AFI417
Library AF
(Link to library)
Clone ID AFI417
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U10734-1
Original site URL
Representative seq. ID AFI417Z
(Link to Original site)
Representative DNA sequence
>AFI417 (AFI417Q) /CSM/AF/AFI4-A/AFI417Q.Seq.d/
XXXXXXXXXXGATGTAAAGAAAATCGCTACCTCACAAAAAGGTAATGCCGTTTTCTGTTG
GGTCGATATGAAGAAATTCCCACAACAAGCAACTCATATGGGTCTCTCTGGTAAAGTTGT
TCCAGCCATCTCTGTTGATTCAGTTGCCAATAAAGCTCGTTACAATTTCGATGAAAAAGA
AACCTTCTCATTCGATACCGTCTCCAAATGGATCCAAGATGTCATTGGTGGTAAAGTTTC
TCCATTTGTTAAATCTCAACCAGAACCAGAATCAAATGATGCTCCAGTTAAGGTTGCCGT
TGGTACCACTTTCAAAAAGTTGGTTTTAGACTCACCAAAGGATGTTTTGGTTGAATTCTA
CGCTCCATGGTGCGGTCATTGCAAGAATCTTGCTCCAATCTACGATAAATTAGGTGAATA
CTTAAAAGACGTTGAATCTGTCTCAATCGTAAAGATTGATGCCGACTCAAATGATGTACC
AAGTGATATCGAAATTAGAGGTTACCCAACCATCATGCTCTTCAAAGCTGATGACAAAGA
AAATCCAATCTCTTATGAAGGTCAAAGAAATGATCATATGAACTTTGTTGAATTCATTCA
AGATAACGCTGCCATTGAATTCAAATTACCATCATCTCAAACTGATGATAATGTNAATCT
AAAAAAGATTCTTCGCTAAACANANAATTAAAATAATTAATAAATANATA
sequence update 2001. 6. 2
Translated Amino Acid sequence
---VKKIATSQKGNAVFCWVDMKKFPQQATHMGLSGKVVPAISVDSVANKARYNFDEKET
FSFDTVSKWIQDVIGGKVSPFVKSQPEPESNDAPVKVAVGTTFKKLVLDSPKDVLVEFYA
PWCGHCKNLAPIYDKLGEYLKDVESVSIVKIDADSNDVPSDIEIRGYPTIMLFKADDKEN
PISYEGQRNDHMNFVEFIQDNAAIEFKLPSSQTDDNVNLKKILR*txn*nn**ix


Translated Amino Acid sequence (All Frames)
Frame A:
---m*rkslphkkvmpfsvgsi*rnshnkqliwvslvklfqpslliqlpiklvtismkkk
pshsipspngskmslvvkflhllnlnqnqnqmmlqlrlplvplskswf*thqrmfwlnst
lhgaviarillqstin*vnt*ktlnlsqs*rlmptqmmyqvisklevtqpscssklmtkk
iqslmkvkemii*tllnsfkitlplnsnyhhlklmimxi*krffakxxikiinkxi


Frame B:
---ckenryltkr*crfllgryeeipttsnsygslw*scsshlc*fscq*sslqfr*krn
lliryrlqmdprchww*sfsic*istrtrik*css*gcrwyhfqkvgfrltkgcfg*ilr
smvrslqescsnlr*ir*ilkrr*iclnrkd*crlk*ctk*yrn*rlpnhhalqs**qrk
snll*rskk*syelc*ihsr*rch*iqitiisn***cxskkdsslnxxlk*linx


Frame C:
---VKKIATSQKGNAVFCWVDMKKFPQQATHMGLSGKVVPAISVDSVANKARYNFDEKET
FSFDTVSKWIQDVIGGKVSPFVKSQPEPESNDAPVKVAVGTTFKKLVLDSPKDVLVEFYA
PWCGHCKNLAPIYDKLGEYLKDVESVSIVKIDADSNDVPSDIEIRGYPTIMLFKADDKEN
PISYEGQRNDHMNFVEFIQDNAAIEFKLPSSQTDDNVNLKKILR*txn*nn**ix


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

AFI417 (AFI417Q) /CSM/AF/AFI4-A/AFI417Q.Seq.d/ 1364 0.0
AFM669 (AFM669Q) /CSM/AF/AFM6-C/AFM669Q.Seq.d/ 1334 0.0
AFM486 (AFM486Q) /CSM/AF/AFM4-D/AFM486Q.Seq.d/ 1334 0.0
AFM464 (AFM464Q) /CSM/AF/AFM4-C/AFM464Q.Seq.d/ 1334 0.0
AFM204 (AFM204Q) /CSM/AF/AFM2-A/AFM204Q.Seq.d/ 1334 0.0
AFL563 (AFL563Q) /CSM/AF/AFL5-C/AFL563Q.Seq.d/ 1334 0.0
AFK831 (AFK831Q) /CSM/AF/AFK8-B/AFK831Q.Seq.d/ 1334 0.0
AFK804 (AFK804Q) /CSM/AF/AFK8-A/AFK804Q.Seq.d/ 1334 0.0
AFN128 (AFN128Q) /CSM/AF/AFN1-B/AFN128Q.Seq.d/ 1330 0.0
AFM861 (AFM861Q) /CSM/AF/AFM8-C/AFM861Q.Seq.d/ 1330 0.0

own update 2009. 4. 3
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

BJ171852|BJ171852.1 Physcomitrella patens subsp. patens cDNA clone:pph30f12, 3' end,single read. 599 e-167 1
CN206669|CN206669.1 Tor7097 Gametophyte rehydration Library Tortula ruralis cDNA, mRNA sequence. 78 2e-10 1
CN591465|CN591465.1 TTE00010235 Normalized large Tetrahymena thermophila cDNA, mRNA sequence. 74 3e-09 1
BM398179|BM398179.1 5009-0-41-G11.t.1 Chilcoat/Turkewitz cDNA (large fraction) Tetrahymena thermophila cDNA, mRNA sequence. 74 3e-09 1
CN597971|CN597971.1 TTE00009997 Normalized large Tetrahymena thermophila cDNA, mRNA sequence. 74 3e-09 1
CN590755|CN590755.1 TTE00006978 Normalized large Tetrahymena thermophila cDNA, mRNA sequence. 74 3e-09 1
CK029548|CK029548.1 AGENCOURT_16620510 NIH_ZGC_7 Danio rerio cDNA clone IMAGE:7051751 5', mRNA sequence. 70 5e-08 1
CB176061|CB176061.1 pl17e07.y3 Ancylostoma ceylanicum adult Ancylostoma ceylanicum cDNA 5' similar to TR:O17908 O17908 H06O01.1 PROTEIN. [1] ;, mRNA sequence. 70 5e-08 1
CN206834|CN206834.1 Tor7258 Gametophyte rehydration Library Tortula ruralis cDNA, mRNA sequence. 70 5e-08 1
CK030146|CK030146.1 AGENCOURT_16621384 NIH_ZGC_7 Danio rerio cDNA clone IMAGE:7052631 5', mRNA sequence. 70 5e-08 1
dna update 2004. 6.24
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

EU016183_1(EU016183|pid:none) Haemaphysalis longicornis strain G... 173 5e-42
(Q12730) RecName: Full=Protein disulfide-isomerase; Sho... 171 2e-41
DQ066336_1(DQ066336|pid:none) Ixodes scapularis isolate IS-6-12-... 168 2e-40
(Q00248) RecName: Full=Protein disulfide-isomerase; Sho... 167 4e-40
DQ377176_1(DQ377176|pid:none) Amblyomma variegatum protein disul... 163 5e-39
CU633901_146(CU633901|pid:none) Podospora anserina genomic DNA c... 160 3e-38
AE013599_1413(AE013599|pid:none) Drosophila melanogaster chromos... 154 2e-36
AB022013_1(AB022013|pid:none) Antheraea pernyi mRNA for protein ... 151 2e-35
AK290971_1(AK290971|pid:none) Homo sapiens cDNA FLJ78033 complet... 150 3e-35
BC046707_1(BC046707|pid:none) Xenopus laevis glucose regulated p... 150 3e-35
protein update 2009. 4.23
PSORT

psg: 0.86 gvh: 0.36 alm: 0.43 top: 0.47 tms: 0.00 mit: 0.31 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: cytoplasmic
28.0 %: nuclear
8.0 %: vacuolar
4.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: peroxisomal

>> prediction for AFI417 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID AFI417Z
3' end seq.
>AFI417Z.Seq
----------GATGTAAAGAAAATCGCTACCTCACAAAAAGGTAATGCCGTTTTCTGTTG
GGTCGATATGAAGAAATTCCCACAACAAGCAACTCATATGGGTCTCTCTGGTAAAGTTGT
TCCAGCCATCTCTGTTGATTCAGTTGCCAATAAAGCTCGTTACAATTTCGATGAAAAAGA
AACCTTCTCATTCGATACCGTCTCCAAATGGATCCAAGATGTCATTGGTGGTAAAGTTTC
TCCATTTGTTAAATCTCAACCAGAACCAGAATCAAATGATGCTCCAGTTAAGGTTGCCGT
TGGTACCACTTTCAAAAAGTTGGTTTTAGACTCACCAAAGGATGTTTTGGTTGAATTCTA
CGCTCCATGGTGCGGTCATTGCAAGAATCTTGCTCCAATCTACGATAAATTAGGTGAATA
CTTAAAAGACGTTGAATCTGTCTCAATCGTAAAGATTGATGCCGACTCAAATGATGTACC
AAGTGATATCGAAATTAGAGGTTACCCAACCATCATGCTCTTCAAAGCTGATGACAAAGA
AAATCCAATCTCTTATGAAGGTCAAAGAAATGATCATATGAACTTTGTTGAATTCATTCA
AGATAACGCTGCCATTGAATTCAAATTACCATCATCTCAAACTGATGATAATGTNAATCT
AAAAAAGATTCTTCGCTAAACANANAATTAAAATAATTAATAAATANATA
Length of 3' end seq. 700
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -