SFI151
Library SF
(Link to library)
Clone ID SFI151
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16313-1
Original site URL
Representative seq. ID SFI151P
(Link to Original site)
Representative DNA sequence
>SFI151 (SFI151Q) /CSM/SF/SFI1-C/SFI151Q.Seq.d/
ACTGTTGGCCTACTGGTTTAAATTCATTGATTACCCATTGTACTGATTGCCCAGGNAATT
GGATGTACTACTACAGATTTTTGCTTCCAACAAGTTTGCTCTGCAACTGATGGAGATGTT
TGTACAACAGTTCCATTGAATTGTGATGATGGCTTACAGTGTACAGTTGATAGTTGTATT
GGACCAATGGGTGTTTGTAGTCATATAGCTATTGCACCAAAATGTTTAGAATGCGCATTG
GAACCATGTATTACAACAGATAATTGTCAACCAGTTATTTGTGGTCCAGATGGACGTTGT
ATCCAAGAGACAATTGAAGATTTTTGTGATGATTATAATTATTGCACTGTTGATACATGC
ACAGGAGTAGGTTGTGAACATGCTTCAATTTCAGGTTGTCGTAATTGTACAAATGGAATT
GGGTNTGTACAACACCATCAGATGATGCATGTAATTTACAAGTATGTTCTGAAAXXXXXX
XXXXTTTAAATTGTGATGATAATAACGATTGTACTGAAGATAAGTGTTTAAATACTGGTA
TTTGTCAAAATAATCCAATTGACGGTTGTGTTACACCATCACCAGTTTCAATTGGTGGAA
CTATCCCTCCAACCACTACTGGTGTATCACAAGTTGAGTGTGATTGTTGTCCAATTGGTC
AAAAATGTTTATTAGTCAATGGTCATGAAATTTGTATTAAACCAGCAACCACTGGTGGTA
TTCCAGAATTAACTACTGGTTGTGCTGGTACAACAACTGGCAGGGCTACAGGTCATTACA
CAGAATCAGGTACAGGTAATCCACATTTATGTGATAGATATCATTGTAAAAGAGGAATGG
AATGTCATGTTGTTAATGGTGTTCCAGAATGTTTACCATCAAACTACAAATGTTTAGATT
GTTTAGATCTTCATTGTGAGAGACAAGGTGATTTCACCTGTTTTATGGTTAAAAATCCAA
ATTTCATTTCTAGTAAACATAGTTGTTATGGTGAATCATGTTGTAAATTCACACCAGTTT
GCAAACCAAAAGGACACTCACTTTAAAAAAAACTAAAATTAATATATTATTTCTTTTCTT
TTTATTATATATTTTTATTAAAATTTTATAACCAAGTCAACTAATTTCAATTTAATATTA
CAATATAAACATTAAGTTTATTGTAAAATTTAATAATAAATAAAAAAAACAACGCCCCAT
TAAACAAA
sequence update 2001.11.22
Translated Amino Acid sequence
tvgllv*ih*LPIVLIAQXIGCTTTDFCFQQVCSATDGDVCTTVPLNCDDGLQCTVDSCI
GPMGVCSHIAIAPKCLECALEPCITTDNCQPVICGPDGRCIQETIEDFCDDYNYCTVDTC
TGVGCEHASISGCRNCTNGIGXVQHHQMMHVIYKYVLK---

---LNCDDNNDCTEDKCLNTGICQNNPIDGCVTPSPVSIGGTIPPTTTGVSQVECDCCPI
GQKCLLVNGHEICIKPATTGGIPELTTGCAGTTTGRATGHYTESGTGNPHLCDRYHCKRG
MECHVVNGVPECLPSNYKCLDCLDLHCERQGDFTCFMVKNPNFISSKHSCYGESCCKFTP
VCKPKGHSL*kklkliyyffsfyyifllkfynqvn*fqfniti*tlsll*nliinkknna
plnk


Translated Amino Acid sequence (All Frames)
Frame A:
tvgllv*ih*LPIVLIAQXIGCTTTDFCFQQVCSATDGDVCTTVPLNCDDGLQCTVDSCI
GPMGVCSHIAIAPKCLECALEPCITTDNCQPVICGPDGRCIQETIEDFCDDYNYCTVDTC
TGVGCEHASISGCRNCTNGIGXVQHHQMMHVIYKYVLK---

---fkl****rly*r*vfkywylsk*sn*rlcytitsfnwwnypsnhywcits*v*llsn
wskmfisqws*nly*tsnhwwysrinywlcwynnwqgyrslhriryr*stfm**isl*kr
ngmscc*wcsrmftiklqmfrlfrssl*etr*fhlfyg*kskfhf**t*llw*iml*iht
slqtkrtltlkktkinilflffllyifikil*psqlisi*yyninikfivkfnnk*kkqr
pikq

Frame B:
llaywfkfidyply*lprxldvllqifasnkfalqlmemfvqqfh*ivmmaysvqlivvl
dqwvfvvi*llhqnv*nahwnhvlqqiivnqlfvvqmdvvskrqlkifvmiiiialliha
qe*vvnmlqfqvvvivqmelgxyntir*cm*ftsmf*---

---LNCDDNNDCTEDKCLNTGICQNNPIDGCVTPSPVSIGGTIPPTTTGVSQVECDCCPI
GQKCLLVNGHEICIKPATTGGIPELTTGCAGTTTGRATGHYTESGTGNPHLCDRYHCKRG
MECHVVNGVPECLPSNYKCLDCLDLHCERQGDFTCFMVKNPNFISSKHSCYGESCCKFTP
VCKPKGHSL*kklkliyyffsfyyifllkfynqvn*fqfniti*tlsll*nliinkknna
plnk

Frame C:
cwptglnslithctdcpgnwmyyyrfllptsllcn*wrclynssiel**wltvys**lyw
tngcl*sysyctkmfrmrigtmyynr*lstsylwsrwtlyprdn*rfl**l*llhc*ymh
rsrl*tcfnfrls*lykwnwvcttpsddacnlqvcse---

---*ivmiitivlkisv*ilvfvkiiqltvvlhhhqfqlvelslqpllvyhklsvivvql
vknvy*smvmkfvlnqqplvvfqn*llvvlvqqlaglqvitqnqvqvihiyvidiivkee
wnvmllmvfqnvyhqttnv*iv*ifivrdkvispvlwlkiqisflvnivvmvnhvvnshq
fanqkdthfkkn*n*yiisflfiiyfy*nfitkstnfnlilqykh*vycki***ikkttp
h*t

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SHL169 (SHL169Q) /CSM/SH/SHL1-C/SHL169Q.Seq.d/ 1110 0.0
SHK884 (SHK884Q) /CSM/SH/SHK8-D/SHK884Q.Seq.d/ 1110 0.0
SHK535 (SHK535Q) /CSM/SH/SHK5-B/SHK535Q.Seq.d/ 1110 0.0
SHJ893 (SHJ893Q) /CSM/SH/SHJ8-D/SHJ893Q.Seq.d/ 1110 0.0
SHJ886 (SHJ886Q) /CSM/SH/SHJ8-D/SHJ886Q.Seq.d/ 1110 0.0
SHJ668 (SHJ668Q) /CSM/SH/SHJ6-C/SHJ668Q.Seq.d/ 1110 0.0
SHG737 (SHG737Q) /CSM/SH/SHG7-B/SHG737Q.Seq.d/ 1110 0.0
SHG326 (SHG326Q) /CSM/SH/SHG3-B/SHG326Q.Seq.d/ 1110 0.0
SHG163 (SHG163Q) /CSM/SH/SHG1-C/SHG163Q.Seq.d/ 1110 0.0
SHF835 (SHF835Q) /CSM/SH/SHF8-B/SHF835Q.Seq.d/ 1110 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence. 36 0.029 14
BD097410|BD097410.1 Nucleic acid sequences characterized by their enhanced expression in good prognostic human neuroblastoma upon comparison between good prognostic human neuroblastoma and poor prognostic human neuroblastoma. 36 0.082 3
BD083763|BD083763.1 Nucleic acid sequence characterized in that expression is potentiated in human neuroblastoma with good prognosis, in comparion between human neuroblastoma with good prognosis and human neuroblastoma with bad prognosis. 36 0.082 3
AL161506|AL161506.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 18. 42 0.093 4
AC025368|AC025368.1 Homo sapiens chromosome 13 clone RP11-270C9 map 13, LOW-PASS SEQUENCE SAMPLING. 40 0.13 3
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 30 0.14 21
AC116330|AC116330.2 Dictyostelium discoideum chromosome 2 map 3191214-3323468 strain AX4, complete sequence. 42 0.19 8
AL357653|AL357653.5 Human DNA sequence *** SEQUENCING CANCELLED *** from clone RP11-311E14. 36 0.52 6
AF160181|AF160181.1 Arabidopsis thaliana BAC T14A16. 42 0.54 2
AC146549|AC146549.5 Medicago truncatula clone mth2-7p18, WORKING DRAFT SEQUENCE, 3 ordered pieces. 38 0.57 4
dna update 2003.12.16
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54C31) RecName: Full=Protein psiR; Flags: Precursor; 350 e-175
(Q54C32) RecName: Full=Protein psiQ; Flags: Precursor; 186 3e-90
(Q1ZXC5) RecName: Full=Protein psiC; Flags: Precursor; 69 3e-10
AC116984_103(AC116984|pid:none) Dictyostelium discoideum chromos... 69 3e-10
(Q54G85) RecName: Full=Protein psiJ; Flags: Precursor; 67 1e-09
S44208(S44208) extracellular matrix protein B - Dictyostelium mi... 64 6e-09
(P11976) RecName: Full=Prestalk protein; AltName: Full=Extracell... 64 8e-09
A26838(A26838)prestalk protein precursor - slime mold (Dictyoste... 64 8e-09
AC117072_61(AC117072|pid:none) Dictyostelium discoideum chromoso... 63 2e-08
(Q54CH8) RecName: Full=Protein psiN; Flags: Precursor; 60 1e-07
protein update 2009. 5.25
PSORT

psg: 0.88 gvh: 0.59 alm: 0.38 top: 0.27 tms: 0.00 mit: 0.26 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

28.0 %: extracellular, including cell wall
28.0 %: cytoplasmic
16.0 %: nuclear
8.0 %: vacuolar
8.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: endoplasmic reticulum
4.0 %: vesicles of secretory system

>> prediction for SFI151 is exc

5' end seq. ID SFI151F
5' end seq.
>SFI151F.Seq
ACTGTTGGCCTACTGGTTTAAATTCATTGATTACCCATTGTACTGATTGCCCAGGNAATT
GGATGTACTACTACAGATTTTTGCTTCCAACAAGTTTGCTCTGCAACTGATGGAGATGTT
TGTACAACAGTTCCATTGAATTGTGATGATGGCTTACAGTGTACAGTTGATAGTTGTATT
GGACCAATGGGTGTTTGTAGTCATATAGCTATTGCACCAAAATGTTTAGAATGCGCATTG
GAACCATGTATTACAACAGATAATTGTCAACCAGTTATTTGTGGTCCAGATGGACGTTGT
ATCCAAGAGACAATTGAAGATTTTTGTGATGATTATAATTATTGCACTGTTGATACATGC
ACAGGAGTAGGTTGTGAACATGCTTCAATTTCAGGTTGTCGTAATTGTACAAATGGAATT
GGGTNTGTACAACACCATCAGATGATGCATGTAATTTACAAGTATGTTCTGAAA------
----
Length of 5' end seq. 474
3' end seq. ID SFI151Z
3' end seq.
>SFI151Z.Seq
NNNNNNNNNNTTTAAATTGTGATGATAATAACGATTGTACTGAAGATAAGTGTTTAAATA
CTGGTATTTGTCAAAATAATCCAATTGACGGTTGTGTTACACCATCACCAGTTTCAATTG
GTGGAACTATCCCTCCAACCACTACTGGTGTATCACAAGTTGAGTGTGATTGTTGTCCAA
TTGGTCAAAAATGTTTATTAGTCAATGGTCATGAAATTTGTATTAAACCAGCAACCACTG
GTGGTATTCCAGAATTAACTACTGGTTGTGCTGGTACAACAACTGGCAGGGCTACAGGTC
ATTACACAGAATCAGGTACAGGTAATCCACATTTATGTGATAGATATCATTGTAAAAGAG
GAATGGAATGTCATGTTGTTAATGGTGTTCCAGAATGTTTACCATCAAACTACAAATGTT
TAGATTGTTTAGATCTTCATTGTGAGAGACAAGGTGATTTCACCTGTTTTATGGTTAAAA
ATCCAAATTTCATTTCTAGTAAACATAGTTGTTATGGTGAATCATGTTGTAAATTCACAC
CAGTTTGCAAACCAAAAGGACACTCACTTTAAAAAAAACTAAAATTAATATATTATTTCT
TTTCTTTTTATTATATATTTTTATTAAAATTTTATAACCAAGTCAACTAATTTCAATTTA
ATATTACAATATAAACATTAAGTTTATTGTAAAATTTAATAATAAATAAAAAAAACAACG
CCCCATTAAACAAA
Length of 3' end seq. 734
Connected seq. ID SFI151P
Connected seq.
>SFI151P.Seq
ACTGTTGGCCTACTGGTTTAAATTCATTGATTACCCATTGTACTGATTGCCCAGGNAATT
GGATGTACTACTACAGATTTTTGCTTCCAACAAGTTTGCTCTGCAACTGATGGAGATGTT
TGTACAACAGTTCCATTGAATTGTGATGATGGCTTACAGTGTACAGTTGATAGTTGTATT
GGACCAATGGGTGTTTGTAGTCATATAGCTATTGCACCAAAATGTTTAGAATGCGCATTG
GAACCATGTATTACAACAGATAATTGTCAACCAGTTATTTGTGGTCCAGATGGACGTTGT
ATCCAAGAGACAATTGAAGATTTTTGTGATGATTATAATTATTGCACTGTTGATACATGC
ACAGGAGTAGGTTGTGAACATGCTTCAATTTCAGGTTGTCGTAATTGTACAAATGGAATT
GGGTNTGTACAACACCATCAGATGATGCATGTAATTTACAAGTATGTTCTGAAA------
----TTTAAATTGTGATGATAATAACGATTGTACTGAAGATAAGTGTTTAAATACTGGTA
TTTGTCAAAATAATCCAATTGACGGTTGTGTTACACCATCACCAGTTTCAATTGGTGGAA
CTATCCCTCCAACCACTACTGGTGTATCACAAGTTGAGTGTGATTGTTGTCCAATTGGTC
AAAAATGTTTATTAGTCAATGGTCATGAAATTTGTATTAAACCAGCAACCACTGGTGGTA
TTCCAGAATTAACTACTGGTTGTGCTGGTACAACAACTGGCAGGGCTACAGGTCATTACA
CAGAATCAGGTACAGGTAATCCACATTTATGTGATAGATATCATTGTAAAAGAGGAATGG
AATGTCATGTTGTTAATGGTGTTCCAGAATGTTTACCATCAAACTACAAATGTTTAGATT
GTTTAGATCTTCATTGTGAGAGACAAGGTGATTTCACCTGTTTTATGGTTAAAAATCCAA
ATTTCATTTCTAGTAAACATAGTTGTTATGGTGAATCATGTTGTAAATTCACACCAGTTT
GCAAACCAAAAGGACACTCACTTTAAAAAAAACTAAAATTAATATATTATTTCTTTTCTT
TTTATTATATATTTTTATTAAAATTTTATAACCAAGTCAACTAATTTCAATTTAATATTA
CAATATAAACATTAAGTTTATTGTAAAATTTAATAATAAATAAAAAAAACAACGCCCCAT
TAAACAAA
Length of connected seq. 1198
Full length Seq ID -
Full length Seq. -
Length of full length seq. -