SFI214 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

SFI214
Library	SF (Link to library)
Clone ID	SFI214 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U15046-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/SF/SFI2-A/SFI214Q.Seq.d/
Representative seq. ID	SFI214E (Link to Original site)
Representative DNA sequence	>SFI214 (SFI214Q) /CSM/SF/SFI2-A/SFI214Q.Seq.d/ ACTGTTGGCCTACTGGNAATTGAATCTATCCAATTCAAAAAAATAAAAAATAAATTAATT TATTCTGTAATATAAAAATAAAGATTTTTTTTATTTTTTTAATATTAAAAATGAAATTAA ATAATTCATTTTTTTTTATGTCGGTAATATTTGTATTTTTAATAATAATACAATTTTCAA CTGCAACATATTCAAAATCAGNAAATTGAATATTATAAAAGATTTGGATATAATTTGGAA ACTGGAGAATATACTCGGTCTTCACCACACCAACACCAACAACAATATCAACAACAACCA CAATCACGTCAACGTAATAGACACAATAGTCGTTATGGTAGTGAAAGAAGATCAAGACAA AATCCATATAATGAAGATTATTATTCCAATCAAAATTATTACCAACAAACTTCAAATGAT TTGGATGAAACGGCACCAGTTTATAAACAAGGTGTTTCAATTCCAAAAAATATCAATGTT GGAATTAGTATTGATGAGGTAACACCAAATGTCATAGTTGAAACTAATAAACCTACCTTT TCACAATCGTTAACTAAACCAACTGAAAAACCAACTTTACCACTAAAACCATCAATTGAA CCAACTTTACCAACAACAAGAAAACCTGTTGAACCAGAACCTAAAAAGACTCTTCCCCCA ACAACTCAACCACCAGAAACTATTTCACCAAAATCTCAAACTACTCCAGCAATTACCCAA CATCAAANNTCAACACCATCTCCATCCCAACAATCTCATCATTTCTTTTATGGTGATGGT AGACCAGCAGGTGCTGGTACTGATGATAAAGAAGAAGAAGAAACTAAAACACCAACTCGT ACTCATAAACCAATAAATATTGATGATGATGATGATGATGACGAAACAAAAAAACCAACT AGATTAAATAATAATGATAATAATAAAAATAATAATCATAGAAATAATAACAATAATAAA GATGATGATGATGAAGATGAAGATGAAGATGAAAATAAAAATAAGAATAAGAATAAAGGA AAACCAAATATTGATGACGAAGACAATGATGAAGATGATGATGAACCAGAAGAAACTGAA GAACCAACAATTACAGGTTCTATTGAAGAAGCTAAAACACCAGATCCAAATCTTATTGAA GGATATTCTAGTGAAAGTGATCCTAGTGGGAGTCAATCAACCCATGAAGATAATTTAATA GCTACTCAATCAAATTCAAGTGGTAAAATTTCAATAACCTTTTTTTCTTTTATTATCTTT TCTTTTACAATTGTTTTTTTTTAATTTATTTAAATAAAATTTTTCTTTAAATTAT
sequence update	2003. 5. 4
Translated Amino Acid sequence	tvgllxiesiqfkkiknkliysvikrfflffykniihfflcrylyf*YNFQ LQHIQNQXIEYYKRFGYNLETGEYTRSSPHQHQQQYQQQPQSRQRNRHNSRYGSERRSRQ NPYNEDYYSNQNYYQQTSNDLDETAPVYKQGVSIPKNINVGISIDEVTPNVIVETNKPTF SQSLTKPTEKPTLPLKPSIEPTLPTTRKPVEPEPKKTLPPTTQPPETISPKSQTTPAITQ HQXSTPSPSQQSHHFFYGDGRPAGAGTDDKEEEETKTPTRTHKPINIDDDDDDDETKKPT RLNNNDNNKNNNHRNNNNNKDDDDEDEDEDENKNKNKNKGKPNIDDEDNDEDDDEPEETE EPTITGSIEEAKTPDPNLIEGYSSESDPSGSQSTHEDNLIATQSNSSGKISITFFSFIIF SFTIVFFfi*ikfffkl
Translated Amino Acid sequence (All Frames)	Frame A: tvgllxiesiqfkkiknkliysvikrfflffykniihfflcrylyf*YNFQ LQHIQNQXIEYYKRFGYNLETGEYTRSSPHQHQQQYQQQPQSRQRNRHNSRYGSERRSRQ NPYNEDYYSNQNYYQQTSNDLDETAPVYKQGVSIPKNINVGISIDEVTPNVIVETNKPTF SQSLTKPTEKPTLPLKPSIEPTLPTTRKPVEPEPKKTLPPTTQPPETISPKSQTTPAITQ HQXSTPSPSQQSHHFFYGDGRPAGAGTDDKEEEETKTPTRTHKPINIDDDDDDDETKKPT RLNNNDNNKNNNHRNNNNNKDDDDEDEDEDENKNKNKNKGKPNIDDEDNDEDDDEPEETE EPTITGSIEEAKTPDPNLIEGYSSESDPSGSQSTHEDNLIATQSNSSGKISITFFSFIIF SFTIVFFfiikfffkl Frame B: llaywxlnlsnskkkinfilyknkdffyffnikneikfiffyvgnicifnnntifn cnifkixklniikdldiiwklenilglhhtntnnninnnhnhvnvidtivvmvvkedqdk ihimkiiipikiitnklqmiwmkrhqfinkvfqfqkismlelvlmrhqmslklinlpf hnrlnqlknqlyhnhqlnqlyqqqenllnqnlkrlfpqqlnhqklfhqnlkllqqlpn ikxqhhlhpnnliisfmvmvdqqvlvlmikkkkklkhqlvlinqilmmmmmmtkqknql diimiiikiiiieiitiikmmmmkmkmkmkikiririkenqilmtktmmkmmmnqkklk nqqlqvllkklkhqiqillkdilvkvilvgvnqpmkiillnqiqvvkfqpfflllsf llqlfffnlfknfslny Frame C: cwptgniypiqknkkinlfcnikikiffiflilkmklnnsfffmsvifvfliiiqfst atysksxnilkiwifgnwriysvfttptpttisttttitst*tqslwkkiktk sirllfqskllptnfkfgngtsltrcfnskkyqcwny*gntkchsn*tylf tivntnktnfttktintnftnnkktctrtkdsspnnsttrnyftkisnyssnypt sxxntisiptissfllwwtsrcwy**rrrrnntnsystnky*****rnkktn ik****kskqr**rrrkkeerktkyrrqr**trrnr tnnyrfyrsntrsksyrifkswesinprfnsysikfkwnfnnlfffyylf fyncffliylnkifl*i
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value SFI214 (SFI214Q) /CSM/SF/SFI2-A/SFI214Q.Seq.d/ 1072 0.0 CFD787 (CFD787Q) /CSM/CF/CFD7-D/CFD787Q.Seq.d/ 476 e-133 SLH292 (SLH292Q) /CSM/SL/SLH2-D/SLH292Q.Seq.d/ 418 e-116 CFA525 (CFA525Q) /CSM/CF/CFA5-B/CFA525Q.Seq.d/ 343 4e-93 CHK236 (CHK236Q) /CSM/CH/CHK2-B/CHK236Q.Seq.d/ 339 7e-92 SLD846 (SLD846Q) /CSM/SL/SLD8-B/SLD846Q.Seq.d/ 178 1e-43 CFG450 (CFG450Q) /CSM/CF/CFG4-C/CFG450Q.Seq.d/ 163 8e-39 SHB412 (SHB412Q) /CSM/SH/SHB4-A/SHB412Q.Seq.d/ 50 9e-05 VHH496 (VHH496Q) /CSM/VH/VHH4-D/VHH496Q.Seq.d/ 44 0.005 VHC744 (VHC744Q) /CSM/VH/VHC7-B/VHC744Q.Seq.d/ 44 0.005
own update	2003.10.29
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N AC116957\|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 44 1e-04 7 AC003042\|AC003042.1 Homo sapiens chromosome 17, clone HCIT75G16, complete sequence. 52 3e-04 4 AC116984\|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 36 4e-04 12 AC115685\|AC115685.1 Dictyostelium discoideum chromosome 2 map 4718821-4752388 strain AX4, complete sequence. 36 8e-04 6 BH149983\|BH149983.1 ENTQD93TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 46 0.001 2 AZ551618\|AZ551618.1 ENTDV54TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 44 0.003 2 AZ531291\|AZ531291.1 ENTBQ34TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 44 0.003 3 AZ548467\|AZ548467.1 ENTEK30TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 44 0.004 2 AZ551092\|AZ551092.1 ENTFJ22TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 44 0.004 3 BH160272\|BH160272.1 ENTQV49TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 44 0.004 2
dna update	2003. 9. 7
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value (Q54QR5) RecName: Full=Uncharacterized transmembrane protein DDB... 270 5e-80
protein update	2009. 4.14
PSORT	psg: 0.68 gvh: 0.30 alm: 0.24 top: 0.57 tms: 0.07 mit: 0.19 mip: 0.00 nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 1.00 m3a: 0.00 m3b: 0.00 m_ : 0.00 20.0 %: cytoplasmic 16.0 %: nuclear 16.0 %: vesicles of secretory system 12.0 %: endoplasmic reticulum 8.0 %: Golgi 8.0 %: mitochondrial 8.0 %: plasma membrane 4.0 %: extracellular, including cell wall 4.0 %: cytoskeletal 4.0 %: vacuolar >> prediction for SFI214 is cyt
5' end seq. ID	SFI214F
5' end seq.	>SFI214F.Seq ACTGTTGGCCTACTGGNAATTGAATCTATCCAATTCAAAAAAATAAAAAATAAATTAATT TATTCTGTAATATAAAAATAAAGATTTTTTTTATTTTTTTAATATTAAAAATGAAATTAA ATAATTCATTTTTTTTTATGTCGGTAATATTTGTATTTTTAATAATAATACAATTTTCAA CTGCAACATATTCAAAATCAGNAAATTGAATATTATAAAAGATTTGGATATAATTTGGAA ACTGGAGAATATACTCGGTCTTCACCACACCAACACCAACAACAATATCAACAACAACCA CAATCACGTCAACGTAATAGACACAATAGTCGTTATGGTAGTGAAAGAAGATCAAGACAA AATCCATATAATGAAGATTATTATTCCAATCAAAATTATTACCAACAAACTTCAAATGAT TTGGATGAAACGGCACCAGTTTATAAACAAGGTGTTTCAATTCCAAAAAATATCAATGTT GGAATTAGTATTGATGAGGTAACACCAAATGTCATAGTTGAAACTAATAAACCTACCTTT TCACAATCGTTAACTAAACCAACTGAAAAACCAACTTTACCACTAAAACCATCAATTGAA