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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFI237
Library SF
(Link to library)
Clone ID SFI237
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID SFI237P
(Link to Original site)
Representative DNA sequence 
>SFI237 (SFI237Q) /CSM/SF/SFI2-B/SFI237Q.Seq.d/
CTGTTGGCCTACTGGGATTTTTTATATTTATATATTTATATATTTTTTTTTATTTTATTT
TCACACCCTATTCTATATAAATTAATTTTTTTTTTTTTTACCNCCNAATTAAAAAAAAAA
XXXXXXXXXXAGAAAAGAAAATTATTAAAGTTACATCTGAAGGTGAAACTGTAACATGTG
ATAAAATTGTTTGTGATCCATCATATTTCCCAAATAAAGTTCAAAANAAAGGTAAAATTA
TTCGTTCAATTTGTATTTTGAATGGTCCAATTCCATCTGCTGATAANAAATTTGAATCAC
TCCAAATCATTATCCCNCAAAAACAAGTTAAACGTCAATCANATATGNACGTTGGTGTTA
TGTCATCCGCTCATTGTGTCTGTCCAAAGGGTAAANACATTGCCATCGTTTCAGCCNCTG
TTGAAACCAATGAACCANANAAANAATTAGCNCCAGCTTACGCTTTATTAGGTCCAATTC
AANANAAATTTGTCTATATTTCTGATTTCATTGAACCAATTGCTGATGGNACNGCCGACA
ATGTTTTCATCTCAAAATCATATGATGCTACCTCNCNCTTTGAAACCNCNTGTGAAGATG
TCATGGATATGNACAANANAATCNCTGGTAAANATTTAGTTCTCNCTGTTCATCCAAATA
TTCTTAAACAACAANAANAAGCTGGNAACCAAGAACAAGAAGAACAATAAAAAAAAAAAT
AAAAAAATAAAAATAAAAAAATAAAAATAAAAAAAATAAATAAAAAAATTAAATTA
sequence update 2001.11.22
Translated Amino Acid sequence 
LLAYWDFLYLYIYIFFFILFSHPILYKLIFFFFTXXLKKK---

---EKKIIKVTSEGETVTCDKIVCDPSYFPNKVQXKGKIIRSICILNGPIPSADXKFESL
QIIIPQKQVKRQSXMXVGVMSSAHCVCPKGKXIAIVSAXVETNEPXKXLAPAYALLGPIQ
XKFVYISDFIEPIADGTADNVFISKSYDATSXFETXCEDVMDMXXXIXGKXLVLXVHPNI
LKQQXXAGNQEQEEQ*kkk*knknkkikikkinkkikl
Translated Amino Acid sequence (All Frames) 
Frame A:
LLAYWDFLYLYIYIFFFILFSHPILYKLIFFFFTXXLKKK---

---rkeny*syi*r*ncnm**ncl*siifpk*sskxr*nysfnlyfewsnsic**xi*it
pnhypxkts*tsixyxrwcyvirslclskg*xhchrfsxc*nq*txxxisxslrfirsns
xxiclyf*fh*tnc*wxxrqcfhlkii*cylxl*nxx*rchgyxqxnxw*xfssxcssky
s*ttxxswxprtrrtikkkikk*k*knknkknk*kn*i

Frame B:
cwptgifyiyifiyfflfyfhtlfyin*fffflppn*kk---

---EKKIIKVTSEGETVTCDKIVCDPSYFPNKVQXKGKIIRSICILNGPIPSADXKFESL
QIIIPQKQVKRQSXMXVGVMSSAHCVCPKGKXIAIVSAXVETNEPXKXLAPAYALLGPIQ
XKFVYISDFIEPIADGTADNVFISKSYDATSXFETXCEDVMDMXXXIXGKXLVLXVHPNI
LKQQXXAGNQEQEEQ*kkk*knknkkikikkinkkikl

Frame C:
vgllgffifiylyiffyfiftpysi*inffffyxxikkk---

---krkllklhlkvkl*hviklfvihhisqikfkxkvklfvqfvf*mvqfhllixnlnhs
kslsxknklnvnxixtlvlchplivsvqrvxtlpsfqpllkpmnxxxn*xqltly*vqfx
xnlsiflislnqllmxxptmfssqnhmmlpxxlkpxvkmswixtxxslvxi*fslfiqif
lnnxxklxtknkknnkkknkkikikk*k*kk*ikkln
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFI237 (SFI237Q) /CSM/SF/SFI2-B/SFI237Q.Seq.d/                        938   0.0
SSD420 (SSD420Q) /CSM/SS/SSD4-A/SSD420Q.Seq.d/                        928   0.0
SFJ116 (SFJ116Q) /CSM/SF/SFJ1-A/SFJ116Q.Seq.d/                        926   0.0
AFM524 (AFM524Q) /CSM/AF/AFM5-A/AFM524Q.Seq.d/                        926   0.0
SFI510 (SFI510Q) /CSM/SF/SFI5-A/SFI510Q.Seq.d/                        918   0.0
AFN656 (AFN656Q) /CSM/AF/AFN6-C/AFN656Q.Seq.d/                        916   0.0
SFE141 (SFE141Q) /CSM/SF/SFE1-B/SFE141Q.Seq.d/                        910   0.0
SFD219 (SFD219Q) /CSM/SF/SFD2-A/SFD219Q.Seq.d/                        908   0.0
SFJ186 (SFJ186Q) /CSM/SF/SFJ1-D/SFJ186Q.Seq.d/                        906   0.0
AFN874 (AFN874Q) /CSM/AF/AFN8-D/AFN874Q.Seq.d/                        904   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BG790353|BG790353.1 sae68c10.y1 Gm-c1064 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1064-3212 5' similar to TR:O65744 O65744 GDP DISSOCIATION INHIBITOR. ;, mRNA sequence.    62   1e-05  1
BI315670|BI315670.1 saf75f12.y1 Gm-c1078 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1078-2184 5' similar to TR:O65744 O65744 GDP DISSOCIATION INHIBITOR. ;, mRNA sequence.    62   1e-05  1
AI437629|AI437629.1 sa37e09.y1 Gm-c1004 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1004-1505 5' similar to TR:O24653 O24653 GDI2. ;, mRNA sequence.    62   1e-05  1
BU964562|BU964562.1 sas99a12.y1 Gm-c1036 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1036-12311 5' similar to TR:O65744 O65744 GDP DISSOCIATION INHIBITOR. ;, mRNA sequence.    62   1e-05  1
BE800797|BE800797.1 sq98c12.y1 Gm-c1049 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1049-1199 5' similar to TR:O65744 O65744 GDP DISSOCIATION INHIBITOR. ;, mRNA sequence.    62   1e-05  1
AW397479|AW397479.1 sg79d05.y1 Gm-c1007 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1007-2626 5' similar to TR:O65744 O65744 GDP DISSOCIATION INHIBITOR. ;, mRNA sequence.    62   1e-05  1
BI972870|BI972870.1 sai84a09.y1 Gm-c1065 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1065-7338 5' similar to TR:O65744 O65744 GDP DISSOCIATION INHIBITOR. ;, mRNA sequence.    44   5e-04  3
CA819801|CA819801.1 sau76c08.y1 Gm-c1071 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1071-6664 5' similar to TR:O65744 O65744 GDP DISSOCIATION INHIBITOR. ;, mRNA sequence.    44   7e-04  2
BE059980|BE059980.1 sn39e03.y1 Gm-c1027 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1027-9653 5' similar to TR:O65744 O65744 GDP DISSOCIATION INHIBITOR. ;, mRNA sequence.    44   7e-04  2
BI426472|BI426472.1 sag03f09.y1 Gm-c1080 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1080-257 5' similar to TR:O65744 O65744 GDP DISSOCIATION INHIBITOR. ;, mRNA sequence.    44   7e-04  2
dna update 2003.12.17
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF676817_1(EF676817|pid:none) Picea sitchensis clone WS02753_I09...   150   5e-35
EF085049_1(EF085049|pid:none) Picea sitchensis clone WS0297_P09 ...   150   5e-35
AJ401079_1(AJ401079|pid:none) Lycopersicon esculentum partial mR...   145   2e-33
AM710298_1(AM710298|pid:none) Lycopersicon esculentum GDI1 gene ...   145   2e-33
BT071197_1(BT071197|pid:none) Picea sitchensis clone WS0279_A10 ...   144   4e-33
AF251042_1(AF251042|pid:none) Mus musculus rab GDP dissociation ...   142   9e-33
AY086920_1(AY086920|pid:none) Arabidopsis thaliana clone 29536 m...   142   1e-32
AJ005836_1(AJ005836|pid:none) Cicer arietinum mRNA for GDP disso...   142   1e-32
AC004005_24(AC004005|pid:none) Arabidopsis thaliana chromosome 2...   141   2e-32
AF130987_1(AF130987|pid:none) Rattus norvegicus RAB GDP dissocia...   141   3e-32
protein update 2009. 5.26
PSORT 

 psg: 0.75  gvh: 0.54  alm: 0.30  top: 0.60  tms: 0.07  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.02  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 48.0 %: nuclear
	 28.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: Golgi
	  4.0 %: vesicles of secretory system

