>SFI542 (SFI542Q) /CSM/SF/SFI5-B/SFI542Q.Seq.d/
XXXXXXXXXXCTGGTTCATTAGAAGGTACCAACTGTGTCACCAACGGTGAATTAGTCTCC
CTCTCTGAACAACAATTAGTTGATTGTGCTATCCTTACCGGTAGTCAAGGTTGTGGTGGT
GGTTTTGCATCATCTGCATTCCAATACGTCATGGAAATTGGTAGTCTCGCCACCGAGTCC
AACTATCCATACTTAATGCAAAATGGTCTCTGCAGAGATAGAACTGTCACTCCATCAGGT
GTTTCAATCACTGGTTACGTCAATGTTACCTCTGGTAGTGAATCTGCCCTTCAAAACGCT
ATCGCCACCACTGGTCCAGTCGCCATCGCCATCGATGCCTCTGTTGATGATTTCCGTTAC
TACATGTCTGGTGTTTACAATAATCCAGCCTGTAAAAATGGTTTAGATGATTTGGATCAC
GAAGTTTTAGCTATTGGTTATGGTACTTATCAAGGTCAAGATTATTTCTTAGTTAAAAAC
TCTTGGTCAACTAACTGGGGTATGGATGGTCTATGNTTACATGGCT

---GSLEGTNCVTNGELVSLSEQQLVDCAILTGSQGCGGGFASSAFQYVMEIGSLATESN
YPYLMQNGLCRDRTVTPSGVSITGYVNVTSGSESALQNAIATTGPVAIAIDASVDDFRYY
MSGVYNNPACKNGLDDLDHEVLAIGYGTYQGQDYFLVKNSWSTNWGMDGLXLHG

Frame A:
---wfirryqlchqr*islpl*ttis*lcypyr*srlwwwfciicipirhgnw*srhrvq
lsilnakwslqr*nchsircfnhwlrqcylw**icpskryrhhwssrhrhrclc**fpll
hvwclq*ssl*kwfr*fgsrsfsywlwylsrsrlfls*kllvn*lgygwsmxtw


Frame B:
---GSLEGTNCVTNGELVSLSEQQLVDCAILTGSQGCGGGFASSAFQYVMEIGSLATESN
YPYLMQNGLCRDRTVTPSGVSITGYVNVTSGSESALQNAIATTGPVAIAIDASVDDFRYY
MSGVYNNPACKNGLDDLDHEVLAIGYGTYQGQDYFLVKNSWSTNWGMDGLXLHG


Frame C:
---vh*kvptvsptvn*spslnnn*livlslpvvkvvvvvlhhlhsntswklvvsppspt
iht*ckmvsaeielslhqvfqslvtsmlplvvnlpfktlspplvqspspsmpllmisvtt
clvftiiqpvkmv*miwitkf*llvmvlikvkiis*lktlgqltgvwmvyxyma

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFI542 (SFI542Q) /CSM/SF/SFI5-B/SFI542Q.Seq.d/                       1017   0.0
VFO640 (VFO640Q) /CSM/VF/VFO6-B/VFO640Q.Seq.d/                       1001   0.0
VFO148 (VFO148Q) /CSM/VF/VFO1-B/VFO148Q.Seq.d/                       1001   0.0
VFM638 (VFM638Q) /CSM/VF/VFM6-B/VFM638Q.Seq.d/                       1001   0.0
VFI581 (VFI581Q) /CSM/VF/VFI5-D/VFI581Q.Seq.d/                       1001   0.0
VFH711 (VFH711Q) /CSM/VF/VFH7-A/VFH711Q.Seq.d/                       1001   0.0
VFG444 (VFG444Q) /CSM/VF/VFG4-B/VFG444Q.Seq.d/                       1001   0.0
VFB191 (VFB191Q) /CSM/VF/VFB1-D/VFB191Q.Seq.d/                       1001   0.0
VFB166 (VFB166Q) /CSM/VF/VFB1-C/VFB166Q.Seq.d/                       1001   0.0
SFL481 (SFL481Q) /CSM/SF/SFL4-D/SFL481Q.Seq.d/                       1001   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AZ674505|AZ674505.1 ENTIZ88TF Entamoeba histolytica Sheared DNA Entamoeba histolyticagenomic, genomic survey sequence.    54   0.002  1
M27307|M27307.1 Entamoeba histolytica cysteine protease gene, partial cds.    54   0.002  1
X87214|X87214.1 E.histolytica mRNA for cysteine proteinase.        54   0.002  1
X87213|X87213.1 E.dispar mRNA for cysteine proteinase.             54   0.002  1
AZ547119|AZ547119.1 ENTFS26TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    54   0.002  1
S58669|S58669.1 Entamoeba histolytica cysteine proteinase precursor (ACP1) gene, partial cds.    54   0.002  1
AF326781|AF326781.1 Triticum monococcum actin (ACT-1) gene, partial cds; putative chromosome condensation factor (CCF), putative resistance protein (RGA-2), putative resistance protein (RGA2) and putative nodulin-like-like protein (NLL) gene, complete cds; and retrotransposons Josephine, Angela-2, Angela-4, Heidi, Greti, Angela-3, Fatima, Erika-1, Angela-6, Angela-5, Barbara, Isabelle, Erika-2, and Claudia.    40   0.051  2
AY188332|AY188332.1 Triticum monococcum chromosome 5AL clone BAC 609E6, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces.    40   0.092  2
AY063763|AY063763.1 Plasmodium berghei berghepain-2 mRNA, complete cds.    48   0.12   1
BM162482|BM162482.1 EST565005 PyBS Plasmodium yoelii yoelii cDNA clone PYCKT14 5' end, mRNA sequence.    48   0.12   1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC075887_1(BC075887|pid:none) Danio rerio cathepsin L.1, mRNA (c...   177   1e-43
AY220615_1(AY220615|pid:none) Hydra vulgaris cathepsin L precurs...   167   2e-40
DQ474246_1(DQ474246|pid:none) Lygus lineolaris cathepsin-L mRNA,...   166   2e-40
AF194426_1(AF194426|pid:none) Myxine glutinosa clone hicl20 cyst...   163   3e-39
DQ280314_1(DQ280314|pid:none) Hymeniacidon perlevis cathepsin L ...   163   3e-39
AF147207_1(AF147207|pid:none) Artemia franciscana cathepsin L-li...   163   3e-39
AY363263_1(AY363263|pid:none) Triatoma infestans cathepsin L-lik...   163   3e-39
AY795054_1(AY795054|pid:none) Artemia franciscana cathepsin L pr...   163   3e-39
AF542132_1(AF542132|pid:none) Theromyzon tessulatum cathepsin L ...   162   3e-39
EF070511_1(EF070511|pid:none) Maconellicoccus hirsutus clone WHM...   162   5e-39

 psg: 0.75  gvh: 0.59  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.15  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.50
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 28.0 %: nuclear
	 12.0 %: Golgi
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system

>> prediction for SFI542 is cyt

>SFI542Z.Seq
NNNNNNNNNNCTGGTTCATTAGAAGGTACCAACTGTGTCACCAACGGTGAATTAGTCTCC
CTCTCTGAACAACAATTAGTTGATTGTGCTATCCTTACCGGTAGTCAAGGTTGTGGTGGT
GGTTTTGCATCATCTGCATTCCAATACGTCATGGAAATTGGTAGTCTCGCCACCGAGTCC
AACTATCCATACTTAATGCAAAATGGTCTCTGCAGAGATAGAACTGTCACTCCATCAGGT
GTTTCAATCACTGGTTACGTCAATGTTACCTCTGGTAGTGAATCTGCCCTTCAAAACGCT
ATCGCCACCACTGGTCCAGTCGCCATCGCCATCGATGCCTCTGTTGATGATTTCCGTTAC
TACATGTCTGGTGTTTACAATAATCCAGCCTGTAAAAATGGTTTAGATGATTTGGATCAC
GAAGTTTTAGCTATTGGTTATGGTACTTATCAAGGTCAAGATTATTTCTTAGTTAAAAAC
TCTTGGTCAACTAACTGGGGTATGGATGGTCTATGNTTACATGGCT