CCAACTTTACCAACAACAAGAAAACCTGTTGAACCAGAACCTAAAAAGACTCTTCCCCCA ACAACTCAACCACCAGAAACTATTTCACCAAAATCTCAAACTACTCCAGCAATTACCCAA CATCAAATATCAACACCATCTCCATCCCAACAATCTCATCATTTCTTTTATGGTGATGGT AGACCAGCAGGTGCTGGTACTGATGATAAAGAAGAAGAAGAAACTAAAACACCAACTCGT ACTCATAAACCAATAAATATTGATGATGATGATGATGATGACGAAACAAAAAAACCAACT AGATTAAATAATAATGATAATAATAAAAATAATAATCATAGAAATAATAACAATAATAAA GNNNNNNNNNN
Length of 5' end seq.	971
3' end seq. ID	SFI214Z
3' end seq.	>SFI214Z.Seq NNNNNNNNNNATTACCCAACATCAAAATTCAACACCATCTCCATCCCAACAATCTCATCA TTTCTTTTATGGTGATGGTAGACCAGCAGGTGCTGGTACTGATGATAAAGAAGAAGAAGA AACTAAAACACCAACTCGTACTCATAAACCAATAAATATTGATGATGATGATGATGATGA CGAAACAAAAAAACCAACTAGATTAAATAATAATGATAATAATAAAAATAATAATCATAG AAATAATAACAATAATAAAGATGATGATGATGAAGATGAAGATGAAGATGAAAATAAAAA TAAGAATAAGAATAAAGGAAAACCAAATATTGATGACGAAGACAATGATGAAGATGATGA TGAACCAGAAGAAACTGAAGAACCAACAATTACAGGTTCTATTGAAGAAGCTAAAACACC AGATCCAAATCTTATTGAAGGATATTCTAGTGAAAGTGATCCTAGTGGGAGTCAATCAAC CCATGAAGATAATTTAATAGCTACTCAATCAAATTCAAGTGGTAAAATTTCAATAACCTT TTTTTCTTTTATTATCTTTTCTTTTACAATTGTTTTTTTTTAATTTATTTAAATAAAATT TTTCTTTAAATTAT
Length of 3' end seq.	614
Connected seq. ID	SFI214P
Connected seq.	>SFI214P.Seq ACTGTTGGCCTACTGGNAATTGAATCTATCCAATTCAAAAAAATAAAAAATAAATTAATT TATTCTGTAATATAAAAATAAAGATTTTTTTTATTTTTTTAATATTAAAAATGAAATTAA ATAATTCATTTTTTTTTATGTCGGTAATATTTGTATTTTTAATAATAATACAATTTTCAA CTGCAACATATTCAAAATCAGNAAATTGAATATTATAAAAGATTTGGATATAATTTGGAA ACTGGAGAATATACTCGGTCTTCACCACACCAACACCAACAACAATATCAACAACAACCA CAATCACGTCAACGTAATAGACACAATAGTCGTTATGGTAGTGAAAGAAGATCAAGACAA AATCCATATAATGAAGATTATTATTCCAATCAAAATTATTACCAACAAACTTCAAATGAT TTGGATGAAACGGCACCAGTTTATAAACAAGGTGTTTCAATTCCAAAAAATATCAATGTT GGAATTAGTATTGATGAGGTAACACCAAATGTCATAGTTGAAACTAATAAACCTACCTTT TCACAATCGTTAACTAAACCAACTGAAAAACCAACTTTACCACTAAAACCATCAATTGAA CCAACTTTACCAACAACAAGAAAACCTGTTGAACCAGAACCTAAAAAGACTCTTCCCCCA ACAACTCAACCACCAGAAACTATTTCACCAAAATCTCAAACTACTCCAGCAATTACCCAA CATCAAATATCAACACCATCTCCATCCCAACAATCTCATCATTTCTTTTATGGTGATGGT AGACCAGCAGGTGCTGGTACTGATGATAAAGAAGAAGAAGAAACTAAAACACCAACTCGT ACTCATAAACCAATAAATATTGATGATGATGATGATGATGACGAAACAAAAAAACCAACT AGATTAAATAATAATGATAATAATAAAAATAATAATCATAGAAATAATAACAATAATAAA G----------ATTACCCAACATCAAAATTCAACACCATCTCCATCCCAACAATCTCATC ATTTCTTTTATGGTGATGGTAGACCAGCAGGTGCTGGTACTGATGATAAAGAAGAAGAAG AAACTAAAACACCAACTCGTACTCATAAACCAATAAATATTGATGATGATGATGATGATG ACGAAACAAAAAAACCAACTAGATTAAATAATAATGATAATAATAAAAATAATAATCATA GAAATAATAACAATAATAAAGATGATGATGATGAAGATGAAGATGAAGATGAAAATAAAA ATAAGAATAAGAATAAAGGAAAACCAAATATTGATGACGAAGACAATGATGAAGATGATG ATGAACCAGAAGAAACTGAAGAACCAACAATTACAGGTTCTATTGAAGAAGCTAAAACAC CAGATCCAAATCTTATTGAAGGATATTCTAGTGAAAGTGATCCTAGTGGGAGTCAATCAA CCCATGAAGATAATTTAATAGCTACTCAATCAAATTCAAGTGGTAAAATTTCAATAACCT TTTTTTCTTTTATTATCTTTTCTTTTACAATTGTTTTTTTTTAATTTATTTAAATAAAAT TTTTCTTTAAATTAT
Length of connected seq.	1565
Full length Seq ID	SFI214E
Full length Seq.	>SFI214E.Seq ACTGTTGGCCTACTGGNAATTGAATCTATCCAATTCAAAAAAATAAAAAATAAATTAATT TATTCTGTAATATAAAAATAAAGATTTTTTTTATTTTTTTAATATTAAAAATGAAATTAA ATAATTCATTTTTTTTTATGTCGGTAATATTTGTATTTTTAATAATAATACAATTTTCAA CTGCAACATATTCAAAATCAGNAAATTGAATATTATAAAAGATTTGGATATAATTTGGAA ACTGGAGAATATACTCGGTCTTCACCACACCAACACCAACAACAATATCAACAACAACCA CAATCACGTCAACGTAATAGACACAATAGTCGTTATGGTAGTGAAAGAAGATCAAGACAA AATCCATATAATGAAGATTATTATTCCAATCAAAATTATTACCAACAAACTTCAAATGAT TTGGATGAAACGGCACCAGTTTATAAACAAGGTGTTTCAATTCCAAAAAATATCAATGTT GGAATTAGTATTGATGAGGTAACACCAAATGTCATAGTTGAAACTAATAAACCTACCTTT TCACAATCGTTAACTAAACCAACTGAAAAACCAACTTTACCACTAAAACCATCAATTGAA CCAACTTTACCAACAACAAGAAAACCTGTTGAACCAGAACCTAAAAAGACTCTTCCCCCA ACAACTCAACCACCAGAAACTATTTCACCAAAATCTCAAACTACTCCAGCAATTACCCAA CATCAAANNTCAACACCATCTCCATCCCAACAATCTCATCATTTCTTTTATGGTGATGGT AGACCAGCAGGTGCTGGTACTGATGATAAAGAAGAAGAAGAAACTAAAACACCAACTCGT ACTCATAAACCAATAAATATTGATGATGATGATGATGATGACGAAACAAAAAAACCAACT AGATTAAATAATAATGATAATAATAAAAATAATAATCATAGAAATAATAACAATAATAAA GATGATGATGATGAAGATGAAGATGAAGATGAAAATAAAAATAAGAATAAGAATAAAGGA AAACCAAATATTGATGACGAAGACAATGATGAAGATGATGATGAACCAGAAGAAACTGAA GAACCAACAATTACAGGTTCTATTGAAGAAGCTAAAACACCAGATCCAAATCTTATTGAA GGATATTCTAGTGAAAGTGATCCTAGTGGGAGTCAATCAACCCATGAAGATAATTTAATA GCTACTCAATCAAATTCAAGTGGTAAAATTTCAATAACCTTTTTTTCTTTTATTATCTTT TCTTTTACAATTGTTTTTTTTTAATTTATTTAAATAAAATTTTTCTTTAAATTAT
Length of full length seq.	1315

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas