NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFI544
Library SF
(Link to library)
Clone ID SFI544
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U08552-1|Contig-U16471-1
Original site URL
Representative seq. ID SFI544P
(Link to Original site)
Representative DNA sequence 
>SFI544 (SFI544Q) /CSM/SF/SFI5-B/SFI544Q.Seq.d/
GGTACAGTTGGAAGAGGTGCAGTTACAACCGCATCTTCTGTAGCTAATACAGTTGGTGAA
TTCCTTGGTGGATCTAGAACTGGTGGTTCCTCATCTGCTGGTACAGTCGGTAACGTAATC
TCTGATTCTTATACATCAATTGGTAAAATTGCATCTGGTAATGGTAATTCCCTTAGTGAG
ACCATTGGTACCACTGGTGATACATTGGCTCATACATTCGCTGGTACAGATTCAGTCGGT
GTAACTGGTTTCCATATAATTACAAAGACTTTTAATTTGATTGCTGGTGGTAAATTTAAC
TCTGATCAACAATACATTGATAAATCCTACGGTTCAATTCCATCACAAGATAATGAAGAA
ATTAAAAAGAGATTACAAAGTGCTCATCAACAATTACAAGAACAATCACCTGCAATCTAT
CAATCAATGAAATCTGAAGATCTAAAAAATTTAGATGATGAAGTAATTCGTAATACTCTT
AAGGAAATGCAAATTCAACGTGAAAATCAAGATATTGGTCAACAAAATCAAGAAGATAAA
GAACAATTAATTGATTTACAAAATAGAGAACCTGGTTTATACAAAAATCAACAAGATCTT
AAACAAGXXXXXXXXXXAANAAATTCGTAAAAGTAATGATNAAATAACAGTTATNAAATT
AGNAACAGAAAATGAAAAAAAAAAACAACAAGAACAACAAGAACAACAAGATAATAAAGA
AGGATATGGTAATGACGATGTTACAGAGATGGTATTATCATCAGTTTTATATGTTTCACA
AAAAGCAATAGCGGGTGCACAATTTGTTGGTAATATTTTTGCAGATATTTTTGGATTTGG
TGAAGGAAAGTATCAATATCACATTGATGAATATAATATGATACAAGAGGAAAAGAAAAG
AAAATTAGCTGAAAAAGCATTAAAAGAATCAAATATGGAATCTCAAACAGAACCAAATAT
AAATAATGTTTCAATTTCAACTGAATCACCAAAAACAACATCACAACAACAACAACAACA
ACAAGAATTATAAATTAAATTATAAATTAAATTATAAATCAAAAAGTGTTTAAAAAAAAT
ATATATATATAAACTATTTAAAATTATAAANATTTCCTTTGTAAAT
sequence update 2001.11.22
Translated Amino Acid sequence 
GTVGRGAVTTASSVANTVGEFLGGSRTGGSSSAGTVGNVISDSYTSIGKIASGNGNSLSE
TIGTTGDTLAHTFAGTDSVGVTGFHIITKTFNLIAGGKFNSDQQYIDKSYGSIPSQDNEE
IKKRLQSAHQQLQEQSPAIYQSMKSEDLKNLDDEVIRNTLKEMQIQRENQDIGQQNQEDK
EQLIDLQNREPGLYKNQQDLKQ---

---XIRKSNDXITVXKLXTENEKKKQQEQQEQQDNKEGYGNDDVTEMVLSSVLYVSQKAI
AGAQFVGNIFADIFGFGEGKYQYHIDEYNMIQEEKKRKLAEKALKESNMESQTEPNINNV
SISTESPKTTSQQQQQQQEL*ikl*ikl*ikkclkkiyiyklfkiixisfvn
Translated Amino Acid sequence (All Frames) 
Frame A:
GTVGRGAVTTASSVANTVGEFLGGSRTGGSSSAGTVGNVISDSYTSIGKIASGNGNSLSE
TIGTTGDTLAHTFAGTDSVGVTGFHIITKTFNLIAGGKFNSDQQYIDKSYGSIPSQDNEE
IKKRLQSAHQQLQEQSPAIYQSMKSEDLKNLDDEVIRNTLKEMQIQRENQDIGQQNQEDK
EQLIDLQNREPGLYKNQQDLKQ---

---xkfvkvmxk*qlxn*xqkmkkknnknnknnkiikkdmvmtmlqrwyyhqfymfhkkq
*rvhnllviflqifldlvkesinitlmnii*ykrkrken*lkkh*knqiwnlkqnqi*im
fqfqlnhqkqhhnnnnnnknyklnyklnyksksv*kkyiyinylkl*xfpl*

Frame B:
vqleevqlqphll*liqlvnslvdlelvvphllvqsvt*slilihqlvklhlvmviplvr
plvplvihwlihslvqiqsv*lvsi*lqrlli*llvvnltlinntlinptvqfhhkimkk
lkrdykvlinnyknnhlqsinq*nlki*ki*mmk*fvillrkckfnvkikilvnkikkik
nn*liykienlvytkinkilnk---

---xns*k**xnnsyxixnrk*kkkttrttrttr**rriw**rcyrdgiiisficftksn
sgcticw*yfcryfwiw*rkvsish**i*ydtrgkekkis*ksikrikygisnrtkyk*c
fnfn*itknnitttttttriin*iin*iinqkvfkkniyi*ti*nykxflck

Frame C:
yswkrcsynrifcs*ysw*ipwwi*nwwflicwysr*rnl*flyinw*nciw*w*fp**d
hwyhw*yigsyirwyrfsrcnwfpynykdf*fdcww*i*l*stih**ilrfnsitr**rn
*keitkcsstitrtitcnlsinei*rskkfr**sns*ys*gnanst*ksrywstksrr*r
tin*ftk*rtwfiqkstrs*t---

---XIRKSNDXITVXKLXTENEKKKQQEQQEQQDNKEGYGNDDVTEMVLSSVLYVSQKAI
AGAQFVGNIFADIFGFGEGKYQYHIDEYNMIQEEKKRKLAEKALKESNMESQTEPNINNV
SISTESPKTTSQQQQQQQEL*ikl*ikl*ikkclkkiyiyklfkiixisfvn
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFI544 (SFI544Q) /CSM/SF/SFI5-B/SFI544Q.Seq.d/                       1612   0.0
AFB429 (AFB429Q) /CSM/AF/AFB4-B/AFB429Q.Seq.d/                       1178   0.0
SFJ694 (SFJ694Q) /CSM/SF/SFJ6-D/SFJ694Q.Seq.d/                       1148   0.0
SFC316 (SFC316Q) /CSM/SF/SFC3-A/SFC316Q.Seq.d/                       1140   0.0
SFH241 (SFH241Q) /CSM/SF/SFH2-B/SFH241Q.Seq.d/                       1124   0.0
AFA655 (AFA655Q) /CSM/AF/AFA6-C/AFA655Q.Seq.d/                       1124   0.0
AFK651 (AFK651Q) /CSM/AF/AFK6-C/AFK651Q.Seq.d/                       1110   0.0
AFC432 (AFC432Q) /CSM/AF/AFC4-B/AFC432Q.Seq.d/                       1108   0.0
AFC592 (AFC592Q) /CSM/AF/AFC5-D/AFC592Q.Seq.d/                       1092   0.0
CFC795 (CFC795Q) /CSM/CF/CFC7-D/CFC795Q.Seq.d/                       1084   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene,complete cds.  1195   0.0    1
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    48   2e-13  21
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.    42   1e-06  12
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    40   9e-06  15
AC019884|AC019884.1 Drosophila melanogaster, *** SEQUENCING IN PROGRESS ***, in ordered pieces.    46   2e-04  4
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    52   3e-04  18
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence.    52   3e-04  12
AC004564|AC004564.1 Drosophila melanogaster DNA sequence (P1 DS08012 (D224)), complete sequence.    46   4e-04  4
AC116920|AC116920.2 Dictyostelium discoideum chromosome 2 map 3879572-4071762 strain AX4, complete sequence.    40   5e-04  12
AC115599|AC115599.2 Dictyostelium discoideum chromosome 2 map 4229098-4354721 strain AX4, complete sequence.    42   0.001  10
dna update 2004. 1. 2
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags...   363   7e-99
CP001279_131(CP001279|pid:none) Nautilia profundicola AmH, compl...    49   4e-04
AF305694_1(AF305694|pid:none) Kaposi's sarcoma-associated herpes...    44   0.013
AF045453_1(AF045453|pid:none) Dictyostelium discoideum protein k...    44   0.013
(Q54QV3) RecName: Full=Probable serine/threonine-protein kinase ...    44   0.013
(Q54VY3) RecName: Full=Putative uncharacterized protein DDB_G028...    43   0.022
AF192756_1(AF192756|pid:none) Kaposi's sarcoma-associated herpes...    42   0.029
AF360120_1(AF360120|pid:none) Human herpesvirus 8 ORF73 gene, co...    42   0.029
AF148805_82(AF148805|pid:none) Human herpesvirus 8 type P isolat...    42   0.038
BT036468_1(BT036468|pid:none) Zea mays full-length cDNA clone ZM...    42   0.050
protein update 2009. 5.26
PSORT 

 psg: 0.88  gvh: 0.47  alm: 0.39  top: 0.40  tms: 0.00  mit: 0.34  mip: 0.05
 nuc: 0.04  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 24.0 %: cytoplasmic
	 20.0 %: mitochondrial
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for SFI544 is nuc
5' end seq. ID SFI544F
5' end seq. 
>SFI544F.Seq
GGTACAGTTGGAAGAGGTGCAGTTACAACCGCATCTTCTGTAGCTAATACAGTTGGTGAA
TTCCTTGGTGGATCTAGAACTGGTGGTTCCTCATCTGCTGGTACAGTCGGTAACGTAATC
TCTGATTCTTATACATCAATTGGTAAAATTGCATCTGGTAATGGTAATTCCCTTAGTGAG
ACCATTGGTACCACTGGTGATACATTGGCTCATACATTCGCTGGTACAGATTCAGTCGGT
GTAACTGGTTTCCATATAATTACAAAGACTTTTAATTTGATTGCTGGTGGTAAATTTAAC
TCTGATCAACAATACATTGATAAATCCTACGGTTCAATTCCATCACAAGATAATGAAGAA
ATTAAAAAGAGATTACAAAGTGCTCATCAACAATTACAAGAACAATCACCTGCAATCTAT
CAATCAATGAAATCTGAAGATCTAAAAAATTTAGATGATGAAGTAATTCGTAATACTCTT
AAGGAAATGCAAATTCAACGTGAAAATCAAGATATTGGTCAACAAAATCAAGAAGATAAA
GAACAATTAATTGATTTACAAAATAGAGAACCTGGTTTATACAAAAATCAACAAGATCTT
AAACAAG----------
Length of 5' end seq. 607
3' end seq. ID SFI544Z
3' end seq. 
>SFI544Z.Seq
NNNNNNNNNNAANAAATTCGTAAAAGTAATGATNAAATAACAGTTATNAAATTAGNAACA
GAAAATGAAAAAAAAAAACAACAAGAACAACAAGAACAACAAGATAATAAAGAAGGATAT
GGTAATGACGATGTTACAGAGATGGTATTATCATCAGTTTTATATGTTTCACAAAAAGCA
ATAGCGGGTGCACAATTTGTTGGTAATATTTTTGCAGATATTTTTGGATTTGGTGAAGGA
AAGTATCAATATCACATTGATGAATATAATATGATACAAGAGGAAAAGAAAAGAAAATTA
GCTGAAAAAGCATTAAAAGAATCAAATATGGAATCTCAAACAGAACCAAATATAAATAAT
GTTTCAATTTCAACTGAATCACCAAAAACAACATCACAACAACAACAACAACAACAAGAA
TTATAAATTAAATTATAAATTAAATTATAAATCAAAAAGTGTTTAAAAAAAATATATATA
TATAAACTATTTAAAATTATAAANATTTCCTTTGTAAAT
Length of 3' end seq. 519
Connected seq. ID SFI544P
Connected seq. 
>SFI544P.Seq
GGTACAGTTGGAAGAGGTGCAGTTACAACCGCATCTTCTGTAGCTAATACAGTTGGTGAA
TTCCTTGGTGGATCTAGAACTGGTGGTTCCTCATCTGCTGGTACAGTCGGTAACGTAATC
TCTGATTCTTATACATCAATTGGTAAAATTGCATCTGGTAATGGTAATTCCCTTAGTGAG
ACCATTGGTACCACTGGTGATACATTGGCTCATACATTCGCTGGTACAGATTCAGTCGGT
GTAACTGGTTTCCATATAATTACAAAGACTTTTAATTTGATTGCTGGTGGTAAATTTAAC
TCTGATCAACAATACATTGATAAATCCTACGGTTCAATTCCATCACAAGATAATGAAGAA
ATTAAAAAGAGATTACAAAGTGCTCATCAACAATTACAAGAACAATCACCTGCAATCTAT
CAATCAATGAAATCTGAAGATCTAAAAAATTTAGATGATGAAGTAATTCGTAATACTCTT
AAGGAAATGCAAATTCAACGTGAAAATCAAGATATTGGTCAACAAAATCAAGAAGATAAA
GAACAATTAATTGATTTACAAAATAGAGAACCTGGTTTATACAAAAATCAACAAGATCTT
AAACAAG----------AANAAATTCGTAAAAGTAATGATNAAATAACAGTTATNAAATT
AGNAACAGAAAATGAAAAAAAAAAACAACAAGAACAACAAGAACAACAAGATAATAAAGA
AGGATATGGTAATGACGATGTTACAGAGATGGTATTATCATCAGTTTTATATGTTTCACA
AAAAGCAATAGCGGGTGCACAATTTGTTGGTAATATTTTTGCAGATATTTTTGGATTTGG
TGAAGGAAAGTATCAATATCACATTGATGAATATAATATGATACAAGAGGAAAAGAAAAG
AAAATTAGCTGAAAAAGCATTAAAAGAATCAAATATGGAATCTCAAACAGAACCAAATAT
AAATAATGTTTCAATTTCAACTGAATCACCAAAAACAACATCACAACAACAACAACAACA
ACAAGAATTATAAATTAAATTATAAATTAAATTATAAATCAAAAAGTGTTTAAAAAAAAT
ATATATATATAAACTATTTAAAATTATAAANATTTCCTTTGTAAAT
Length of connected seq. 1116
Full length Seq ID -
Full length Seq. -
Length of full length seq. -