SFI194 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

SFI194
Library	SF (Link to library)
Clone ID	SFI194 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U16358-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/SF/SFI1-D/SFI194Q.Seq.d/
Representative seq. ID	SFI194P (Link to Original site)
Representative DNA sequence	>SFI194 (SFI194Q) /CSM/SF/SFI1-D/SFI194Q.Seq.d/ ACTGTTGGCCTACTGGNACTTCACAAAAAACATTTTCTAATAAAACAGNATAAATTAAAA AATGACTACCTTTAACGAATATCCATTCTTGGCTGAATTAGGCATTAAAGCTGAAAATAA TGATGGAGTCTTCAATGGAAAATGGGGAGGTGCTGGTGAAATCATCAAATGTTTAAATCC AACAAATAATAAAGTTATTGCAACTGTTAGAGGTGCTGCACCAGAAGAATATGAAACATG TATTCAAGCAATGTTAGCAGCAAAAGTAAAATGGGCATTAACACCAGCTCCAAGAAGAGG TGAAATTGTTAGATTAATTGGTCAAGCCATGAGAGAAAAAATTGAACCATTATCAAAATT AATTTCATTAGAAATGGGTAAAATTTACATTGAAGCTAAAGGTGAAGTACAAGAATTCAT TGACGTATGCGATTATGCAACTGGTTTAAGTAGATCAATCAATGGTCAAGTGATGCCATC TGAACGTCCAAATCACATTTTAATGGAAACCTGGAATCCATTAGGTTTAGTTGGTATCAT TACTGCTTTCAATTTCCCATGTGCCGTACTTGGTTGGAATGCTGCAATCTCAATGATTTG CGGTAACGTXXXXXXXXXXGAAGGTNTTGAANAAATAAAAAAGCAAGGTGGTAAGGTCGT CATTGGTGGTAATAAACTCGANATCAGTGGTGGAAACTTTGTTGAACCAACCGTCGTTGC CATTGAACATGATGCTCCAATNGTAAANACTGAACTNTTTGTTCCAATTNTNTACATAAT GAAATTCAAAAATNTTGACGATGCTTTTGCCTGGAATAATGAAGTCCCNCAAGGTNTNTC ATNTTCCCTNTTCACAAACAATCAAAANAATATCTTCAAATGGCTTGGACCNACCGGATC TGACTGTGGNATAGTTAACGTAAATGNAGCTACNAACGGTGCTGAAATTGGTGGNGCCNT TGGAGGTGAAAAAAAGACCGGAGGTGGTANANAATCTGGCNCAGACAGCTGGAAACAGTA TTGCCGTCGTAGNACTAANACNATCAACTATGGTAANACTANGCCNTTATCNCAAGGNAT CNATTTTAACTAAAATTACCNAAAAAAAAAAACCAAATGTAACTTACATAACATAAATAA AAGAA
sequence update	2001.11.22
Translated Amino Acid sequence	llaywxftknif*nxinKMTTFNEYPFLAELGIKAENNDGVFNGKWGGAGEIIKCLNP TNNKVIATVRGAAPEEYETCIQAMLAAKVKWALTPAPRRGEIVRLIGQAMREKIEPLSKL ISLEMGKIYIEAKGEVQEFIDVCDYATGLSRSINGQVMPSERPNHILMETWNPLGLVGII TAFNFPCAVLGWNAAISMICGN--- ---EGXEXIKKQGGKVVIGGNKLXISGGNFVEPTVVAIEHDAPXVXTELFVPIXYIMKFK NXDDAFAWNNEVPQGXSXSLFTNNQXNIFKWLGPTGSDCGIVNVNXATNGAEIGGAXGGE KKTGGGXXSGXDSWKQYCRRXTXTINYGXTXPLSQGIXFN*nyxkkktkcnlhninkr
Translated Amino Acid sequence (All Frames)	Frame A: tvgllxlhkkhflikqxklkndylrisilgirhsk*wslqwkmgrcwnhqmfks nk*sycncrcctrrinmyssnvsskskmgintsskkrncinwssherkntiiki nfirngnlhsrstrihrmrlcnwfkinqwssdaitskshfngnlesirfswyh ycfqfpmcrtwleccnlndlrr--- ---EGXEXIKKQGGKVVIGGNKLXISGGNFVEPTVVAIEHDAPXVXTELFVPIXYIMKFK NXDDAFAWNNEVPQGXSXSLFTNNQXNIFKWLGPTGSDCGIVNVNXATNGAEIGGAXGGE KKTGGGXXSGXDSWKQYCRRXTXTINYGXTXPLSQGIXFNnyxkkktkcnlhninkr Frame B: llaywxftknifnxinKMTTFNEYPFLAELGIKAENNDGVFNGKWGGAGEIIKCLNP TNNKVIATVRGAAPEEYETCIQAMLAAKVKWALTPAPRRGEIVRLIGQAMREKIEPLSKL ISLEMGKIYIEAKGEVQEFIDVCDYATGLSRSINGQVMPSERPNHILMETWNPLGLVGII TAFNFPCAVLGWNAAISMICGN--- ---kvlxkkskvvrsslvvinsxsvvetllnqpslplnmmlqxxlnxlfqxxt*nsk xltmllpgimksxkvxhxpxsqtikxissngldxpdltvxltmxlxtvlklvxplevk krpevvxnlaqtagnsiavvxlxxstmvxlxxyxkxsiltkitxkkkpnvtyitike Frame C: cwptgtsqktfsnktxikklpltnihswlnalklkimmessmengevlvkssnviq qiikllqllevlhqknmkhvfkqcqqknghhqlqeevklldlvkpekklnhyqn fhkwvkftlklkvkyknsltyaimqlvvdqsmvkchlnvqitfwkpgihvlvsl llsishvpylvgmlqsqfavt--- ---rxxnkkarwgrhwwtrxqwwklctnrrchtcsnxkxtxcsnxxhneiqk xrcfcle*spxrxxxfpxhkqskxylqmawtxrilwxsrkxsyxrcnwwxxwrk kdrrwxxiwxrqletvlpsxxxqlwxxaxixrxxflklpkkknqmlthkk
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value SFI194 (SFI194Q) /CSM/SF/SFI1-D/SFI194Q.Seq.d/ 1889 0.0 AFH567 (AFH567Q) /CSM/AF/AFH5-C/AFH567Q.Seq.d/ 1172 0.0 SFG478 (SFG478Q) /CSM/SF/SFG4-D/SFG478Q.Seq.d/ 1162 0.0 VFK658 (VFK658Q) /CSM/VF/VFK6-C/VFK658Q.Seq.d/ 1158 0.0 VFB844 (VFB844Q) /CSM/VF/VFB8-B/VFB844Q.Seq.d/ 1158 0.0 SFK705 (SFK705Q) /CSM/SF/SFK7-A/SFK705Q.Seq.d/ 1158 0.0 SFI562 (SFI562Q) /CSM/SF/SFI5-C/SFI562Q.Seq.d/ 1158 0.0 SFF818 (SFF818Q) /CSM/SF/SFF8-A/SFF818Q.Seq.d/ 1158 0.0 SFE780 (SFE780Q) /CSM/SF/SFE7-D/SFE780Q.Seq.d/ 1158 0.0 SFD744 (SFD744Q) /CSM/SF/SFD7-B/SFD744Q.Seq.d/ 1158 0.0
own update	2004.12.25
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N AC117072\|AC117072.2 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence. 783 0.0 9 BU042811\|BU042811.1 PP_LEa0014A23f Peach developing fruit mesocarp Prunus persica cDNA clone PP_LEa0014A23f, mRNA sequence. 74 7e-12 2 D88434\|D88434.1 Malus domestica mRNA for protein abundantly expressed during apple fruit development, complete cds. 72 2e-08 2 AY034889\|AY034889.1 Tortula ruralis aldehyde dehydrogenase ALDH2 (RNP129b) mRNA, complete cds. 46 2e-07 3 BJ550374\|BJ550374.1 Hordeum vulgare subsp. spontaneum strain H602 cDNA clone:bah41j06, 5' mRNA sequence. 