>SFH756 (SFH756Q) /CSM/SF/SFH7-C/SFH756Q.Seq.d/
XXXXXXXXXXANNNNNNNNNNNNNNGNNNNNNNNNTNAAANNTTNNNNNNNNTGNNTNNN
NGCNNNAAANNTNNNNNCNNNNNNTAGTNNNNNATAGTNAATTGGCATNTNNNNCAAGTG
TTAGTGGGTTCGCTTTNNCAAGTGATTATATGTACTTNTNGTATAGTGGTGGAATTAAGG
GTTATCCAAAGAATGGTGATGCCAGTAGAGTTAGGAAATTAGTTAGTGAGAATGTTGTTG
CAATGATTTCAAATGGTGATTTCTTATATTACCAAACTGATTCTGGTGTAGTTAAAAGTG
TTTCAACCAGTGGTAACCATCCTCAAGTTAATATTCTATATACTCCAGTCAGTGATAACC
AATGTCAATGCTCCGTTGGTTTTAGTGGTGATGATTGTAGACAATGTGATAATGGTATGG
TATTGTGGGCTAGTGACAATGGAATACCAATGTGTTCACCATTAAATTCATTGGGTAAAC
CAAAAACCTGTTATGCTGCTTAT

---XXXXXXXXXXXXXXXXXXXXXXXXXVXXSXLAXXXSVSGFAXXSDYMYXXYSGGIKG
YPKNGDASRVRKLVSENVVAMISNGDFLYYQTDSGVVKSVSTSGNHPQVNILYTPVSDNQ
CQCSVGFSGDDCRQCDNGMVLWASDNGIPMCSPLNSLGKPKTCYAAY

Frame A:
---XXXXXXXXXXXXXXXXXXXXXXXXXVXXSXLAXXXSVSGFAXXSDYMYXXYSGGIKG
YPKNGDASRVRKLVSENVVAMISNGDFLYYQTDSGVVKSVSTSGNHPQVNILYTPVSDNQ
CQCSVGFSGDDCRQCDNGMVLWASDNGIPMCSPLNSLGKPKTCYAAY


Frame B:
---xxxxxxxxxxxxxxxxxxkxxxxx*xxivnwhxxqvlvgslxqviictxxivvelrv
iqrmvmpvelgn*lvrmllq*fqmvisyitklilv*lkvfqpvvtilklifyilqsvitn
vnaplvlvvmivdnvimvwycglvtmeyqcvhh*ihwvnqkpvmll


Frame C:
---xxxxxxxxkxxxxxxxaxxxxxxxsxx*xigxxxkc*wvrfxk*lyvlxv*wwn*gl
skew*cq*s*eis**ecccndfkw*flilpn*fwcs*kcfnqw*psss*ysiyssq**pm
smlrwf*w**l*tm**wygivg**qwntnvftikfig*tknllccl

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSD538 (SSD538Q) /CSM/SS/SSD5-B/SSD538Q.Seq.d/                        753   0.0
SHF390 (SHF390Q) /CSM/SH/SHF3-D/SHF390Q.Seq.d/                        753   0.0
SFK747 (SFK747Q) /CSM/SF/SFK7-B/SFK747Q.Seq.d/                        753   0.0
SFH756 (SFH756Q) /CSM/SF/SFH7-C/SFH756Q.Seq.d/                        753   0.0
SFF531 (SFF531Q) /CSM/SF/SFF5-B/SFF531Q.Seq.d/                        753   0.0
SSJ826 (SSJ826Q) /CSM/SS/SSJ8-B/SSJ826Q.Seq.d/                        745   0.0
SFJ581 (SFJ581Q) /CSM/SF/SFJ5-D/SFJ581Q.Seq.d/                        733   0.0
VFI757 (VFI757Q) /CSM/VF/VFI7-C/VFI757Q.Seq.d/                         34   1.9
SSG741 (SSG741Q) /CSM/SS/SSG7-B/SSG741Q.Seq.d/                         34   1.9
SSC874 (SSC874Q) /CSM/SS/SSC8-D/SSC874Q.Seq.d/                         34   1.9

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC111772|AC111772.4 Rattus norvegicus clone CH230-169C7, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces.    44  1.6  1
AC118026|AC118026.6 Mus musculus clone RP23-463I7, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces.    44  1.6  1
AL669984|AL669984.1 Human DNA sequence from clone RP11-775I22 on chromosome 6.    42  6.2  1
BQ492397|BQ492397.1 EST01563 Pb0001 Paracoccidioides brasiliensis cDNA, mRNA sequence.    42  6.2  1
AX346428|AX346428.1 Sequence 1499 from Patent WO0200928.          42  6.2  1
AC133956|AC133956.2 Mus musculus chromosome UNK clone RP23-347E10, WORKING DRAFT SEQUENCE, 9 unordered pieces.    42  6.2  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY392438_1(AY392438|pid:none) Dictyostelium discoideum tenascin ...   267   9e-71
AC116955_5(AC116955|pid:none) Dictyostelium discoideum chromosom...    50   3e-05
AB210518_1(AB210518|pid:none) Ciona intestinalis mRNA for jagged...    38   0.15
BX465868_1(BX465868|pid:none) Zebrafish DNA sequence from clone ...    36   0.57
BC168665_1(BC168665|pid:none) Rattus norvegicus cDNA clone MGC:1...    35   0.74
BX323857_1(BX323857|pid:none) Mouse DNA sequence from clone RP23...    35   0.97
(Q05793) RecName: Full=Basement membrane-specific heparan sulfat...    35   0.97
DQ917570_1(DQ917570|pid:none) Parhyale hawaiensis delta protein ...    35   1.3
T16271(T16271)hypothetical protein F35D2.3 - Caenorhabditis eleg...    34   2.2
AX045119_1(AX045119|pid:none) Sequence 27 from Patent WO0066730.       33   2.8

 psg: 0.86  gvh: 0.59  alm: 0.47  top: 0.47  tms: 0.00  mit: 0.26  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 32.0 %: nuclear
	 12.0 %: cytoskeletal
	  8.0 %: extracellular, including cell wall
	  8.0 %: mitochondrial
	  4.0 %: vacuolar

>> prediction for SFH756 is cyt

>SFH756Z.Seq
NNNNNNNNNNANNNNNNNNNNNNNNGNNNNNNNNNTNAAANNTTNNNNNNNNTGNNTNNN
NGCNNNAAANNTNNNNNCNNNNNNTAGTNNNNNATAGTNAATTGGCATNTNNNNCAAGTG
TTAGTGGGTTCGCTTTNNCAAGTGATTATATGTACTTNTNGTATAGTGGTGGAATTAAGG
GTTATCCAAAGAATGGTGATGCCAGTAGAGTTAGGAAATTAGTTAGTGAGAATGTTGTTG
CAATGATTTCAAATGGTGATTTCTTATATTACCAAACTGATTCTGGTGTAGTTAAAAGTG
TTTCAACCAGTGGTAACCATCCTCAAGTTAATATTCTATATACTCCAGTCAGTGATAACC
AATGTCAATGCTCCGTTGGTTTTAGTGGTGATGATTGTAGACAATGTGATAATGGTATGG
TATTGTGGGCTAGTGACAATGGAATACCAATGTGTTCACCATTAAATTCATTGGGTAAAC
CAAAAACCTGTTATGCTGCTTAT