>SFI272 (SFI272Q) /CSM/SF/SFI2-C/SFI272Q.Seq.d/
XXXXXXXXXXCTTGATATACCAATTCATGTCGATGCAGCAAGTGGTGGTTTCGTTGCACC
CTTTCTTCAACCAGAAATTGTTTGGGATTTTAGACTACCACGTGTTAAATCAATTAATGG
CTCTGGTCATAAATTTGGTCTATCTCCATTGGGAGTTGGCTGGGTCGTATGGAGAGGTAA
AAATGACATTCACAAGGATTTGGTATTCGATGTCAACTATCTTGGTGGCAATATGCCAAC
ATTTTCATTGAATTTCTCACGTCCAGGTGGTCAAATAGTATGCCAGTACTATAACTTTTT
GCGCCATGGTCGTAGTGGATATACCGCAGTTCATCAAGCTTGTCTAGATCATGGTATTTT
CATTTCCAAGCAAGTTAAAAAACACGGTATTTTTGATATTGTTTATGATGGTACTGGTGC
ACTTCCAGGTGCATGTTGGAAATTGAAAAAAGATGCAAAAGTAAAATTCAATCTCTTTGA
CCTTTCAGATAGAATGAGAAATAGAGGTTGGCAAATTGCATCCTATACTCTACCAAACTT
ACCAGATATTGTAGTTCT

---DIPIHVDAASGGFVAPFLQPEIVWDFRLPRVKSINGSGHKFGLSPLGVGWVVWRGKN
DIHKDLVFDVNYLGGNMPTFSLNFSRPGGQIVCQYYNFLRHGRSGYTAVHQACLDHGIFI
SKQVKKHGIFDIVYDGTGALPGACWKLKKDAKVKFNLFDLSDRMRNRGWQIASYTLPNLP
DIVV

Frame A:
---liyqfmsmqqvvvslhpffnqklfgildyhvlnqlmalvinlvylhwelagsygevk
mtftriwysmstilvaicqhfh*ishvqvvk*yastitfcamvvvdipqfiklv*imvfs
fpsklkntvflilfmmvlvhfqvhvgn*kkmqk*nsisltfqie*eievgklhpilyqty
qil*f


Frame B:
---*ytnscrcskwwfrctlsstrnclgf*tttc*in*wlws*iwsisigswlgrmer*k
*hsqgfgircqlswwqyanifiefltsrwsnsmpvl*lfapws*wiyrsssslsrswyfh
fqas*ktryf*ycl*wywctsrcmleiekrckskiqsl*pfr*nek*rlancilystklt
rycss


Frame C:
---DIPIHVDAASGGFVAPFLQPEIVWDFRLPRVKSINGSGHKFGLSPLGVGWVVWRGKN
DIHKDLVFDVNYLGGNMPTFSLNFSRPGGQIVCQYYNFLRHGRSGYTAVHQACLDHGIFI
SKQVKKHGIFDIVYDGTGALPGACWKLKKDAKVKFNLFDLSDRMRNRGWQIASYTLPNLP
DIVV

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFI272 (SFI272Q) /CSM/SF/SFI2-C/SFI272Q.Seq.d/                       1086   0.0
SLB722 (SLB722Q) /CSM/SL/SLB7-A/SLB722Q.Seq.d/                       1084   0.0
SFL288 (SFL288Q) /CSM/SF/SFL2-D/SFL288Q.Seq.d/                       1084   0.0
SFK692 (SFK692Q) /CSM/SF/SFK6-D/SFK692Q.Seq.d/                       1084   0.0
SFK622 (SFK622Q) /CSM/SF/SFK6-A/SFK622Q.Seq.d/                       1084   0.0
SFI324 (SFI324Q) /CSM/SF/SFI3-A/SFI324Q.Seq.d/                       1084   0.0
SFH461 (SFH461Q) /CSM/SF/SFH4-C/SFH461Q.Seq.d/                       1084   0.0
SFH381 (SFH381Q) /CSM/SF/SFH3-D/SFH381Q.Seq.d/                       1084   0.0
SFH378 (SFH378Q) /CSM/SF/SFH3-D/SFH378Q.Seq.d/                       1084   0.0
SFG840 (SFG840Q) /CSM/SF/SFG8-B/SFG840Q.Seq.d/                       1084   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BG138757|BG138757.1 EST479199 wild tomato pollen Lycopersicon pennellii cDNA clone cLPP11A1 5' sequence, mRNA sequence.    66   8e-10  2
CF811515|CF811515.1 NA716 cDNA non acclimated Bluecrop library Vaccinium corymbosum cDNA 5', mRNA sequence.    70   5e-09  2
AF352732|AF352732.1 Nicotiana tabacum glutamate decarboxylase isozyme 3 mRNA, complete cds.    58   2e-07  2
CK273593|CK273593.1 EST719671 potato abiotic stress cDNA library Solanum tuberosum cDNA clone POADC22 5' end, mRNA sequence.    50   2e-07  2
CD008053|CD008053.1 VVB082D05_335234 An expressed sequence tag database for abiotic stressed leaves of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVB082D05 5, mRNA sequence.    64   3e-07  2
CD006712|CD006712.1 VVB066D06_332552 An expressed sequence tag database for abiotic stressed leaves of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVB066D06 5, mRNA sequence.    64   3e-07  2
CD719214|CD719214.1 VVB158G03_410335 An expressed sequence tag database for abiotic stressed leaves of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVB158G03 5, mRNA sequence.    64   4e-07  2
CA813481|CA813481.1 CA48LN10IF-E8 Cabernet Sauvignon Leaf - CA48LN Vitis vinifera cDNA clone CA48LN10IF-E8 5', mRNA sequence.    64   4e-07  2
CB341828|CB341828.2 CA32EN0002_IIIbF_E01 Cabernet Sauvignon Leaf - CA32EN Vitis vinifera cDNA clone CA32EN0002_IIIbF_E01 5', mRNA sequence.    64   4e-07  2
AW622257|AW622257.1 EST313055 tomato root during/after fruit set, Cornell University Lycopersicon esculentum cDNA clone cLEX14P1 5', mRNA sequence.    66   5e-07  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FM178379_1197(FM178379|pid:none) Aliivibrio salmonicida LFI1238 ...   275   4e-73
CP000020_1061(CP000020|pid:none) Vibrio fischeri ES114 chromosom...   272   4e-72
CP000789_2953(CP000789|pid:none) Vibrio harveyi ATCC BAA-1116 ch...   268   5e-71
CP001358_45(CP001358|pid:none) Desulfovibrio desulfuricans subsp...   266   2e-70
CP000851_2941(CP000851|pid:none) Shewanella pealeana ATCC 700345...   266   3e-70
CR522870_385(CR522870|pid:none) Desulfotalea psychrophila LSv54 ...   257   1e-67
CP000439_1647(CP000439|pid:none) Francisella tularensis subsp. n...   251   9e-66
AM942759_1390(AM942759|pid:none) Proteus mirabilis strain HI4320...   249   3e-65
CP000608_56(CP000608|pid:none) Francisella tularensis subsp. tul...   248   7e-65
AJ749949_1722(AJ749949|pid:none) Francisella tularensis subsp. t...   245   6e-64

 psg: 0.75  gvh: 0.40  alm: 0.41  top: 0.53  tms: 0.00  mit: 0.06  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 40.0 %: cytoplasmic
	  8.0 %: vacuolar
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial

>> prediction for SFI272 is nuc

>SFI272Z.Seq
NNNNNNNNNNCTTGATATACCAATTCATGTCGATGCAGCAAGTGGTGGTTTCGTTGCACC
CTTTCTTCAACCAGAAATTGTTTGGGATTTTAGACTACCACGTGTTAAATCAATTAATGG
CTCTGGTCATAAATTTGGTCTATCTCCATTGGGAGTTGGCTGGGTCGTATGGAGAGGTAA
AAATGACATTCACAAGGATTTGGTATTCGATGTCAACTATCTTGGTGGCAATATGCCAAC
ATTTTCATTGAATTTCTCACGTCCAGGTGGTCAAATAGTATGCCAGTACTATAACTTTTT
GCGCCATGGTCGTAGTGGATATACCGCAGTTCATCAAGCTTGTCTAGATCATGGTATTTT
CATTTCCAAGCAAGTTAAAAAACACGGTATTTTTGATATTGTTTATGATGGTACTGGTGC
ACTTCCAGGTGCATGTTGGAAATTGAAAAAAGATGCAAAAGTAAAATTCAATCTCTTTGA
CCTTTCAGATAGAATGAGAAATAGAGGTTGGCAAATTGCATCCTATACTCTACCAAACTT
ACCAGATATTGTAGTTCT