44 1e-05 4 BF200236\|BF200236.1 WHE2254_E08_J16ZE Triticum monococcum vegetative apex cDNA library Triticum monococcum cDNA clone WHE2254_E08_J16, mRNA sequence. 52 2e-05 3 BU111535\|BU111535.1 603126401F1 CSEQCHL13 Gallus gallus cDNA clone ChEST96a2 5', mRNA sequence. 42 3e-05 3 CD733534\|CD733534.1 4045967 1GAL - Chicken Intestinal Lymphocyte Gallus gallus cDNA clone 1GAL_17H10 5', mRNA sequence. 42 4e-05 3 BG711333\| (S74728) antiquitin=26g turgor protein homolog [human, kidney, Peptide, 511 aa] [Homo sapiens]G, mRNA sequence. 42 4e-05 3 BU488446\|BU488446.1 604125245F1 CSEQRBN36 Gallus gallus cDNA clone ChEST943i12 5', mRNA sequence. 42 4e-05 3
dna update	2003.12.16
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value (P83401) RecName: Full=Putative aldehyde dehydrogenase family 7 ... 375 e-102 BC044367_1(BC044367\|pid:none) Danio rerio aldehyde dehydrogenase... 233 9e-60 EF678715_1(EF678715\|pid:none) Picea sitchensis clone WS0295_M17 ... 231 5e-59 BT044648_1(BT044648\|pid:none) Salmo salar clone ssal-rgf-001-326... 229 2e-58 AF323586_1(AF323586\|pid:none) Oryza sativa aldehyde dehydrogenas... 224 3e-57 AY847462_1(AY847462\|pid:none) Acanthopagrus schlegelii antiquiti... 223 9e-57 AY883858_1(AY883858\|pid:none) Sterkiella histriomuscorum turgor ... 222 2e-56 AK297365_1(AK297365\|pid:none) Homo sapiens cDNA FLJ56008 complet... 221 3e-56 (P49419) RecName: Full=Alpha-aminoadipic semialdehyde dehydrogen... 221 3e-56 BT067707_1(BT067707\|pid:none) Zea mays full-length cDNA clone ZM... 221 5e-56
protein update	2009. 5.25
PSORT	psg: 0.78 gvh: 0.31 alm: 0.29 top: 0.63 tms: 0.07 mit: 0.21 mip: 0.00 nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 1.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 0.00 52.0 %: nuclear 28.0 %: cytoplasmic 8.0 %: mitochondrial 8.0 %: Golgi 4.0 %: vesicles of secretory system >> prediction for SFI194 is nuc
5' end seq. ID	SFI194F
5' end seq.	>SFI194F.Seq ACTGTTGGCCTACTGGNACTTCACAAAAAACATTTTCTAATAAAACAGNATAAATTAAAA AATGACTACCTTTAACGAATATCCATTCTTGGCTGAATTAGGCATTAAAGCTGAAAATAA TGATGGAGTCTTCAATGGAAAATGGGGAGGTGCTGGTGAAATCATCAAATGTTTAAATCC AACAAATAATAAAGTTATTGCAACTGTTAGAGGTGCTGCACCAGAAGAATATGAAACATG TATTCAAGCAATGTTAGCAGCAAAAGTAAAATGGGCATTAACACCAGCTCCAAGAAGAGG TGAAATTGTTAGATTAATTGGTCAAGCCATGAGAGAAAAAATTGAACCATTATCAAAATT AATTTCATTAGAAATGGGTAAAATTTACATTGAAGCTAAAGGTGAAGTACAAGAATTCAT TGACGTATGCGATTATGCAACTGGTTTAAGTAGATCAATCAATGGTCAAGTGATGCCATC TGAACGTCCAAATCACATTTTAATGGAAACCTGGAATCCATTAGGTTTAGTTGGTATCAT TACTGCTTTCAATTTCCCATGTGCCGTACTTGGTTGGAATGCTGCAATCTCAATGATTTG CGGTAACGT----------
Length of 5' end seq.	609
3' end seq. ID	SFI194Z
3' end seq.	>SFI194Z.Seq NNNNNNNNNNGAAGGTNTTGAANAAATAAAAAAGCAAGGTGGTAAGGTCGTCATTGGTGG TAATAAACTCGANATCAGTGGTGGAAACTTTGTTGAACCAACCGTCGTTGCCATTGAACA TGATGCTCCAATNGTAAANACTGAACTNTTTGTTCCAATTNTNTACATAATGAAATTCAA AAATNTTGACGATGCTTTTGCCTGGAATAATGAAGTCCCNCAAGGTNTNTCATNTTCCCT NTTCACAAACAATCAAAANAATATCTTCAAATGGCTTGGACCNACCGGATCTGACTGTGG NATAGTTAACGTAAATGNAGCTACNAACGGTGCTGAAATTGGTGGNGCCNTTGGAGGTGA AAAAAAGACCGGAGGTGGTANANAATCTGGCNCAGACAGCTGGAAACAGTATTGCCGTCG TAGNACTAANACNATCAACTATGGTAANACTANGCCNTTATCNCAAGGNATCNATTTTAA CTAAAATTACCNAAAAAAAAAAACCAAATGTAACTTACATAACATAAATAAAAGAA
Length of 3' end seq.	536
Connected seq. ID	SFI194P
Connected seq.	>SFI194P.Seq ACTGTTGGCCTACTGGNACTTCACAAAAAACATTTTCTAATAAAACAGNATAAATTAAAA AATGACTACCTTTAACGAATATCCATTCTTGGCTGAATTAGGCATTAAAGCTGAAAATAA TGATGGAGTCTTCAATGGAAAATGGGGAGGTGCTGGTGAAATCATCAAATGTTTAAATCC AACAAATAATAAAGTTATTGCAACTGTTAGAGGTGCTGCACCAGAAGAATATGAAACATG TATTCAAGCAATGTTAGCAGCAAAAGTAAAATGGGCATTAACACCAGCTCCAAGAAGAGG TGAAATTGTTAGATTAATTGGTCAAGCCATGAGAGAAAAAATTGAACCATTATCAAAATT AATTTCATTAGAAATGGGTAAAATTTACATTGAAGCTAAAGGTGAAGTACAAGAATTCAT TGACGTATGCGATTATGCAACTGGTTTAAGTAGATCAATCAATGGTCAAGTGATGCCATC TGAACGTCCAAATCACATTTTAATGGAAACCTGGAATCCATTAGGTTTAGTTGGTATCAT TACTGCTTTCAATTTCCCATGTGCCGTACTTGGTTGGAATGCTGCAATCTCAATGATTTG CGGTAACGT----------GAAGGTNTTGAANAAATAAAAAAGCAAGGTGGTAAGGTCGT CATTGGTGGTAATAAACTCGANATCAGTGGTGGAAACTTTGTTGAACCAACCGTCGTTGC CATTGAACATGATGCTCCAATNGTAAANACTGAACTNTTTGTTCCAATTNTNTACATAAT GAAATTCAAAAATNTTGACGATGCTTTTGCCTGGAATAATGAAGTCCCNCAAGGTNTNTC ATNTTCCCTNTTCACAAACAATCAAAANAATATCTTCAAATGGCTTGGACCNACCGGATC TGACTGTGGNATAGTTAACGTAAATGNAGCTACNAACGGTGCTGAAATTGGTGGNGCCNT TGGAGGTGAAAAAAAGACCGGAGGTGGTANANAATCTGGCNCAGACAGCTGGAAACAGTA TTGCCGTCGTAGNACTAANACNATCAACTATGGTAANACTANGCCNTTATCNCAAGGNAT CNATTTTAACTAAAATTACCNAAAAAAAAAAACCAAATGTAACTTACATAACATAAATAA AAGAA
Length of connected seq.	1135
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas