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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFI206
Library SF
(Link to library)
Clone ID SFI206
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12547-1
Original site URL
Representative seq. ID SFI206F
(Link to Original site)
Representative DNA sequence 
>SFI206 (SFI206Q) /CSM/SF/SFI2-A/SFI206Q.Seq.d/
CAAATTGAAGATAATGGTTGGCCAGAATCATGCATTAGGTAGAAAATTAGTAAAATCATT
AATTGATTACTATAAGNAAATTGGNAAGATGTTCAAACATTGGCTACAATATCTTGTATT
TTAATTTTAGCTGCAAATCAATTACAAAAATTGAAAAATGGTGAATCGATAACCTCAATT
GGTTCATCGTCTTCATCATCATCATCTTCATTGGCATCTTCACCTTTAACATTTTCTGCT
GGAGGTGGTGGTGGTGGTAGCTACTCACCAATGTTTAATTTCTCTGCAATTTCAATTAGT
GCTCCAATGGGTATCGATGATATGGTTTCAAAACAAAAAGGTCATCXXXXXXXXXX
sequence update 2001. 6. 1
Translated Amino Acid sequence 
qiedngwpescir*kiskiin*ll*XNWXDVQTLATISCILILAANQLQKLKNGESITSI
GSSSSSSSSSLASSPLTFSAGGGGGGSYSPMFNFSAISISAPMGIDDMVSKQKGH---
Translated Amino Acid sequence (All Frames) 
Frame A:
qiedngwpescir*kiskiin*ll*XNWXDVQTLATISCILILAANQLQKLKNGESITSI
GSSSSSSSSSLASSPLTFSAGGGGGGSYSPMFNFSAISISAPMGIDDMVSKQKGH---


Frame B:
klkimvgqnhalgrklvkslidyykxigkmfkhwlqylvf*f*lqinykn*kmvnr*pql
vhrlhhhhlhwhlhl*hfllevvvvvathqclislqfqlvlqwvsmiwfqnkkv---


Frame C:
n*r*wlarimh*ven**nh*litixklxrcsnigynilyfnfscksitkiekw*idnlnw
fivfiiiifigiftfnifcwrwwww*lltnv*flcnfn*csngyr*ygfktkrs---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFI206 (SFI206Q) /CSM/SF/SFI2-A/SFI206Q.Seq.d/                        674   0.0
SFF514 (SFF514Q) /CSM/SF/SFF5-A/SFF514Q.Seq.d/                        630   e-180
SLF305 (SLF305Q) /CSM/SL/SLF3-A/SLF305Q.Seq.d/                        615   e-175
VFG580 (VFG580Q) /CSM/VF/VFG5-D/VFG580Q.Seq.d/                        583   e-166
VHG559 (VHG559Q) /CSM/VH/VHG5-C/VHG559Q.Seq.d/                         50   2e-05
VFJ759 (VFJ759Q) /CSM/VF/VFJ7-C/VFJ759Q.Seq.d/                         48   9e-05
VSI381 (VSI381Q) /CSM/VS/VSI3-D/VSI381Q.Seq.d/                         46   4e-04
VSI151 (VSI151Q) /CSM/VS/VSI1-C/VSI151Q.Seq.d/                         46   4e-04
VFF863 (VFF863Q) /CSM/VF/VFF8-C/VFF863Q.Seq.d/                         46   4e-04
SSE392 (SSE392Q) /CSM/SS/SSE3-D/SSE392Q.Seq.d/                         46   4e-04
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strainAX4, complete sequence.    40   1e-11  14
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence.    54   6e-11  9
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    36   2e-09  14
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence.    40   3e-08  12
AC116988|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    34   4e-08  15
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence.    38   1e-07  11
AC115599|AC115599.2 Dictyostelium discoideum chromosome 2 map 4229098-4354721 strain AX4, complete sequence.    38   2e-06  9
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    46   2e-06  14
CG095351|CG095351.1 PUFZK92TB ZM_0.6_1.0_KB Zea mays genomic clone ZMMBTa0768O15, genomic survey sequence.    56   3e-06  2
AC115577|AC115577.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence.    38   8e-06  8
dna update 2004. 1. 1
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3101297
Number of Hits to DB: 436,065,725
protein update 2009. 5.25
PSORT 

 psg: 0.75  gvh: 0.57  alm: 0.35  top: 0.53  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 16.0 %: mitochondrial
	 16.0 %: nuclear
	  8.0 %: vacuolar
	  8.0 %: peroxisomal
	  4.0 %: endoplasmic reticulum

>> prediction for SFI206 is cyt
5' end seq. ID SFI206F
5' end seq. 
>SFI206F.Seq
CAAATTGAAGATAATGGTTGGCCAGAATCATGCATTAGGTAGAAAATTAGTAAAATCATT
AATTGATTACTATAAGNAAATTGGNAAGATGTTCAAACATTGGCTACAATATCTTGTATT
TTAATTTTAGCTGCAAATCAATTACAAAAATTGAAAAATGGTGAATCGATAACCTCAATT
GGTTCATCGTCTTCATCATCATCATCTTCATTGGCATCTTCACCTTTAACATTTTCTGCT
GGAGGTGGTGGTGGTGGTAGCTACTCACCAATGTTTAATTTCTCTGCAATTTCAATTAGT
GCTCCAATGGGTATCGATGATATGGTTTCAAAACAAAAAGGTCATC----------
Length of 5' end seq. 346
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -