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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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SFI451
Library SF
(Link to library)
Clone ID SFI451
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16381-1
Original site URL
Representative seq. ID SFI451P
(Link to Original site)
Representative DNA sequence 
>SFI451 (SFI451Q) /CSM/SF/SFI4-C/SFI451Q.Seq.d/
ATTGTAGTATTTTGTTCATATTCAAANTAAATATCAATACAATTAANAAAAGTTAAAATT
AAATTTGTAAAATCAATTTGTAACAAAAACTAGTAATTTANAAAAAAAAAAACCAAAAAA
AAAAXXXXXXXXXXAATGNCCAAATTTCCATANATGNGTTNAAAAANGTGGNGGNATNTT
AANNTGNGAATTTNATCCCCCNANACAANCNANATCCCTTGATTGGGCTGAAAATGAAAA
T
sequence update 2001.11.22
Translated Amino Acid sequence 
l*yfvhiqxkyqyn*xklklnl*NQFVTKTSNLXKKKPKKK---

---XPNFHXXVXKXGGXLXXEFXPPXQXXSLDWAENEN
Translated Amino Acid sequence (All Frames) 
Frame A:
ivvfcsysx*isiqlxkvkikfvksicnkn**fxkkktkkk---

---nxqisixxxkxvxxx*xxnxipxxxxxpliglkmk

Frame B:
l*yfvhiqxkyqyn*xklklnl*NQFVTKTSNLXKKKPKKK---

---mxkfpxmxxkxwxxxxxxixspxtxxip*lg*k*k

Frame C:
csilfifkxnintixks*n*ickinl*qklvixkkknqkk---

---XPNFHXXVXKXGGXLXXEFXPPXQXXSLDWAENEN
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLF502 (SLF502Q) /CSM/SL/SLF5-A/SLF502Q.Seq.d/                        151   6e-36
SLF326 (SLF326Q) /CSM/SL/SLF3-B/SLF326Q.Seq.d/                        151   6e-36
SHF559 (SHF559Q) /CSM/SH/SHF5-C/SHF559Q.Seq.d/                        151   6e-36
SHA894 (SHA894Q) /CSM/SH/SHA8-D/SHA894Q.Seq.d/                        151   6e-36
SHA483 (SHA483Q) /CSM/SH/SHA4-D/SHA483Q.Seq.d/                        151   6e-36
SFK778 (SFK778Q) /CSM/SF/SFK7-D/SFK778Q.Seq.d/                        151   6e-36
SFK753 (SFK753Q) /CSM/SF/SFK7-C/SFK753Q.Seq.d/                        151   6e-36
SFK673 (SFK673Q) /CSM/SF/SFK6-D/SFK673Q.Seq.d/                        151   6e-36
SFK593 (SFK593Q) /CSM/SF/SFK5-D/SFK593Q.Seq.d/                        151   6e-36
SFK451 (SFK451Q) /CSM/SF/SFK4-C/SFK451Q.Seq.d/                        151   6e-36
own update 2002.12. 2
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

X51892|X51892.1 Dictyostelium discoideum SP60 gene for spore coat protein.    88   2e-48  3
AC115685|AC115685.1 Dictyostelium discoideum chromosome 2 map 4718821-4752388 strain AX4, complete sequence.    88   4e-48  5
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence.    88   8e-44  6
M26239|M26239.1 D.discoideum spore coat protein SP60 gene, complete cds.    88   5e-31  2
X52105|X52105.1 Dictyostelium discoideum SP60 gene for spore coat protein.    82   8e-27  2
M34546|M34546.1 D.discoideum spore coat 60 (sp60) gene, 5' flank.    82   4e-12  1
AC019267|AC019267.3 Homo sapiens clone RP11-7M4, LOW-PASS SEQUENCE SAMPLING.    46   0.21   1
AC110577|AC110577.6 Mus musculus clone RP23-329N11, WORKING DRAFT SEQUENCE, 13 ordered pieces.    42   0.49   2
BX323068|BX323068.5 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    32   0.59   5
BX322622|BX322622.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    36   0.69   4
dna update 2004. 1. 2
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P15270) RecName: Full=Spore coat protein SP60; Flags: Precursor...    49   7e-05
protein update 2009. 1.12
PSORT 

 psg: 0.48  gvh: 0.52  alm: 0.62  top: 0.53  tms: 0.00  mit: 0.32  mip: 0.00
 nuc: 0.18  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: nuclear
	 20.0 %: mitochondrial
	 20.0 %: cytoplasmic
	  4.0 %: vesicles of secretory system

>> prediction for SFI451 is nuc
5' end seq. ID SFI451F
5' end seq. 
>SFI451F.Seq
ATTGTAGTATTTTGTTCATATTCAAANTAAATATCAATACAATTAANAAAAGTTAAAATT
AAATTTGTAAAATCAATTTGTAACAAAAACTAGTAATTTANAAAAAAAAAAACCAAAAAA
AAAA----------
Length of 5' end seq. 124
3' end seq. ID SFI451Z
3' end seq. 
>SFI451Z.Seq
NNNNNNNNNNAATGNCCAAATTTCCATANATGNGTTNAAAAANGTGGNGGNATNTTAANN
TGNGAATTTNATCCCCCNANACAANCNANATCCCTTGATTGGGCTGAAAATGAAAAT
Length of 3' end seq. 117
Connected seq. ID SFI451P
Connected seq. 
>SFI451P.Seq
ATTGTAGTATTTTGTTCATATTCAAANTAAATATCAATACAATTAANAAAAGTTAAAATT
AAATTTGTAAAATCAATTTGTAACAAAAACTAGTAATTTANAAAAAAAAAAACCAAAAAA
AAAA----------AATGNCCAAATTTCCATANATGNGTTNAAAAANGTGGNGGNATNTT
AANNTGNGAATTTNATCCCCCNANACAANCNANATCCCTTGATTGGGCTGAAAATGAAAA
T
Length of connected seq. 231
Full length Seq ID -
Full length Seq. -
Length of full length seq. -