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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFI393
Library SF
(Link to library)
Clone ID SFI393
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16243-1
Original site URL
Representative seq. ID SFI393P
(Link to Original site)
Representative DNA sequence 
>SFI393 (SFI393Q) /CSM/SF/SFI3-D/SFI393Q.Seq.d/
TTCAAGNAATTGAAACTATTTCTCGTCACTTAAGCACTGGNACCAATTTTAGAATCAAAT
CCAACTTCTGGATCAGTTAAATCAGGAGATGATATTGTAATTGTTGCACCATTTCGTACA
GCAATTTGTAAAGCTAAAAGAGGAGCATTCAAAGAGACAGCACCAGATGATTTATTAGCA
CCAGTTATTAAACATATTATCAAAGTTACCAAATTAGATCCAAAATTAATTGGAGATGTT
GTTATGGGAGCAGTATTACCAAGATCATCACAAGGTGCAACCGAAGTTAGAGTTGCCACA
TTATTAGCAGGTTTACCAAAGGAAGTACCATGTTATACAGTCAACAGACAATGTTCATCA
GGTTTACAAGCAATTGCCAATTGTGCAGCAGCAGTCAAAGCAGGTTTCTATGACATTGGT
TTAGCAGGCGGTGTAGAATCAATGAGTTTAAATCCAATGGCATGGGATGGTGGTTTCAAC
GAGGTTGCCCAAGAGGATCCAATCATTAGTGGXXXXXXXXXXAATGTCGCAGAGCGTTTT
GGTGTCACCAGAAAAGACCAAGATGAATTCTCTGTAAATTCACACAAGAAGGCAGGTGCC
GCCCAAAAAGCAGGTAAATTTGACGATGAAATCGTTCCAGTCACCGTAAAGACCGAGGAT
GGCAAAACCATCGTCGTCGATAAAGACGAAGGTATCCGTGAGAAAACCACCGTTGCAGAT
TTGGCCAAATTAAAACCAGCTTTCAAAGAGGGTGGTACAACCACCGCTGGTAACTCTAGT
CAGATGAGTGATGGTGCCGCCGCTTGTTTAGTTATGAAAAGAAGTACCGCCGAAAGATTG
GGTCTCAAGGTTGAATTGGTTTTCGTAGCTTTTGCTGCTGTCGGTGTCGAACCATCCATT
ATGGGTATTGGTCCAGCCGTTGCAATTCCAGCCGCCTTAAAACAAGCTGGTCTCACCACT
AAAGATATCGACGTTTTTGAAATCAATGAAGCTTTTGCTTCTCAAGCATTTTACAGTTGT
AAGGTTTTGGGTTTGGATATGAACAAAGTTAATCCAAATGGCTCTGGTATCGCTTTAGGT
CATCCATTAGGTGCTACTGGTGCCCGTCAAATGGCTACCATTTCAAGAGAATTACATCGT
CGTAAAGGTAAATATGGTGTAATCTCTATGTGTAT
sequence update 2001.11.22
Translated Amino Acid sequence 
fkxlklflvt*ALXPILESNPTSGSVKSGDDIVIVAPFRTAICKAKRGAFKETAPDDLLA
PVIKHIIKVTKLDPKLIGDVVMGAVLPRSSQGATEVRVATLLAGLPKEVPCYTVNRQCSS
GLQAIANCAAAVKAGFYDIGLAGGVESMSLNPMAWDGGFNEVAQEDPIIS---

---NVAERFGVTRKDQDEFSVNSHKKAGAAQKAGKFDDEIVPVTVKTEDGKTIVVDKDEG
IREKTTVADLAKLKPAFKEGGTTTAGNSSQMSDGAAACLVMKRSTAERLGLKVELVFVAF
AAVGVEPSIMGIGPAVAIPAALKQAGLTTKDIDVFEINEAFASQAFYSCKVLGLDMNKVN
PNGSGIALGHPLGATGARQMATISRELHRRKGKYGVISMC
Translated Amino Acid sequence (All Frames) 
Frame A:
fkxlklflvt*ALXPILESNPTSGSVKSGDDIVIVAPFRTAICKAKRGAFKETAPDDLLA
PVIKHIIKVTKLDPKLIGDVVMGAVLPRSSQGATEVRVATLLAGLPKEVPCYTVNRQCSS
GLQAIANCAAAVKAGFYDIGLAGGVESMSLNPMAWDGGFNEVAQEDPIIS---

