SFI166
Library SF
(Link to library)
Clone ID SFI166
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16382-1
Original site URL
Representative seq. ID SFI166P
(Link to Original site)
Representative DNA sequence
>SFI166 (SFI166Q) /CSM/SF/SFI1-C/SFI166Q.Seq.d/
ACTGTTGGCCTACTGGNATTTCTTAAAACAAATAAATTAAATTAAATAAAAAATAAAAAT
GGATGGTGAAGATGTTCAAGCTTTAGTTATTGATAACGGTTCTGGTATGTGTAAAGCCGG
TTTTGCTGGTGACGATGCTCCACGTGCTGTTTTCCCATCAATTGTTGGTCGTCCAAGACA
CACTGGTGTTATGGTTGGTATGGGTCAAAAAGACTCATATGTAGGTGATGAAGCCCAATC
AAAGAGAGGTATCTTAACCCTCAAATACCCAATTGAACACGGTATCGTTACCAACTGGGA
TGATATGGAAAAAATCTGGCATCATACTTTCTACAATGAACTCCGTGTTGCACCAGAAGA
ACACCCAGTTCTCTTAACCGAAGCTCCATTAAATCCAAAAGCCAACAGAGAAAAAATGAC
CCAAATTATGTTTGAAACCTTCAACACCCCAGCCATGTACGTTGCCATTCAAGCCGTCTT
ATCCTTATATGCCTCTGGTCGTACCACCGGTATTGTTATGGATTCAGGTGATGGTGTCTC
CCACACTGTACCAATCTATGAAGGTTATGCCTTACCACATGCCATCTTAXXXXXXXXXXC
CAGGTATTNCTGATNGTATGAACAAAAAATTAACTGCTTTAGCCCCNTCAACCATGAAAA
TTAAAATCNTTGCTCCNCCANAACGTAAANACNCNGTCTGGATTGGTGGATNTATTTTAG
CTTCNCTNTCAACNTTCCAACAAATNTGGATCNCAAAAAAANAATAT
sequence update 2001.11.22
Translated Amino Acid sequence
llaywxflkqin*ik*KIKMDGEDVQALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRH
TGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEE
HPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVS
HTVPIYEGYALPHAIL---

---PGIXDXMNKKLTALAPSTMKIKIXAPPXRKXXVWIGGXILASLSTFQQXWIXKKXY


Translated Amino Acid sequence (All Frames)
Frame A:
tvgllxflktnkln*iknkngw*rcssfsy**rfwyv*srfcw*rcstccfpincwsskt
hwcygwygskrlicr**spikerylnpqipn*tryryqlg*ygknlasyflq*tpcctrr
tpsslnrssiksksqqrkndpnyv*nlqhpshvrchssrliliclwsyhrycygfr*wcl
phctnl*rlclttchl---

---PGIXDXMNKKLTALAPSTMKIKIXAPPXRKXXVWIGGXILASLSTFQQXWIXKKXY

Frame B:
llaywxflkqin*ik*KIKMDGEDVQALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRH
TGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEE
HPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVS
HTVPIYEGYALPHAIL---

---qvxlxv*tkn*ll*pxqp*klksllxxnvxtxsglvdxf*lxxqxsnkxgsqkxn

Frame C:
cwptgis*nk*iklnkk*kwmvkmfkl*llitvlvcvkpvllvtmlhvlfshqllvvqdt
lvlwlvwvkkthm*vmkpnqrevs*psntqlntvslptgmiwkksgiilstmnsvlhqkn
tqfs*pklh*iqkptekk*pklclkpstpqpctlpfkpsypymplvvppvllwiqvmvsp
tlyqsmkvmpyhmps---

---ryx*xyeqkincfspxnhen*nxcsxxt*xxxldwwxyfsfxxnxptnxdxkkxi

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFM527 (VFM527Q) /CSM/VF/VFM5-B/VFM527Q.Seq.d/ 1049 0.0
VFL353 (VFL353Q) /CSM/VF/VFL3-C/VFL353Q.Seq.d/ 1049 0.0
VFL311 (VFL311Q) /CSM/VF/VFL3-A/VFL311Q.Seq.d/ 1049 0.0
VFK419 (VFK419Q) /CSM/VF/VFK4-A/VFK419Q.Seq.d/ 1049 0.0
VFK366 (VFK366Q) /CSM/VF/VFK3-C/VFK366Q.Seq.d/ 1049 0.0
VFK110 (VFK110Q) /CSM/VF/VFK1-A/VFK110Q.Seq.d/ 1049 0.0
VFJ294 (VFJ294Q) /CSM/VF/VFJ2-D/VFJ294Q.Seq.d/ 1049 0.0
VFI680 (VFI680Q) /CSM/VF/VFI6-D/VFI680Q.Seq.d/ 1049 0.0
SLH494 (SLH494Q) /CSM/SL/SLH4-D/SLH494Q.Seq.d/ 1049 0.0
SLH344 (SLH344Q) /CSM/SL/SLH3-B/SLH344Q.Seq.d/ 1049 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

M14146|M14146.1 D.discoideum actin 15 gene, complete cds. 1049 0.0 1
AC115579|AC115579.2 Dictyostelium discoideum chromosome 2 map 4915084-5005461 strain AX4, complete sequence. 1049 0.0 1
X03281|X03281.1 Dictyostelium discoideum gene for actin A8. 961 0.0 2
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 946 0.0 4
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence. 898 0.0 6
U25660|U25660.1 Dictyostelium discoideum actin gene, partial cds. 1017 0.0 1
AC115577|AC115577.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence. 841 0.0 8
AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence. 827 0.0 7
X03282|X03282.1 dictyostelium discoideum gene for actin A12. 779 0.0 2
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 771 0.0 2
dna update 2003.12.16
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AY280960_1(AY280960|pid:none) Homo sapiens actin alpha 1 skeleta... 304 e-101
(Q54H30) RecName: Full=Major actin; AltName: Full=Actin-1; AltNa... 365 e-100
(Q553U6) RecName: Full=Putative actin-22; &AC116305_3(AC116305|... 365 e-100
(P02576) RecName: Full=Actin, plasmodial isoform; &ATFY(A29044;... 363 2e-99
ATDO(A93223;A92871;S67999;A03004)actin - slime mold (Dictyosteli... 363 3e-99
B23412(B23412)actin 12 - slime mold (Dictyostelium discoideum) 359 6e-98
X03282_1(X03282|pid:none) dictyostelium discoideum gene for acti... 357 2e-97
AY294152_1(AY294152|pid:none) Mayorella sp. JJP-2003 actin mRNA,... 357 2e-97
AY294154_1(AY294154|pid:none) Thecamoeba similis actin mRNA, com... 356 4e-97
(P02578) RecName: Full=Actin-1; &ATAX(A92886;A03004) &V00002_1(... 356 5e-97
protein update 2009. 5.25
PSORT

psg: 0.75 gvh: 0.34 alm: 0.42 top: 0.53 tms: 0.00 mit: 0.14 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: nuclear
40.0 %: cytoplasmic
4.0 %: cytoskeletal
4.0 %: vacuolar
4.0 %: mitochondrial
4.0 %: peroxisomal

>> prediction for SFI166 is nuc

5' end seq. ID SFI166F
5' end seq.
>SFI166F.Seq
ACTGTTGGCCTACTGGNATTTCTTAAAACAAATAAATTAAATTAAATAAAAAATAAAAAT
GGATGGTGAAGATGTTCAAGCTTTAGTTATTGATAACGGTTCTGGTATGTGTAAAGCCGG
TTTTGCTGGTGACGATGCTCCACGTGCTGTTTTCCCATCAATTGTTGGTCGTCCAAGACA
CACTGGTGTTATGGTTGGTATGGGTCAAAAAGACTCATATGTAGGTGATGAAGCCCAATC
AAAGAGAGGTATCTTAACCCTCAAATACCCAATTGAACACGGTATCGTTACCAACTGGGA
TGATATGGAAAAAATCTGGCATCATACTTTCTACAATGAACTCCGTGTTGCACCAGAAGA
ACACCCAGTTCTCTTAACCGAAGCTCCATTAAATCCAAAAGCCAACAGAGAAAAAATGAC
CCAAATTATGTTTGAAACCTTCAACACCCCAGCCATGTACGTTGCCATTCAAGCCGTCTT
ATCCTTATATGCCTCTGGTCGTACCACCGGTATTGTTATGGATTCAGGTGATGGTGTCTC
CCACACTGTACCAATCTATGAAGGTTATGCCTTACCACATGCCATCTTA----------
Length of 5' end seq. 589
3' end seq. ID SFI166Z
3' end seq.
>SFI166Z.Seq
NNNNNNNNNNCCAGGTATTNCTGATNGTATGAACAAAAAATTAACTGCTTTAGCCCCNTC
AACCATGAAAATTAAAATCNTTGCTCCNCCANAACGTAAANACNCNGTCTGGATTGGTGG
ATNTATTTTAGCTTCNCTNTCAACNTTCCAACAAATNTGGATCNCAAAAAAANAATAT
Length of 3' end seq. 178
Connected seq. ID SFI166P
Connected seq.
>SFI166P.Seq
ACTGTTGGCCTACTGGNATTTCTTAAAACAAATAAATTAAATTAAATAAAAAATAAAAAT
GGATGGTGAAGATGTTCAAGCTTTAGTTATTGATAACGGTTCTGGTATGTGTAAAGCCGG
TTTTGCTGGTGACGATGCTCCACGTGCTGTTTTCCCATCAATTGTTGGTCGTCCAAGACA
CACTGGTGTTATGGTTGGTATGGGTCAAAAAGACTCATATGTAGGTGATGAAGCCCAATC
AAAGAGAGGTATCTTAACCCTCAAATACCCAATTGAACACGGTATCGTTACCAACTGGGA
TGATATGGAAAAAATCTGGCATCATACTTTCTACAATGAACTCCGTGTTGCACCAGAAGA
ACACCCAGTTCTCTTAACCGAAGCTCCATTAAATCCAAAAGCCAACAGAGAAAAAATGAC
CCAAATTATGTTTGAAACCTTCAACACCCCAGCCATGTACGTTGCCATTCAAGCCGTCTT
ATCCTTATATGCCTCTGGTCGTACCACCGGTATTGTTATGGATTCAGGTGATGGTGTCTC
CCACACTGTACCAATCTATGAAGGTTATGCCTTACCACATGCCATCTTA----------C
CAGGTATTNCTGATNGTATGAACAAAAAATTAACTGCTTTAGCCCCNTCAACCATGAAAA
TTAAAATCNTTGCTCCNCCANAACGTAAANACNCNGTCTGGATTGGTGGATNTATTTTAG
CTTCNCTNTCAACNTTCCAACAAATNTGGATCNCAAAAAAANAATAT
Length of connected seq. 757
Full length Seq ID -
Full length Seq. -
Length of full length seq. -