>> prediction for SFI237 is nuc
5' end seq. ID SFI237F
5' end seq. 
>SFI237F.Seq
CTGTTGGCCTACTGGGATTTTTTATATTTATATATTTATATATTTTTTTTTATTTTATTT
TCACACCCTATTCTATATAAATTAATTTTTTTTTTTTTTACCNCCNAATTAAAAAAAAAA
----------
Length of 5' end seq. 120
3' end seq. ID SFI237Z
3' end seq. 
>SFI237Z.Seq
NNNNNNNNNNAGAAAAGAAAATTATTAAAGTTACATCTGAAGGTGAAACTGTAACATGTG
ATAAAATTGTTTGTGATCCATCATATTTCCCAAATAAAGTTCAAAANAAAGGTAAAATTA
TTCGTTCAATTTGTATTTTGAATGGTCCAATTCCATCTGCTGATAANAAATTTGAATCAC
TCCAAATCATTATCCCNCAAAAACAAGTTAAACGTCAATCANATATGNACGTTGGTGTTA
TGTCATCCGCTCATTGTGTCTGTCCAAAGGGTAAANACATTGCCATCGTTTCAGCCNCTG
TTGAAACCAATGAACCANANAAANAATTAGCNCCAGCTTACGCTTTATTAGGTCCAATTC
AANANAAATTTGTCTATATTTCTGATTTCATTGAACCAATTGCTGATGGNACNGCCGACA
ATGTTTTCATCTCAAAATCATATGATGCTACCTCNCNCTTTGAAACCNCNTGTGAAGATG
TCATGGATATGNACAANANAATCNCTGGTAAANATTTAGTTCTCNCTGTTCATCCAAATA
TTCTTAAACAACAANAANAAGCTGGNAACCAAGAACAAGAAGAACAATAAAAAAAAAAAT
AAAAAAATAAAAATAAAAAAATAAAAATAAAAAAAATAAATAAAAAAATTAAATTA
Length of 3' end seq. 656
Connected seq. ID SFI237P
Connected seq. 
>SFI237P.Seq
CTGTTGGCCTACTGGGATTTTTTATATTTATATATTTATATATTTTTTTTTATTTTATTT
TCACACCCTATTCTATATAAATTAATTTTTTTTTTTTTTACCNCCNAATTAAAAAAAAAA
----------AGAAAAGAAAATTATTAAAGTTACATCTGAAGGTGAAACTGTAACATGTG
ATAAAATTGTTTGTGATCCATCATATTTCCCAAATAAAGTTCAAAANAAAGGTAAAATTA
TTCGTTCAATTTGTATTTTGAATGGTCCAATTCCATCTGCTGATAANAAATTTGAATCAC
TCCAAATCATTATCCCNCAAAAACAAGTTAAACGTCAATCANATATGNACGTTGGTGTTA
TGTCATCCGCTCATTGTGTCTGTCCAAAGGGTAAANACATTGCCATCGTTTCAGCCNCTG
TTGAAACCAATGAACCANANAAANAATTAGCNCCAGCTTACGCTTTATTAGGTCCAATTC
AANANAAATTTGTCTATATTTCTGATTTCATTGAACCAATTGCTGATGGNACNGCCGACA
ATGTTTTCATCTCAAAATCATATGATGCTACCTCNCNCTTTGAAACCNCNTGTGAAGATG
TCATGGATATGNACAANANAATCNCTGGTAAANATTTAGTTCTCNCTGTTCATCCAAATA
TTCTTAAACAACAANAANAAGCTGGNAACCAAGAACAAGAAGAACAATAAAAAAAAAAAT
AAAAAAATAAAAATAAAAAAATAAAAATAAAAAAAATAAATAAAAAAATTAAATTA
Length of connected seq. 766
Full length Seq ID -
Full length Seq. -
Length of full length seq. -