SFH806
Library SF
(Link to library)
Clone ID SFH806
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13716-1
Original site URL
Representative seq. ID SFH806P
(Link to Original site)
Representative DNA sequence
>SFH806 (SFH806Q) /CSM/SF/SFH8-A/SFH806Q.Seq.d/
ACTGTTGGCCTAATGACTTCGTTTTTATATAACACGCACAATAATATTATTATTTAAAAT
AATTGTAACTGTATTTTATTAAAAATATAATTATTTCAAATAGTATATATAAAAAACAAA
GATGGCAGATGATGCAATTAGNAATAGCAATTGTAAATGCAGATAGATGCAAACCANAAG
AAAGTAGTCAAGAATGTAAAAAGTATTGCCCAGTCGTAANGATGGGTAAACTTTGTATTG
XXXXXXXXXXATCANAATGTTGGCTGGTCATATGCCATCCGATNNTGATGCTCAAGTTCC
AGAGTTGAATGTCAGTTCAAACCACAAAAAATCGATCCAAAATTCCCAGGTTCCGTTAGA
GAATTGATTAATAAACGTATTTGCAACACTTTCCTTCATCCACAATTCCAATCCGATGTC
GTTAAACCATTAAACATTGAAAACATCATCGACAATCAAGTACTCAATTTATCTGGTGGT
GAGTTACAACGTGTTGCCATCGTTTTATGTTTAGGTCAACCTGCTGATATCTATCTCATT
GATGAACCATCCGCTTATTTGGATTCTGAACAACGTATTATCGTCTCTAAAGTCATCAAG
AGATTCATTCTTCACGCTGGTAAATCTGGTTTCATCGTAGAGCACGATTTCATTATGGCC
ACTTATTTAGCTGATCGTGTCATCGTTTATGATGGTATTCCAGGTGTCTCTTGTGTTGCT
AATACTCCACAATCTCTCCTCACTGGTATGAACTCTTTCCTTAAATCTCTCGAAATCACT
TTCCGTCGTGATCCATCCAATTTCCGTCCAAGAATTAACAAATTAAATTCAATCAAAGAT
AATGAACAAAAAGCTGCTGGTAATTATTTCTTGCCTTGATAATGTTGNAGNAATAAATAT
TAAATAATTA
sequence update 2001.11.22
Translated Amino Acid sequence
cwpndfvfi*haq*yyylk*l*LYFIKNIIISNSIYKKQRWQMMQLXIAIVNADRCKPXE
SSQECKKYCPVVXMGKLCI---

---IXMLAGHMPSDXDAQVPELNVSSNHKKSIQNSQVPLEN*linvfatlsfihnsnpms
lnh*tlktsstikysiylvvsynvlpsfyv*vnllisislmnhpliwilnnvlsslkssr
dsfftlvnlvss*stislwpli*livssfmmvfqvslvllilhnlsslv*tlslnlsksl
svvihpisvqeltn*iqskimnkkllviiscldnvxxinik*l


Translated Amino Acid sequence (All Frames)
Frame A:
tvglmtsflynthnniii*nncncillki*lfqivyiknkdgr*cn*x*ql*mqidanxk
kvvknvksiaqs*xwvnfvl---

---IXMLAGHMPSDXDAQVPELNVSSNHKKSIQNSQVPLEN*linvfatlsfihnsnpms
lnh*tlktsstikysiylvvsynvlpsfyv*vnllisislmnhpliwilnnvlsslkssr
dsfftlvnlvss*stislwpli*livssfmmvfqvslvllilhnlsslv*tlslnlsksl
svvihpisvqeltn*iqskimnkkllviiscldnvxxinik*l

Frame B:
lla**lrfyitrtiillfkiivtvfy*kynyfk*yi*ktkmaddaixnsnckcr*mqtxr
k*srm*kvlpsrxdg*tly---

---sxcwlvichpxxmlkfqs*msvqttknrskiprfr*rid**tylqhfpsstipircr
*tikh*khhrqsstqfiww*vttcchrfmfrstc*ylsh**tirlfgf*ttyyrl*shqe
ihssrw*iwfhrrarfhyghlfs*schrl*wysrcllcc*ystisphwyelfp*isrnhf
ps*siqfpskn*qikfnqr**tkscw*lflalimlxx*ilnn

Frame C:
cwpndfvfi*haq*yyylk*l*LYFIKNIIISNSIYKKQRWQMMQLXIAIVNADRCKPXE
SSQECKKYCPVVXMGKLCI---

---xnvgwsyairx*csssrvecqfkpqkidpkfpgsvrelinkricntflhpqfqsdvv
kplnieniidnqvlnlsggelqrvaivlclgqpadiylidepsayldseqriivskvikr
filhagksgfivehdfimatyladrvivydgipgvscvantpqslltgmnsflksleitf
rrdpsnfrprinklnsikdneqkaagnyflp**cxxnky*ii

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SFH806 (SFH806Q) /CSM/SF/SFH8-A/SFH806Q.Seq.d/ 1509 0.0
VHB384 (VHB384Q) /CSM/VH/VHB3-D/VHB384Q.Seq.d/ 1225 0.0
CHR752 (CHR752Q) /CSM/CH/CHR7-C/CHR752Q.Seq.d/ 1215 0.0
VHI606 (VHI606Q) /CSM/VH/VHI6-A/VHI606Q.Seq.d/ 1211 0.0
VHE148 (VHE148Q) /CSM/VH/VHE1-B/VHE148Q.Seq.d/ 1211 0.0
CHR192 (CHR192Q) /CSM/CH/CHR1-D/CHR192Q.Seq.d/ 1211 0.0
CHL669 (CHL669Q) /CSM/CH/CHL6-C/CHL669Q.Seq.d/ 1209 0.0
SFK682 (SFK682Q) /CSM/SF/SFK6-D/SFK682Q.Seq.d/ 1201 0.0
VHC726 (VHC726Q) /CSM/VH/VHC7-B/VHC726Q.Seq.d/ 1195 0.0
CHM444 (CHM444Q) /CSM/CH/CHM4-B/CHM444Q.Seq.d/ 1195 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AY077634|AY077634.1 Dictyostelium discoideum RNaseL inhibitor-like protein ABCE.1 gene, complete cds. 1100 0.0 4
AX488972|AX488972.1 Sequence 6272 from Patent WO02053728. 66 2e-26 5
AL400489|AL400489.1 T7 end of clone AS0AA022A06 of library AS0AA from strain CLIB 533 of Saccharomyces bayanus. 66 1e-23 4
AW331886|AW331886.1 S1H10 AGS-1 Pneumocystis carinii f. sp. carinii cDNA 3', mRNA sequence. 109 1e-20 2
CB550203|CB550203.1 MMPL0011_E09 MMPL Macaca mulatta cDNA, mRNA sequence. 56 1e-17 4
Z50111|Z50111.1 S.cerevisiae chromosome IV cosmid 6652. 46 2e-17 4
AX831598|AX831598.1 Sequence 2318 from Patent WO03072602. 46 2e-17 4
AX820568|AX820568.1 Sequence 2318 from Patent EP1338608. 46 2e-17 4
AX596270|AX596270.1 Sequence 1924 from Patent EP1258494. 46 2e-17 4
AR147511|AR147511.1 Sequence 21 from patent US 6221597. 46 2e-17 4
dna update 2003.12.15
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AY077634_1(AY077634|pid:none) Dictyostelium discoideum RNaseL in... 369 e-107
BT044624_1(BT044624|pid:none) Salmo salar clone ssal-rgf-001-081... 284 2e-76
AM467716_1(AM467716|pid:none) Vitis vinifera contig VV78X234292.... 285 6e-76
AY450958_1(AY450958|pid:none) Cercopithecus aethiops RNase L inh... 280 2e-75
AB168951_1(AB168951|pid:none) Macaca fascicularis testis cDNA, c... 280 2e-75
(P61221) RecName: Full=ATP-binding cassette sub-family E member ... 280 2e-75
AK167704_1(AK167704|pid:none) Mus musculus 14 days embryo liver ... 280 2e-75
CR860497_1(CR860497|pid:none) Pongo abelii mRNA; cDNA DKFZp469K1... 280 2e-75
BC066794_1(BC066794|pid:none) Mus musculus ATP-binding cassette,... 280 2e-75
BC016988_1(BC016988|pid:none) Homo sapiens, clone IMAGE:4396587,... 280 2e-75
protein update 2009. 5.25
PSORT

psg: 0.84 gvh: 0.51 alm: 0.34 top: 0.53 tms: 0.00 mit: 0.38 mip: 0.04
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: nuclear
28.0 %: mitochondrial
20.0 %: cytoplasmic
4.0 %: cytoskeletal

>> prediction for SFH806 is nuc

5' end seq. ID SFH806F
5' end seq.
>SFH806F.Seq
ACTGTTGGCCTAATGACTTCGTTTTTATATAACACGCACAATAATATTATTATTTAAAAT
AATTGTAACTGTATTTTATTAAAAATATAATTATTTCAAATAGTATATATAAAAAACAAA
GATGGCAGATGATGCAATTAGNAATAGCAATTGTAAATGCAGATAGATGCAAACCANAAG
AAAGTAGTCAAGAATGTAAAAAGTATTGCCCAGTCGTAANGATGGGTAAACTTTGTATTG
----------
Length of 5' end seq. 240
3' end seq. ID SFH806Z
3' end seq.
>SFH806Z.Seq
NNNNNNNNNNATCANAATGTTGGCTGGTCATATGCCATCCGATNNTGATGCTCAAGTTCC
AGAGTTGAATGTCAGTTCAAACCACAAAAAATCGATCCAAAATTCCCAGGTTCCGTTAGA
GAATTGATTAATAAACGTATTTGCAACACTTTCCTTCATCCACAATTCCAATCCGATGTC
GTTAAACCATTAAACATTGAAAACATCATCGACAATCAAGTACTCAATTTATCTGGTGGT
GAGTTACAACGTGTTGCCATCGTTTTATGTTTAGGTCAACCTGCTGATATCTATCTCATT
GATGAACCATCCGCTTATTTGGATTCTGAACAACGTATTATCGTCTCTAAAGTCATCAAG
AGATTCATTCTTCACGCTGGTAAATCTGGTTTCATCGTAGAGCACGATTTCATTATGGCC
ACTTATTTAGCTGATCGTGTCATCGTTTATGATGGTATTCCAGGTGTCTCTTGTGTTGCT
AATACTCCACAATCTCTCCTCACTGGTATGAACTCTTTCCTTAAATCTCTCGAAATCACT
TTCCGTCGTGATCCATCCAATTTCCGTCCAAGAATTAACAAATTAAATTCAATCAAAGAT
AATGAACAAAAAGCTGCTGGTAATTATTTCTTGCCTTGATAATGTTGNAGNAATAAATAT
TAAATAATTA
Length of 3' end seq. 670
Connected seq. ID SFH806P
Connected seq.
>SFH806P.Seq
ACTGTTGGCCTAATGACTTCGTTTTTATATAACACGCACAATAATATTATTATTTAAAAT
AATTGTAACTGTATTTTATTAAAAATATAATTATTTCAAATAGTATATATAAAAAACAAA
GATGGCAGATGATGCAATTAGNAATAGCAATTGTAAATGCAGATAGATGCAAACCANAAG
AAAGTAGTCAAGAATGTAAAAAGTATTGCCCAGTCGTAANGATGGGTAAACTTTGTATTG
----------ATCANAATGTTGGCTGGTCATATGCCATCCGATNNTGATGCTCAAGTTCC
AGAGTTGAATGTCAGTTCAAACCACAAAAAATCGATCCAAAATTCCCAGGTTCCGTTAGA
GAATTGATTAATAAACGTATTTGCAACACTTTCCTTCATCCACAATTCCAATCCGATGTC
GTTAAACCATTAAACATTGAAAACATCATCGACAATCAAGTACTCAATTTATCTGGTGGT
GAGTTACAACGTGTTGCCATCGTTTTATGTTTAGGTCAACCTGCTGATATCTATCTCATT
GATGAACCATCCGCTTATTTGGATTCTGAACAACGTATTATCGTCTCTAAAGTCATCAAG
AGATTCATTCTTCACGCTGGTAAATCTGGTTTCATCGTAGAGCACGATTTCATTATGGCC
ACTTATTTAGCTGATCGTGTCATCGTTTATGATGGTATTCCAGGTGTCTCTTGTGTTGCT
AATACTCCACAATCTCTCCTCACTGGTATGAACTCTTTCCTTAAATCTCTCGAAATCACT
TTCCGTCGTGATCCATCCAATTTCCGTCCAAGAATTAACAAATTAAATTCAATCAAAGAT
AATGAACAAAAAGCTGCTGGTAATTATTTCTTGCCTTGATAATGTTGNAGNAATAAATAT
TAAATAATTA
Length of connected seq. 900
Full length Seq ID -
Full length Seq. -
Length of full length seq. -