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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFI142
Library SF
(Link to library)
Clone ID SFI142
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13888-1
Original site URL
Representative seq. ID SFI142P
(Link to Original site)
Representative DNA sequence 
>SFI142 (SFI142Q) /CSM/SF/SFI1-B/SFI142Q.Seq.d/
ACTGTTGGCCTACTGGNATTTTTTTTTATTTTTATTTTCACAACTAATAACAGNACTAAA
TTAATAAAAATAAAAATAAAAATAAACAAACCAAATTAAAAATATTAAATAAAATGGAAT
CTAACACAAATTCTCAAGGACAAGGTATTATTCCTCAATCATATCATTCATCAATTTTCT
TTTCAATTTCAAAAGGATCTGATAAGATTGGTGGATTATTAGAGTATTTAGAGATTATTA
AAAAACATAATATCAACATTACAAGAATTGAATCAAGACCATCAAAAACCGAAAAAAAAG
ATTATGATTTCTTTTTAGATTTAGAATATCCAACAGAAAACAATAAAGAAGTTGAAAAGG
TTATTAAAGATCTCGAAGAAAAAGGTGTAAAAGCTACAACCCTTCAAGAAAGTTCAAACC
AAACTTATGCTCCATGGTTTCCAAGAAAAATTTCAGATTTAGATTTATTTGCAAATAAAG
TATTAGAAATGGGATCAGATTTAACTTCAGATCATCCAGGTGCTTCAGATCCAGTTTACA
GAGAAAXXXXXXXXXXTTCGTCCAGTACAAGGTTTACTCTCTGCTAGAGATTTCTTAAAT
GGTTTAGCTTTCCGTGTATTCCATGCAACTCAATATATTAGACATCCATCCGTACCATTA
TATACACCAGAACCAGATTGTTGTCATGAATTATTAGGTCATGTTCCATTATTAGCTGAT
CCTGATTTCGCTGATTTTAGTCAAGAGATTGGTTTAGCTTCAATTGGTGCTTCTGATGAA
GATATTCAATTACTTAGTACTTGTTATTGGTTTACAGTTGAATTTGGATTATGTAAAGAA
GGTGATACAATTAGAGCATATGGTGCAGGTATTTTATCATCAACAGGTGAAATGGAACAC
TTTTTAACTGATAAAGCAAAAAAATTACCATTTAATCCATTTGACGCATGCAATACTGAA
TATCCAATTACAACATTCCAACCACTTTACTATGTTGCAGAAAGTTTCCAAAAAGCAAAA
GAACAAATGAGACAATTTGCTGATAGCTTTAAAAAACCATTTTCAATTCGTTACAATCCA
TACACTCAATCAATTGAAATACTTGATAACAAAGATAAATTATTAAATATTTGCAATNAT
ATTAGAAATCAATC
sequence update 2001.11.22
Translated Amino Acid sequence 
cwptgiffyfyfhn**qx*INKNKNKNKQTKLKILNKMESNTNSQGQGIIPQSYHSSIFF
SISKGSDKIGGLLEYLEIIKKHNINITRIESRPSKTEKKDYDFFLDLEYPTENNKEVEKV
IKDLEEKGVKATTLQESSNQTYAPWFPRKISDLDLFANKVLEMGSDLTSDHPGASDPVYR
E---

---RPVQGLLSARDFLNGLAFRVFHATQYIRHPSVPLYTPEPDCCHELLGHVPLLADPDF
ADFSQEIGLASIGASDEDIQLLSTCYWFTVEFGLCKEGDTIRAYGAGILSSTGEMEHFLT
DKAKKLPFNPFDACNTEYPITTFQPLYYVAESFQKAKEQMRQFADSFKKPFSIRYNPYTQ
SIEILDNKDKLLNICNXIRNQ
Translated Amino Acid sequence (All Frames) 
Frame A:
tvgllxfffififttnnxtklikikikinkpn*ky*ikwnltqilkdkvlflnhiihqfs
fqfqkdlirlvdy*si*rllkniistlqelnqdhqkpkkkimisf*i*niqqktikklkr
llkiskkkv*klqpfkkvqtklmlhgfqekfqi*iylqiky*kwdqi*lqiiqvlqiqft
ek---

---fvqykvyslleis*mv*lsvysmqlnildihpyhyihqnqivvmny*vmfhy*lili
slilvkrlv*lqlvllmkifnylvlviglqlnldyvkkviqlehmvqvfyhqqvkwntf*
likqknyhlihlthailniqlqhsnhftmlqkvskkqknk*dnllialknhfqfvtihtl
nqlkylitkiny*ifaxilein

Frame B:
llaywxfflflfsqlitxln**k*k*k*tnqiknik*ngi*hkfsrtryyssiisfinfl
fnfkri**dwwiirvfrdy*kt*yqhykn*iktiknrkkrl*flfrfrisnrkq*rs*kg
y*rsrrkrcksynpsrkfkpnlcsmvskknfrfrfick*sirngirfnfrssrcfrsslq
r---

---ssstrftlc*rflkwfsfpcipcnsiy*tsirtiiytrtrlls*iirscsiis*s*f
r*f*srdwfsfnwcf**rysit*ylllvys*iwim*rr*yn*siwcryfiinr*ngtlfn
**skkiti*si*rmqy*isnynipttllccrkfpkskrtnetic**l*ktifnslqsihs
in*nt**qr*iikylqxy*ksi

Frame C:
cwptgiffyfyfhn**qx*INKNKNKNKQTKLKILNKMESNTNSQGQGIIPQSYHSSIFF
SISKGSDKIGGLLEYLEIIKKHNINITRIESRPSKTEKKDYDFFLDLEYPTENNKEVEKV
IKDLEEKGVKATTLQESSNQTYAPWFPRKISDLDLFANKVLEMGSDLTSDHPGASDPVYR
E---

---RPVQGLLSARDFLNGLAFRVFHATQYIRHPSVPLYTPEPDCCHELLGHVPLLADPDF
ADFSQEIGLASIGASDEDIQLLSTCYWFTVEFGLCKEGDTIRAYGAGILSSTGEMEHFLT
DKAKKLPFNPFDACNTEYPITTFQPLYYVAESFQKAKEQMRQFADSFKKPFSIRYNPYTQ
SIEILDNKDKLLNICNXIRNQ
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFI142 (SFI142Q) /CSM/SF/SFI1-B/SFI142Q.Seq.d/                       1907   0.0
SSM681 (SSM681Q) /CSM/SS/SSM6-D/SSM681Q.Seq.d/                       1138   0.0
SFK632 (SFK632Q) /CSM/SF/SFK6-B/SFK632Q.Seq.d/                       1138   0.0
SFK580 (SFK580Q) /CSM/SF/SFK5-D/SFK580Q.Seq.d/                       1138   0.0
SFB840 (SFB840Q) /CSM/SF/SFB8-B/SFB840Q.Seq.d/                       1138   0.0
AFI283 (AFI283Q) /CSM/AF/AFI2-D/AFI283Q.Seq.d/                       1138   0.0
AFC478 (AFC478Q) /CSM/AF/AFC4-D/AFC478Q.Seq.d/                       1138   0.0
SFK602 (SFK602Q) /CSM/SF/SFK6-A/SFK602Q.Seq.d/                       1122   0.0
SFJ456 (SFJ456Q) /CSM/SF/SFJ4-C/SFJ456Q.Seq.d/                       1122   0.0
SFJ372 (SFJ372Q) /CSM/SF/SFJ3-C/SFJ372Q.Seq.d/                       1122   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BG225890|0    90   8e-14  1
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    36   5e-07  22
AP006628|AP006628.1 Onion yellows phytoplasma DNA, complete genome.    38   4e-04  21
AP003188|AP003188.2 Clostridium perfringens DNA, complete genome, section 4/10.    40   0.001  14
AC115598|AC115598.2 Dictyostelium discoideum chromosome 2 map 581427-735498 strain AX4, complete sequence.    36   0.017  14
AL671873|AL671873.15 Mouse DNA sequence from clone RP23-382D17 on chromosome X.    42   0.017  2
CC139550|CC139550.1 NDL.48G14.SP6 Notre Dame Liverpool Aedes aegypti genomic clone NDL.48G14, DNA sequence.    52   0.017  1
CC852580|CC852580.1 NDL.130C7.T7 Notre Dame Liverpool Aedes aegypti genomic clone NotreDame Liverpool-130C7, genomic survey sequence.    52   0.017  1
AC016647|AC016647.7 Homo sapiens chromosome 16 clone RP11-89G14, complete sequence.    40   0.018  9
BU770913| (AF031034) tryptophan hydroxylase; SmTPH [Schistosoma mansoni], mRNA sequence.    48   0.020  2
dna update 2003.12.16
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54XS1) RecName: Full=Probable phenylalanine-4-hydroxylase;    ...   410   e-113
BC056537_1(BC056537|pid:none) Danio rerio phenylalanine hydroxyl...   278   2e-73
AY330224_1(AY330224|pid:none) Danio rerio Pah mRNA, complete cds...   278   2e-73
AY615523_1(AY615523|pid:none) Gallus gallus neuronal tryptophan ...   270   7e-71
BC013458_1(BC013458|pid:none) Mus musculus phenylalanine hydroxy...   268   2e-70
EU730760_1(EU730760|pid:none) Micropogonias undulatus tryptophan...   267   4e-70
(Q8IWU9) RecName: Full=Tryptophan 5-hydroxylase 2;          EC=1...   267   6e-70
BC114499_1(BC114499|pid:none) Homo sapiens tryptophan hydroxylas...   267   6e-70
BC114442_1(BC114442|pid:none) Homo sapiens tryptophan hydroxylas...   267   6e-70
(Q2HZ26) RecName: Full=Tryptophan 5-hydroxylase 2;          EC=1...   267   6e-70
protein update 2009. 5.25
PSORT 

 psg: 0.58  gvh: 0.35  alm: 0.43  top: 0.53  tms: 0.00  mit: 0.29  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 28.0 %: nuclear
	 16.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for SFI142 is cyt
5' end seq. ID SFI142F
5' end seq. 
>SFI142F.Seq
ACTGTTGGCCTACTGGNATTTTTTTTTATTTTTATTTTCACAACTAATAACAGNACTAAA
TTAATAAAAATAAAAATAAAAATAAACAAACCAAATTAAAAATATTAAATAAAATGGAAT
CTAACACAAATTCTCAAGGACAAGGTATTATTCCTCAATCATATCATTCATCAATTTTCT
TTTCAATTTCAAAAGGATCTGATAAGATTGGTGGATTATTAGAGTATTTAGAGATTATTA
AAAAACATAATATCAACATTACAAGAATTGAATCAAGACCATCAAAAACCGAAAAAAAAG
ATTATGATTTCTTTTTAGATTTAGAATATCCAACAGAAAACAATAAAGAAGTTGAAAAGG
TTATTAAAGATCTCGAAGAAAAAGGTGTAAAAGCTACAACCCTTCAAGAAAGTTCAAACC
AAACTTATGCTCCATGGTTTCCAAGAAAAATTTCAGATTTAGATTTATTTGCAAATAAAG
TATTAGAAATGGGATCAGATTTAACTTCAGATCATCCAGGTGCTTCAGATCCAGTTTACA
GAGAAA----------
Length of 5' end seq. 546
3' end seq. ID SFI142Z
3' end seq. 
>SFI142Z.Seq
NNNNNNNNNNTTCGTCCAGTACAAGGTTTACTCTCTGCTAGAGATTTCTTAAATGGTTTA
GCTTTCCGTGTATTCCATGCAACTCAATATATTAGACATCCATCCGTACCATTATATACA
CCAGAACCAGATTGTTGTCATGAATTATTAGGTCATGTTCCATTATTAGCTGATCCTGAT
TTCGCTGATTTTAGTCAAGAGATTGGTTTAGCTTCAATTGGTGCTTCTGATGAAGATATT
CAATTACTTAGTACTTGTTATTGGTTTACAGTTGAATTTGGATTATGTAAAGAAGGTGAT
ACAATTAGAGCATATGGTGCAGGTATTTTATCATCAACAGGTGAAATGGAACACTTTTTA
ACTGATAAAGCAAAAAAATTACCATTTAATCCATTTGACGCATGCAATACTGAATATCCA
ATTACAACATTCCAACCACTTTACTATGTTGCAGAAAGTTTCCAAAAAGCAAAAGAACAA
ATGAGACAATTTGCTGATAGCTTTAAAAAACCATTTTCAATTCGTTACAATCCATACACT
CAATCAATTGAAATACTTGATAACAAAGATAAATTATTAAATATTTGCAATNATATTAGA
AATCAATC
Length of 3' end seq. 608
Connected seq. ID SFI142P
Connected seq. 
>SFI142P.Seq
ACTGTTGGCCTACTGGNATTTTTTTTTATTTTTATTTTCACAACTAATAACAGNACTAAA
TTAATAAAAATAAAAATAAAAATAAACAAACCAAATTAAAAATATTAAATAAAATGGAAT
CTAACACAAATTCTCAAGGACAAGGTATTATTCCTCAATCATATCATTCATCAATTTTCT
TTTCAATTTCAAAAGGATCTGATAAGATTGGTGGATTATTAGAGTATTTAGAGATTATTA
AAAAACATAATATCAACATTACAAGAATTGAATCAAGACCATCAAAAACCGAAAAAAAAG
ATTATGATTTCTTTTTAGATTTAGAATATCCAACAGAAAACAATAAAGAAGTTGAAAAGG
TTATTAAAGATCTCGAAGAAAAAGGTGTAAAAGCTACAACCCTTCAAGAAAGTTCAAACC
AAACTTATGCTCCATGGTTTCCAAGAAAAATTTCAGATTTAGATTTATTTGCAAATAAAG
TATTAGAAATGGGATCAGATTTAACTTCAGATCATCCAGGTGCTTCAGATCCAGTTTACA
GAGAAA----------TTCGTCCAGTACAAGGTTTACTCTCTGCTAGAGATTTCTTAAAT
GGTTTAGCTTTCCGTGTATTCCATGCAACTCAATATATTAGACATCCATCCGTACCATTA
TATACACCAGAACCAGATTGTTGTCATGAATTATTAGGTCATGTTCCATTATTAGCTGAT
CCTGATTTCGCTGATTTTAGTCAAGAGATTGGTTTAGCTTCAATTGGTGCTTCTGATGAA
GATATTCAATTACTTAGTACTTGTTATTGGTTTACAGTTGAATTTGGATTATGTAAAGAA
GGTGATACAATTAGAGCATATGGTGCAGGTATTTTATCATCAACAGGTGAAATGGAACAC
TTTTTAACTGATAAAGCAAAAAAATTACCATTTAATCCATTTGACGCATGCAATACTGAA
TATCCAATTACAACATTCCAACCACTTTACTATGTTGCAGAAAGTTTCCAAAAAGCAAAA
GAACAAATGAGACAATTTGCTGATAGCTTTAAAAAACCATTTTCAATTCGTTACAATCCA
TACACTCAATCAATTGAAATACTTGATAACAAAGATAAATTATTAAATATTTGCAATNAT
ATTAGAAATCAATC
Length of connected seq. 1144
Full length Seq ID -
Full length Seq. -
Length of full length seq. -