTGGTCCAGAAGAAAA
CTTTGGTTGTGATGGTGGTTTAATGAATAATGCATTTGATTATATCATTAAAAACAAGGG
TATTGACACTGAAAGTAGTTATCCATATACTGCTGAAACTGGTTCAACATGTTTATTCAA
TAAATCTGATATTGGTGCAACCATTAAAGGTTATGTTAACATTACTGCCGGTTCAGAGAT
TTCATTAGAGAATGGTGCTCAACATGGTCCAGTATCTGTTGCAATTGATGCTTCCCATAA
TAGTTTCCAACTCTATACATCTGGTATCTATTATGAGCCAAAATGTTCTCCAACTGAATT
GGATCATGGTGTTTTAGTTGTTGGTTATGGTGTTCAAGGTAAAGATGATGAAGGTCCAGT
ATTAAACAGAAAACAAACCATTGTTATCCACAAGAATGAAGATAATAAAGTTGAATCCTC
TGATGATTCATCTGATAGTGTTAGACCAAAGGCAAATAATTATTGGATCGTTAAAAATTC
ATGGGGTACCTCATGGGGTATAAAAGGTTACATTTTAATGTCAAAGG