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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFI146
Library SF
(Link to library)
Clone ID SFI146
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U10808-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>SFI146 (SFI146Q) /CSM/SF/SFI1-B/SFI146Q.Seq.d/
XXXXXXXXXXCTNAAGTTCTTTGTTCAGTNAATGCTGGTAAATCTTTATAGTTTAAACAC
CATATCAGCTGGTGGTGGATTGATTTTATCCCAATCGATCTACTTTCATTGTATTCTTTA
ANAAACGGGTAAACAATCTTGTTGATANANGGTACTTCNTTGNTTANGNATTCATTCTTT
ACTGGGTCANTTGGTGCAGNG
sequence update 2001.11.22
Translated Amino Acid sequence 
---xsslfsxcw*ifiv*tpyqlvvd*FYPNRSTFIVFFXKRVNNLVDXXYFXXXXFILY
WVXWCX
Translated Amino Acid sequence (All Frames) 
Frame A:
---xsslfsxcw*ifiv*tpyqlvvd*FYPNRSTFIVFFXKRVNNLVDXXYFXXXXFILY
WVXWCX


Frame B:
---xvlcsvnagksl*fkhhiswwwidfipidllslyslxng*tillixgtslxxxsfft
gsxgax


Frame C:
---kffvqxmlvnlyslntisaggglilsqsiyfhcil*xtgkqsc*xxvlxxlxihsll
gxlvq
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFI146 (SFI146Q) /CSM/SF/SFI1-B/SFI146Q.Seq.d/                        315   1e-85
VSJ366 (VSJ366Q) /CSM/VS/VSJ3-C/VSJ366Q.Seq.d/                        212   1e-54
VFK661 (VFK661Q) /CSM/VF/VFK6-C/VFK661Q.Seq.d/                        212   1e-54
VFJ586 (VFJ586Q) /CSM/VF/VFJ5-D/VFJ586Q.Seq.d/                        212   1e-54
VFA701 (VFA701Q) /CSM/VF/VFA7-A/VFA701Q.Seq.d/                        212   1e-54
SSG303 (SSG303Q) /CSM/SS/SSG3-A/SSG303Q.Seq.d/                        212   1e-54
SSA730 (SSA730Q) /CSM/SS/SSA7-B/SSA730Q.Seq.d/                        212   1e-54
SFL334 (SFL334Q) /CSM/SF/SFL3-B/SFL334Q.Seq.d/                        212   1e-54
SFL292 (SFL292Q) /CSM/SF/SFL2-D/SFL292Q.Seq.d/                        212   1e-54
SFL258 (SFL258Q) /CSM/SF/SFL2-C/SFL258Q.Seq.d/                        212   1e-54
own update 2001.11.26
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF150929|AF150929.1 Dictyostelium discoideum UDP-glucose pyrophosphorylase 2 (UDPGP2) mRNA, complete cds.    82   1e-47  4
BM475383|BM475383.1 AGENCOURT_6477946 NIH_MGC_67 Homo sapiens cDNA clone IMAGE:5578792 5', mRNA sequence.    32   0.12   2
AQ571970|AQ571970.1 HS_2102_B1_E06_T7C CIT Approved Human Genomic Sperm Library D Homo sapiens genomic clone Plate=2102 Col=11 Row=J, genomic survey sequence.    44   0.67   1
BH137398|BH137398.1 ENTOL65TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    38   6.3    2
dna update 2003.12.16
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54YZ0) RecName: Full=UTP--glucose-1-phosphate uridylyltransfer...    45   6e-04
protein update 2009. 1.11
PSORT 

 psg: 0.95  gvh: 0.35  alm: 0.45  top: 0.47  tms: 0.00  mit: 0.39  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 28.0 %: cytoplasmic
	 28.0 %: mitochondrial
	 28.0 %: nuclear
	  8.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: peroxisomal

>> prediction for SFI146 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SFI146Z
3' end seq. 
>SFI146Z.Seq
NNNNNNNNNNCTNAAGTTCTTTGTTCAGTNAATGCTGGTAAATCTTTATAGTTTAAACAC
CATATCAGCTGGTGGTGGATTGATTTTATCCCAATCGATCTACTTTCATTGTATTCTTTA
ANAAACGGGTAAACAATCTTGTTGATANANGGTACTTCNTTGNTTANGNATTCATTCTTT
ACTGGGTCANTTGGTGCAGNG
Length of 3' end seq. 201
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -