SFH730
Library SF
(Link to library)
Clone ID SFH730
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16267-1
Original site URL
Representative seq. ID SFH730F
(Link to Original site)
Representative DNA sequence
>SFH730 (SFH730Q) /CSM/SF/SFH7-B/SFH730Q.Seq.d/
ACTGTTGGCCTACTGGNATAATTTTTCCAAACAAATAAAAAAAATAATATAATATAATAT
AATTAAATATATAAAATGAGCAATGAAGTCATTAATGTATTAATTACTGGTGCAGCAGGT
CAAATTGCATATTCATTAATTTTCAATGTATGTAAAGGTGATATGTTTGGTTTAGATCAA
CGTATTAAATTACATCTTTTAGATATTCCACAAATGGTAGACTCATTGAAAGGTATTGTA
ATGGAGATTCAAGGATGGTGCATATCCATTGATCGCTGATACAGTTATAACTGCCGATGT
TAAAGAAGCATTCACTGGTGTACATTATGCAATTTTAGTTGGTGCTATGCCACGTANAGA
AGGTATGGAAAGAGCTGATCTTTTGAAAGCAAACGCAGCAATCTTCAAAGTTCAAGGTAA
AGCACTCGCCGAACATGCAAATAXXXXXXXXXX
sequence update 2001. 6. 1
Translated Amino Acid sequence
tvgllx*ffqtnkknnii*yn*IYKMSNEVINVLITGAAGQIAYSLIFNVCKGDMFGLDQ
RIKLHLLDIPQMVDSLKGIVMEIQGWCISIDR*ysyncrc*rsihwctlcnfswcyatxr
rygks*sfeskrsnlqssr*strrtck---


Translated Amino Acid sequence (All Frames)
Frame A:
tvgllx*ffqtnkknnii*yn*IYKMSNEVINVLITGAAGQIAYSLIFNVCKGDMFGLDQ
RIKLHLLDIPQMVDSLKGIVMEIQGWCISIDR*ysyncrc*rsihwctlcnfswcyatxr
rygks*sfeskrsnlqssr*strrtck---


Frame B:
llaywxnfskqikkii*yniikyik*amkslmy*llvqqvklhih*fsmyvkviclv*in
vlnyif*ifhkw*th*kvl*wrfkdgaypliadtvitadvkeaftgvhyailvgamprxe
gmeradllkanaaifkvqgkalaehan---


Frame C:
cwptgiifpnk*kk*ynii*lni*neq*sh*cinywcsrsncifinfqcm*r*yvwfrst
y*itsfrystngrlierycngdsrmvhih*sliql*lpmlkkhslvyimqf*lvlchvxk
vwkelif*kqtqqsskfkvkhspnmq---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SFH730 (SFH730Q) /CSM/SF/SFH7-B/SFH730Q.Seq.d/ 722 0.0
VFN856 (VFN856Q) /CSM/VF/VFN8-C/VFN856Q.Seq.d/ 698 0.0
VFL218 (VFL218Q) /CSM/VF/VFL2-A/VFL218Q.Seq.d/ 698 0.0
VFK307 (VFK307Q) /CSM/VF/VFK3-A/VFK307Q.Seq.d/ 698 0.0
VFK265 (VFK265Q) /CSM/VF/VFK2-C/VFK265Q.Seq.d/ 698 0.0
VFE489 (VFE489Q) /CSM/VF/VFE4-D/VFE489Q.Seq.d/ 698 0.0
VFD713 (VFD713Q) /CSM/VF/VFD7-A/VFD713Q.Seq.d/ 698 0.0
VFC868 (VFC868Q) /CSM/VF/VFC8-C/VFC868Q.Seq.d/ 698 0.0
SFK157 (SFK157Q) /CSM/SF/SFK1-C/SFK157Q.Seq.d/ 698 0.0
SFJ624 (SFJ624Q) /CSM/SF/SFJ6-A/SFJ624Q.Seq.d/ 698 0.0

own update 2001.11.26
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

CB073641|CB073641.1 taa19b04.y1 Hydra EST -II Hydra magnipapillata cDNA 5' similar tosequence. 44 0.002 2
CF654456|CF654456.1 tac81f01.y1 Hydra EST -IV Hydra magnipapillata cDNA 5' similar to SW:MDHC_MOUSE P14152 MALATE DEHYDROGENASE, CYTOPLASMIC ;, mRNA sequence. 44 0.002 2
CF777357|CF777357.1 tad09f04.y1 Hydra EST -IV Hydra magnipapillata cDNA 5' similar to SW:MDHC_MOUSE P14152 MALATE DEHYDROGENASE, CYTOPLASMIC ;, mRNA sequence. 44 0.002 2
CF601602|CF601602.1 tac31e11.y1 Hydra EST -IV Hydra magnipapillata cDNA 5' similar to SW:MDHC_MOUSE P14152 MALATE DEHYDROGENASE, CYTOPLASMIC ;, mRNA sequence. 44 0.002 2
CF656636|CF656636.1 tac62d07.y1 Hydra EST -IV Hydra magnipapillata cDNA 5' similar to SW:MDHC_MOUSE P14152 MALATE DEHYDROGENASE, CYTOPLASMIC ;, mRNA sequence. 44 0.002 2
CF656238|CF656238.1 tac51h05.y1 Hydra EST -IV Hydra magnipapillata cDNA 5' similar to SW:MDHC_MOUSE P14152 MALATE DEHYDROGENASE, CYTOPLASMIC ;, mRNA sequence. 44 0.002 2
CF657720|CF657720.1 tac70h02.y1 Hydra EST -IV Hydra magnipapillata cDNA 5' similar to SW:MDHC_MOUSE P14152 MALATE DEHYDROGENASE, CYTOPLASMIC ;, mRNA sequence. 44 0.002 2
CF777319|CF777319.1 tad09a09.y1 Hydra EST -IV Hydra magnipapillata cDNA 5' similar to SW:MDHC_MOUSE P14152 MALATE DEHYDROGENASE, CYTOPLASMIC ;, mRNA sequence. 44 0.002 2
CF777495|CF777495.1 tad11e12.y1 Hydra EST -IV Hydra magnipapillata cDNA 5' similar to SW:MDHC_MOUSE P14152 MALATE DEHYDROGENASE, CYTOPLASMIC ;, mRNA sequence. 44 0.002 2
CF657580|CF657580.1 tac69b04.y1 Hydra EST -IV Hydra magnipapillata cDNA 5' similar to SW:MDHC_MOUSE P14152 MALATE DEHYDROGENASE, CYTOPLASMIC ;, mRNA sequence. 44 0.002 2
dna update 2003.12.31
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54GE6) RecName: Full=Probable malate dehydrogenase 1; ... 77 5e-28
AP009384_4186(AP009384|pid:none) Azorhizobium caulinodans ORS 57... 73 9e-27
(Q2YAQ4) RecName: Full=Malate dehydrogenase; EC=1.1.1.3... 71 9e-27
(Q5NYA9) RecName: Full=Malate dehydrogenase; EC=1.1.1.3... 75 1e-26
AF390559_1(AF390559|pid:none) Sphyraena idiastes cytosolic malat... 74 2e-26
BT043497_1(BT043497|pid:none) Salmo salar clone HM4_0203 malate ... 75 2e-26
EU569765_1(EU569765|pid:none) Ctenopharyngodon idella cytosolic ... 71 2e-26
CP000781_1659(CP000781|pid:none) Xanthobacter autotrophicus Py2,... 74 2e-26
(Q7NZ60) RecName: Full=Malate dehydrogenase; EC=1.1.1.3... 73 2e-26
EU863454_1(EU863454|pid:none) Lottia austrodigitalis cytosolic m... 72 3e-26
protein update 2009. 5.25
PSORT

psg: 0.91 gvh: 0.44 alm: 0.38 top: 0.40 tms: 0.00 mit: 0.22 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: cytoplasmic
40.0 %: nuclear
8.0 %: vesicles of secretory system
8.0 %: endoplasmic reticulum

>> prediction for SFH730 is cyt

5' end seq. ID SFH730F
5' end seq.
>SFH730F.Seq
ACTGTTGGCCTACTGGNATAATTTTTCCAAACAAATAAAAAAAATAATATAATATAATAT
AATTAAATATATAAAATGAGCAATGAAGTCATTAATGTATTAATTACTGGTGCAGCAGGT
CAAATTGCATATTCATTAATTTTCAATGTATGTAAAGGTGATATGTTTGGTTTAGATCAA
CGTATTAAATTACATCTTTTAGATATTCCACAAATGGTAGACTCATTGAAAGGTATTGTA
ATGGAGATTCAAGGATGGTGCATATCCATTGATCGCTGATACAGTTATAACTGCCGATGT
TAAAGAAGCATTCACTGGTGTACATTATGCAATTTTAGTTGGTGCTATGCCACGTANAGA
AGGTATGGAAAGAGCTGATCTTTTGAAAGCAAACGCAGCAATCTTCAAAGTTCAAGGTAA
AGCACTCGCCGAACATGCAAATA----------
Length of 5' end seq. 443
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -