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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFI265
Library SF
(Link to library)
Clone ID SFI265
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15579-1
Original site URL
Representative seq. ID SFI265P
(Link to Original site)
Representative DNA sequence 
>SFI265 (SFI265Q) /CSM/SF/SFI2-C/SFI265Q.Seq.d/
CTGTTGGCCTACTGGNATTATTTATATATTTATAGTAACATTATATGAATATTTAAAAAT
TGGAAAACATTTTTTAAAAATTGGAAAACATTATTAAAAAAAGAAATAAATTGATTTTTA
ATTATAAAAAAAAAAXXXXXXXXXXTTAGTANAATCTTGTGAAATAGGTTTTGGTTGTCT
TGCAATTCCAAAAAATTGTAATGATAATGATCCATGTACCACTGATCATTGTGATCCAGC
TATAGGTTGTTATTATGATAAGTTTGATAATTGTGATGCATGTAATGCTGTAGATACTTG
TATTACAAATGATTTATGCTTCCCAAGGGAATGTAATCCAAGAGGGAACCCACCTTGTTT
AATAAACCCTATTAATTGTACAAGCACTGATCCATGCATTTTTTCATATTGTGAAAATGG
TGTATGTATTCCAACATACATTTGTACTCCAACTCCATCTGTAACTCCAACTGTTACCCC
AACTGTTACTCCAACTGTTACCCCAACTGTTACACCAACCGTTACTCCAACCGTTACCCC
AACTCCAACTACAACTCCAACTCCATCACCAACCACTGTCCCACCAAGACCAACCCCAAC
TCC
sequence update 2001.11.22
Translated Amino Acid sequence 
vgllxlfiyl**hymni*klenif*KLENIIKKRNKLIFNYKKK---

---LVXSCEIGFGCLAIPKNCNDNDPCTTDHCDPAIGCYYDKFDNCDACNAVDTCITNDL
CFPRECNPRGNPPCLINPINCTSTDPCIFSYCENGVCIPTYICTPTPSVTPTVTPTVTPT
VTPTVTPTVTPTVTPTPTTTPTPSPTTVPPRPTPT
Translated Amino Acid sequence (All Frames) 
Frame A:
llaywxylyiysnii*ifknwktffknwktllkkein*fliikkk---

---LVXSCEIGFGCLAIPKNCNDNDPCTTDHCDPAIGCYYDKFDNCDACNAVDTCITNDL
CFPRECNPRGNPPCLINPINCTSTDPCIFSYCENGVCIPTYICTPTPSVTPTVTPTVTPT
VTPTVTPTVTPTVTPTPTTTPTPSPTTVPPRPTPT

Frame B:
cwptgiiyifivtlyeylkigkhflkigkhy*kkk*idf*l*kk---

---*xnlvk*vlvvlqfqkivmimihvpliiviql*vvimisliivmhvml*ilvlqmiy
asqgnviqegthlv**tllivqalihaffhivkmvyvfqhtfvlqlhl*lqllpqlllql
lpqllhqpllqplpqlqlqlqlhhqplshqdqpql

Frame C:
vgllxlfiyl**hymni*klenif*KLENIIKKRNKLIFNYKKK---

---sxil*nrfwlscnskkl****smyh*sl*ssyrlll**v**l*cm*ccrylyyk*fm
lpkgm*skreptlfnkpy*lykh*smhffil*kwcmysnihlysnsicnsncypncysnc
ypncytnrysnrypnsnynsnsitnhcptktnpns
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFI265 (SFI265Q) /CSM/SF/SFI2-C/SFI265Q.Seq.d/                        902   0.0
CHD753 (CHD753Q) /CSM/CH/CHD7-C/CHD753Q.Seq.d/                        902   0.0
AFJ801 (AFJ801Q) /CSM/AF/AFJ8-A/AFJ801Q.Seq.d/                        902   0.0
CHB694 (CHB694Q) /CSM/CH/CHB6-D/CHB694Q.Seq.d/                        894   0.0
CHB865 (CHB865Q) /CSM/CH/CHB8-C/CHB865Q.Seq.d/                        888   0.0
CFC681 (CFC681Q) /CSM/CF/CFC6-D/CFC681Q.Seq.d/                        876   0.0
CFF487 (CFF487Q) /CSM/CF/CFF4-D/CFF487Q.Seq.d/                        854   0.0
CHH341 (CHH341Q) /CSM/CH/CHH3-B/CHH341Q.Seq.d/                        839   0.0
CHC630 (CHC630Q) /CSM/CH/CHC6-B/CHC630Q.Seq.d/                        837   0.0
CFB225 (CFB225Q) /CSM/CF/CFB2-B/CFB225Q.Seq.d/                        829   0.0
own update 2002.10.11
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    38   5e-07  13
CK261949|CK261949.1 EST708027 potato abiotic stress cDNA library Solanum tuberosum cDNA clone POABD21 5' end, mRNA sequence.    40   3e-06  3
AC124744|AC124744.1 Mus musculus chromosome UNK clone RP23-223E16, WORKING DRAFT SEQUENCE, 5 unordered pieces.    54   5e-06  6
AC125190|AC125190.2 Mus musculus chromosome UNK clone RP23-288O24, WORKING DRAFT SEQUENCE, 3 unordered pieces.    54   6e-05  3
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    38   2e-04  11
X16057|X16057.1 Dictyostelium discoideum DNA for cyclic nucleotide phosphodiesterase inhibitor.    56   6e-04  1
AE014824|AE014824.1 Plasmodium falciparum 3D7 chromosome 14 section 9 of 13 of the complete sequence.    38   8e-04  8
AL049184|AL049184.5 Plasmodium falciparum DNA *** SEQUENCING IN PROGRESS *** from  MAL13P3.    34   0.001  10
M20909|M20909.1 Dictyostelium discoideum pre-spore-specific cell surface glycoprotein PsA (D19) mRNA, complete cds.    46   0.001  2
AC004710|AC004710.3 Plasmodium falciparum chromosome 12, WORKING DRAFT SEQUENCE, 2 unordered pieces.    36   0.001  6
dna update 2003.12.18
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54FD8) RecName: Full=Protein psiD; Flags: Precursor;                235   6e-61
(Q1ZXC5) RecName: Full=Protein psiC; Flags: Precursor;                 96   1e-18
(Q54C31) RecName: Full=Protein psiR; Flags: Precursor;                 73   7e-12
(Q54C32) RecName: Full=Protein psiQ; Flags: Precursor;                 69   7e-11
(Q54G85) RecName: Full=Protein psiJ; Flags: Precursor;                 65   1e-09
AC117072_61(AC117072|pid:none) Dictyostelium discoideum chromoso...    65   2e-09
S44208(S44208) extracellular matrix protein B - Dictyostelium mi...    60   4e-08
(Q54CH8) RecName: Full=Protein psiN; Flags: Precursor;                 60   6e-08
AC116984_103(AC116984|pid:none) Dictyostelium discoideum chromos...    57   3e-07
(P11976) RecName: Full=Prestalk protein; AltName: Full=Extracell...    56   6e-07
protein update 2009. 5.26
PSORT 

 psg: 0.52  gvh: 0.57  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.30  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: cytoplasmic
	 28.0 %: nuclear
	 24.0 %: mitochondrial
	  8.0 %: vesicles of secretory system
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for SFI265 is cyt
5' end seq. ID SFI265F
5' end seq. 
>SFI265F.Seq
CTGTTGGCCTACTGGNATTATTTATATATTTATAGTAACATTATATGAATATTTAAAAAT
TGGAAAACATTTTTTAAAAATTGGAAAACATTATTAAAAAAAGAAATAAATTGATTTTTA
ATTATAAAAAAAAAA----------
Length of 5' end seq. 135
3' end seq. ID SFI265Z
3' end seq. 
>SFI265Z.Seq
NNNNNNNNNNTTAGTANAATCTTGTGAAATAGGTTTTGGTTGTCTTGCAATTCCAAAAAA
TTGTAATGATAATGATCCATGTACCACTGATCATTGTGATCCAGCTATAGGTTGTTATTA
TGATAAGTTTGATAATTGTGATGCATGTAATGCTGTAGATACTTGTATTACAAATGATTT
ATGCTTCCCAAGGGAATGTAATCCAAGAGGGAACCCACCTTGTTTAATAAACCCTATTAA
TTGTACAAGCACTGATCCATGCATTTTTTCATATTGTGAAAATGGTGTATGTATTCCAAC
ATACATTTGTACTCCAACTCCATCTGTAACTCCAACTGTTACCCCAACTGTTACTCCAAC
TGTTACCCCAACTGTTACACCAACCGTTACTCCAACCGTTACCCCAACTCCAACTACAAC
TCCAACTCCATCACCAACCACTGTCCCACCAAGACCAACCCCAACTCC
Length of 3' end seq. 468
Connected seq. ID SFI265P
Connected seq. 
>SFI265P.Seq
CTGTTGGCCTACTGGNATTATTTATATATTTATAGTAACATTATATGAATATTTAAAAAT
TGGAAAACATTTTTTAAAAATTGGAAAACATTATTAAAAAAAGAAATAAATTGATTTTTA
ATTATAAAAAAAAAA----------TTAGTANAATCTTGTGAAATAGGTTTTGGTTGTCT
TGCAATTCCAAAAAATTGTAATGATAATGATCCATGTACCACTGATCATTGTGATCCAGC
TATAGGTTGTTATTATGATAAGTTTGATAATTGTGATGCATGTAATGCTGTAGATACTTG
TATTACAAATGATTTATGCTTCCCAAGGGAATGTAATCCAAGAGGGAACCCACCTTGTTT
AATAAACCCTATTAATTGTACAAGCACTGATCCATGCATTTTTTCATATTGTGAAAATGG
TGTATGTATTCCAACATACATTTGTACTCCAACTCCATCTGTAACTCCAACTGTTACCCC
AACTGTTACTCCAACTGTTACCCCAACTGTTACACCAACCGTTACTCCAACCGTTACCCC
AACTCCAACTACAACTCCAACTCCATCACCAACCACTGTCCCACCAAGACCAACCCCAAC
TCC
Length of connected seq. 593
Full length Seq ID -
Full length Seq. -
Length of full length seq. -