---NVAERFGVTRKDQDEFSVNSHKKAGAAQKAGKFDDEIVPVTVKTEDGKTIVVDKDEG
IREKTTVADLAKLKPAFKEGGTTTAGNSSQMSDGAAACLVMKRSTAERLGLKVELVFVAF
AAVGVEPSIMGIGPAVAIPAALKQAGLTTKDIDVFEINEAFASQAFYSCKVLGLDMNKVN
PNGSGIALGHPLGATGARQMATISRELHRRKGKYGVISMC

Frame B:
sxn*nyfsslkhwxqf*nqiqlldqlnqemil*llhhfvqqfvklkeehskrqhqmiy*h
qllnilsklpn*iqn*lemllweqyyqdhhkvqpklelphy*qvyqrkyhviqstdnvhq
vykqlpivqqqskqvsmtlv*qav*nq*v*iqwhgmvvstrlpkriqslv---

---msqsvlvspektkmnsl*ihtrrqvppkkqvnltmksfqsp*rprmakpsssiktkv
svrkpplqiwpn*nqlskrvvqpplvtlvr*vmvpplv*l*kevppkdwvsrlnwfs*ll
llsvsnhplwvlvqplqfqpp*nklvsplkistflksmkllllkhftvvrfwvwi*tkli
qmalvsl*vih*vllvpvkwlpfqenyivvkvnmv*slcv

Frame C:
qxietisrhlstgtnfriksnfwis*irr*ycncctisysnl*s*krsiqrdstr*fist
sy*tyyqsyqirskinwrccygssitkiitrcnrs*schiisrftkgstmlysqqtmfir
ftsncqlcsssqsrfl*hwfsrrcrinefksngmgwwfqrgcprgsnh*w---

---crrafwchqkrpr*ilckftqegrcrpksr*i*r*nrsshrkdrgwqnhrrr*rrry
p*enhrcrfgqiktsfqrgwynhrw*l*sde*wcrrlfsyekkyrrkigsqg*igfrsfc
ccrcrtihygywssrcnssrlktswshh*ryrrf*nq*sfcfssilql*gfgfgyeqs*s
kwlwyrfrssircywcpsngyhfkritss*r*iwcnlyvy
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFI393 (SFI393Q) /CSM/SF/SFI3-D/SFI393Q.Seq.d/                       2258   0.0
VFE239 (VFE239Q) /CSM/VF/VFE2-B/VFE239Q.Seq.d/                       1287   0.0
SLG762 (SLG762Q) /CSM/SL/SLG7-C/SLG762Q.Seq.d/                       1287   0.0
SFI740 (SFI740Q) /CSM/SF/SFI7-B/SFI740Q.Seq.d/                       1287   0.0
SFH501 (SFH501Q) /CSM/SF/SFH5-A/SFH501Q.Seq.d/                       1287   0.0
SFG758 (SFG758Q) /CSM/SF/SFG7-C/SFG758Q.Seq.d/                       1287   0.0
SFG482 (SFG482Q) /CSM/SF/SFG4-D/SFG482Q.Seq.d/                       1287   0.0
SFB522 (SFB522Q) /CSM/SF/SFB5-A/SFB522Q.Seq.d/                       1287   0.0
SFA524 (SFA524Q) /CSM/SF/SFA5-A/SFA524Q.Seq.d/                       1287   0.0
CHB394 (CHB394Q) /CSM/CH/CHB3-D/CHB394Q.Seq.d/                       1287   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strainAX4, complete sequence.  1287   0.0    2
CA917334|CA917334.1 EST641481 GPOD Medicago truncatula cDNA clone GPOD-35H18, mRNA sequence.    44   6e-18  6
CA858588|CA858588.1 EST635843 GLSD Medicago truncatula cDNA clone pGLSD-38M16, mRNA sequence.    44   3e-14  5
BE239458|BE239458.1 EST403507 MHRP- Medicago truncatula cDNA clone pMHRP-28A16, mRNA sequence.    44   4e-09  4
CB893643|CB893643.1 EST646435 HOGA Medicago truncatula cDNA clone HOGA-28F15, mRNA sequence.    44   5e-09  4
BE941261|BE941261.1 EST420840 MGHG Medicago truncatula cDNA clone pMGHG-3K24, mRNA sequence.    44   5e-09  4
BG453140|BG453140.1 NF092F08LF1F1064 Developing leaf Medicago truncatula cDNA clone NF092F08LF 5', mRNA sequence.    44   6e-09  4
BG587521|BG587521.1 EST489293 MHAM Medicago truncatula/Glomus versiforme mixed EST library cDNA clone pMHAM-50E4 5' end, mRNA sequence.    44   7e-09  4
BG457788|BG457788.1 NF037D02PL1F1014 Phosphate starved leaf Medicago truncatula cDNA clone NF037D02PL 5', mRNA sequence.    44   7e-09  4
BG454722|BG454722.1 NF103H06LF1F1057 Developing leaf Medicago truncatula cDNA clone NF103H06LF 5', mRNA sequence.    44   7e-09  4
dna update 2004. 1. 1
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116986_75(AC116986|pid:none) Dictyostelium discoideum chromoso...   699   0.0
X75329_1(X75329|pid:none) M.indica (Manila) THMF5 mRNA for 3-ket...   402   e-110
AM474896_9(AM474896|pid:none) Vitis vinifera contig VV79X001698....   401   e-110
S57792(S57792)acetyl-CoA C-acyltransferase (EC 2.3.1.16) B precu...   400   e-110
AB333797_1(AB333797|pid:none) Glycine max mRNA for peroxisomal 3...   397   e-109
T07989(T07989) acetyl-CoA C-acyltransferase (EC 2.3.1.16) precur...   396   e-109
BT070433_1(BT070433|pid:none) Picea sitchensis clone WS02729_F15...   396   e-109
EU964831_1(EU964831|pid:none) Zea mays clone 281881 3-ketoacyl-C...   395   e-108
AX025481_1(AX025481|pid:none) Sequence 7 from Patent WO0032789.       395   e-108
BT034496_1(BT034496|pid:none) Zea mays full-length cDNA clone ZM...   395   e-108
protein update 2009. 5.26
PSORT 

 psg: 0.75  gvh: 0.53  alm: 0.28  top: 0.33  tms: 0.07  mit: 0.22  mip: 0.00
 nuc: 0.02  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.04  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: cytoplasmic
	 24.0 %: endoplasmic reticulum
	 20.0 %: nuclear
	 16.0 %: mitochondrial
	  8.0 %: Golgi
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for SFI393 is cyt
5' end seq. ID SFI393F
5' end seq. 
>SFI393F.Seq
TTCAAGNAATTGAAACTATTTCTCGTCACTTAAGCACTGGNACCAATTTTAGAATCAAAT
CCAACTTCTGGATCAGTTAAATCAGGAGATGATATTGTAATTGTTGCACCATTTCGTACA
GCAATTTGTAAAGCTAAAAGAGGAGCATTCAAAGAGACAGCACCAGATGATTTATTAGCA
CCAGTTATTAAACATATTATCAAAGTTACCAAATTAGATCCAAAATTAATTGGAGATGTT
GTTATGGGAGCAGTATTACCAAGATCATCACAAGGTGCAACCGAAGTTAGAGTTGCCACA
TTATTAGCAGGTTTACCAAAGGAAGTACCATGTTATACAGTCAACAGACAATGTTCATCA
GGTTTACAAGCAATTGCCAATTGTGCAGCAGCAGTCAAAGCAGGTTTCTATGACATTGGT
TTAGCAGGCGGTGTAGAATCAATGAGTTTAAATCCAATGGCATGGGATGGTGGTTTCAAC
GAGGTTGCCCAAGAGGATCCAATCATTAGTGG----------
Length of 5' end seq. 512
3' end seq. ID SFI393Z
3' end seq. 
>SFI393Z.Seq
NNNNNNNNNNAATGTCGCAGAGCGTTTTGGTGTCACCAGAAAAGACCAAGATGAATTCTC
TGTAAATTCACACAAGAAGGCAGGTGCCGCCCAAAAAGCAGGTAAATTTGACGATGAAAT
CGTTCCAGTCACCGTAAAGACCGAGGATGGCAAAACCATCGTCGTCGATAAAGACGAAGG
TATCCGTGAGAAAACCACCGTTGCAGATTTGGCCAAATTAAAACCAGCTTTCAAAGAGGG
TGGTACAACCACCGCTGGTAACTCTAGTCAGATGAGTGATGGTGCCGCCGCTTGTTTAGT
TATGAAAAGAAGTACCGCCGAAAGATTGGGTCTCAAGGTTGAATTGGTTTTCGTAGCTTT
TGCTGCTGTCGGTGTCGAACCATCCATTATGGGTATTGGTCCAGCCGTTGCAATTCCAGC
CGCCTTAAAACAAGCTGGTCTCACCACTAAAGATATCGACGTTTTTGAAATCAATGAAGC
TTTTGCTTCTCAAGCATTTTACAGTTGTAAGGTTTTGGGTTTGGATATGAACAAAGTTAA
TCCAAATGGCTCTGGTATCGCTTTAGGTCATCCATTAGGTGCTACTGGTGCCCGTCAAAT
GGCTACCATTTCAAGAGAATTACATCGTCGTAAAGGTAAATATGGTGTAATCTCTATGTG
TAT
Length of 3' end seq. 663
Connected seq. ID SFI393P
Connected seq. 
>SFI393P.Seq
TTCAAGNAATTGAAACTATTTCTCGTCACTTAAGCACTGGNACCAATTTTAGAATCAAAT
CCAACTTCTGGATCAGTTAAATCAGGAGATGATATTGTAATTGTTGCACCATTTCGTACA
GCAATTTGTAAAGCTAAAAGAGGAGCATTCAAAGAGACAGCACCAGATGATTTATTAGCA
CCAGTTATTAAACATATTATCAAAGTTACCAAATTAGATCCAAAATTAATTGGAGATGTT
GTTATGGGAGCAGTATTACCAAGATCATCACAAGGTGCAACCGAAGTTAGAGTTGCCACA
TTATTAGCAGGTTTACCAAAGGAAGTACCATGTTATACAGTCAACAGACAATGTTCATCA
GGTTTACAAGCAATTGCCAATTGTGCAGCAGCAGTCAAAGCAGGTTTCTATGACATTGGT
TTAGCAGGCGGTGTAGAATCAATGAGTTTAAATCCAATGGCATGGGATGGTGGTTTCAAC
GAGGTTGCCCAAGAGGATCCAATCATTAGTGG----------AATGTCGCAGAGCGTTTT
GGTGTCACCAGAAAAGACCAAGATGAATTCTCTGTAAATTCACACAAGAAGGCAGGTGCC
GCCCAAAAAGCAGGTAAATTTGACGATGAAATCGTTCCAGTCACCGTAAAGACCGAGGAT
GGCAAAACCATCGTCGTCGATAAAGACGAAGGTATCCGTGAGAAAACCACCGTTGCAGAT
TTGGCCAAATTAAAACCAGCTTTCAAAGAGGGTGGTACAACCACCGCTGGTAACTCTAGT
CAGATGAGTGATGGTGCCGCCGCTTGTTTAGTTATGAAAAGAAGTACCGCCGAAAGATTG
GGTCTCAAGGTTGAATTGGTTTTCGTAGCTTTTGCTGCTGTCGGTGTCGAACCATCCATT
ATGGGTATTGGTCCAGCCGTTGCAATTCCAGCCGCCTTAAAACAAGCTGGTCTCACCACT
AAAGATATCGACGTTTTTGAAATCAATGAAGCTTTTGCTTCTCAAGCATTTTACAGTTGT
AAGGTTTTGGGTTTGGATATGAACAAAGTTAATCCAAATGGCTCTGGTATCGCTTTAGGT
CATCCATTAGGTGCTACTGGTGCCCGTCAAATGGCTACCATTTCAAGAGAATTACATCGT
CGTAAAGGTAAATATGGTGTAATCTCTATGTGTAT
Length of connected seq. 1165
Full length Seq ID -
Full length Seq. -
Length of full length seq. -