NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFH683
Library SF
(Link to library)
Clone ID SFH683
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16415-1
Original site URL
Representative seq. ID SFH683P
(Link to Original site)
Representative DNA sequence 
>SFH683 (SFH683Q) /CSM/SF/SFH6-D/SFH683Q.Seq.d/
CTGTTGGCCTACTGGTAGAAGATGAAACCATCTCTGCAGNANNGCCTCGAATCAATGTCT
GTCACTCAAGNATCACTTTAGAACTGCTCTCACCCTCTCCAATCCATCTGCTCTTCGTGA
AACCGTCGTCGAAGTTCCAACAACCACTTGGGAAGATATTGGTGGTTTGGAAGGTGTCAA
GAGAGAATTACGTGAAACCGTTCAATATCCAGTCGAACATCCAGAGAAATTCAGAAAATT
CGGTATGCAACCATCCAAAGGTGTACTCTTTTATGGTCCACCAGGTTGTGGTAAGACTTT
ATTAGCCAAGGCCATCGCCAACGAATGTCAAGCCAATTTCATCTCTATCAAAGGTCCAGA
ACTCTTAACCATGTGGTTTGGTGAGTCTGAAGCCAACGTTCGTGAACTCTTTGATAAAGC
TCGTCAAGCCGCTCCATGTGTTTTGTTCTTTGATGAGTTGGATAGTATTGCACGTTCTAG
AGGTTCACCACAAGGTGATGCTGGTGGTGCTGGTGATAGGAGTTATCAATCAAATTTTAA
CTGAAATGGATGGTATGAAXXXXXXXXXXAGNNCAGATNTNATNGATCCAGNTATCCTCC
GTNCAGGTNGTTTAGATCNANTCATTTACATTCCATTNCCAGATTTNCCATNTNGTGTTG
CCATTTTCAAGGNTTGTTTCAATNAATCACCAGTNGCCAAGGATGTAGATTTAGAATTTT
TGGGTCAAAAGACTCAAGGTTTTTTTGGTGCAGATTTAACTGAAATTTGTCAACGTGCCT
GTAAATTAGCTATTNGTGAATCCNTTGAAAAGGATATTGAATCCNCCAAAGNCCGTCAAN
AATCTGGTGATNCCAAGATGGAAGATGNCTCTGTCGATCCAGNACCAGAAATTACTCGTG
NTCNCTTCCAAGAAGCCATGAGATCTGCTCGTCGTTCTGNATCCGATAATGNTATTAGAA
AATATGAAAGCTTTGCNCAAACTTTAGNTCNATCNAGAGGTCTTGGTAATAATTTCAAA
sequence update 2001.11.22
Translated Amino Acid sequence 
vgllvedetisaxxprinvchsxitlellspspihllfvkpsskfqqplgkilvvwkvsr
enyvkpfniqsniqrnsensvcnhpkvysfmvhqvvvrly*prpsptnvkpisslskvqn
s*PCGLVSLKPTFVNSLIKLVKPLHVFCSLMSWIVLHVLEVHHKVMLVVLVIGVINQILT
EMDGM---

---XXDXXDPXILRXGXLDXXIYIPXPDXPXXVAIFKXCFNXSPVAKDVDLEFLGQKTQG
FFGADLTEICQRACKLAIXESXEKDIESXKXRQXSGDXKMEDXSVDPXPEITRXXFQEAM
RSARRSXSDNXIRKYESFAQTLXXSRGLGNNFK
Translated Amino Acid sequence (All Frames) 
Frame A:
llayw*kmkpslqxxlesmsvtqxsl*ncshplqsicss*nrrrssnnhlgrywwfgrcq
erit*nrsissrtsreiqkiryatiqrctllwstrlw*dfisqghrqrmssqfhlyqrsr
tlnhvvw*v*sqrs*tl**ssssrsmcfvl**vg*yctf*rfttr*cwwcw**elsikf*
lkwmv*---

---XXDXXDPXILRXGXLDXXIYIPXPDXPXXVAIFKXCFNXSPVAKDVDLEFLGQKTQG
FFGADLTEICQRACKLAIXESXEKDIESXKXRQXSGDXKMEDXSVDPXPEITRXXFQEAM
RSARRSXSDNXIRKYESFAQTLXXSRGLGNNFK

Frame B:
cwptgrr*nhlcxxasnqclslkxhfrtaltlsnpsalretvvevptttwedigglegvk
relretvqypvehpekfrkfgmqpskgvlfygppgcgktllakaianecqanfisikgpe
lltmwfgeseanvrelfdkarqaapcvlffdeldsiarsrgspqgdaggagdrsyqsnfn
*ngwye---

---xqxxxiqxssvqvv*ixsftfhxqixhxvlpfsrxvsxnhqxprm*i*nfwvkrlkv
flvqi*lkfvnvpvn*lxvnplkrilnppkxvxnlvxprwkmxlsiqxqkllvxxskkp*
dllvvlxpimxlenmkalxkl*xxxevlviis

Frame C:
vgllvedetisaxxprinvchsxitlellspspihllfvkpsskfqqplgkilvvwkvsr
enyvkpfniqsniqrnsensvcnhpkvysfmvhqvvvrly*prpsptnvkpisslskvqn
s*PCGLVSLKPTFVNSLIKLVKPLHVFCSLMSWIVLHVLEVHHKVMLVVLVIGVINQILT
EMDGM---

---xrxxxsxyppxrxfrsxhlhsixrfxxxcchfqglfqxitsxqgcrfrifgskdsrf
fwcrfn*nlstcl*isyx*ix*kgy*ixqxpsxiw*xqdgrxlcrsxtrnysxslprshe
icssfxir*xy*ki*klcxnfxsixrsw**fq
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFH683 (SFH683Q) /CSM/SF/SFH6-D/SFH683Q.Seq.d/                       1699   0.0
AFI895 (AFI895Q) /CSM/AF/AFI8-D/AFI895Q.Seq.d/                        842   0.0
AHL112 (AHL112Q) /CSM/AH/AHL1-A/AHL112Q.Seq.d/                        646   0.0
VSI623 (VSI623Q) /CSM/VS/VSI6-A/VSI623Q.Seq.d/                        642   0.0
VHP286 (VHP286Q) /CSM/VH/VHP2-D/VHP286Q.Seq.d/                        642   0.0
VHJ302 (VHJ302Q) /CSM/VH/VHJ3-A/VHJ302Q.Seq.d/                        642   0.0
VHH104 (VHH104Q) /CSM/VH/VHH1-A/VHH104Q.Seq.d/                        642   0.0
CHI521 (CHI521Q) /CSM/CH/CHI5-A/CHI521Q.Seq.d/                        642   0.0
AHP625 (AHP625Q) /CSM/AH/AHP6-B/AHP625Q.Seq.d/                        642   0.0
AHL742 (AHL742Q) /CSM/AH/AHL7-B/AHL742Q.Seq.d/                        642   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U83085|U83085.2 Dictyostelium discoideum cell division cycle protein 48 (cdcD) mRNA, complete cds.   880   0.0    6
BG893512|BG893512.1 kt10d05.y2 Strongyloides ratti L1 pAMP1 v3 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to SW:TER2_CAEEL P54812 TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE HOMOLOG 2 ;, mRNA sequence.   121   9e-34  3
BC046949|BC046949.1 Xenopus laevis valosin containing protein, mRNA (cDNA clone MGC:52611 IMAGE:5571505), complete cds.   127   6e-33  4
BU907931|BU907931.1 AGENCOURT_10481572 NICHD XGC Emb1 Xenopus laevis cDNA clone IMAGE:6633241 5', mRNA sequence.   127   9e-33  3
BQ483511|BQ483511.1 WHE3509_E03_I05ZS Wheat unstressed root cDNA library Triticum aestivum cDNA clone WHE3509_E03_I05, mRNA sequence.   123   1e-31  3
CF014811|CF014811.1 QBL19c06.xg QBL Zea mays cDNA clone QBL19c06, mRNA sequence.    68   6e-31  5
BQ295571|BQ295571.1 1091037F11.y2 1091 - Immature ear with common ESTs screened by Schmidt lab Zea mays cDNA, mRNA sequence.    68   6e-31  5
BU037145|BU037145.1 946132E11.y1 946 - tassel primordium prepared by Schmidt lab Zea mays cDNA, mRNA sequence.    76   1e-30  7
BQ528108|BQ528108.1 1091055A06.y1 1091 - Immature ear with common ESTs screened by Schmidt lab Zea mays cDNA, mRNA sequence.    76   1e-30  7
BU571725|BU571725.1 946184D10.y1 946 - tassel primordium prepared by Schmidt lab Zea mays cDNA, mRNA sequence.    76   2e-30  7
dna update 2003.12.14
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U83085_1(U83085|pid:none) Dictyostelium discoideum cell division...   274   e-137
AK098874_1(AK098874|pid:none) Oryza sativa Japonica Group cDNA c...   249   e-108
(P54812) RecName: Full=Transitional endoplasmic reticulum ATPase...   235   e-108
FB906005_1(FB906005|pid:none) Sequence 125278 from Patent WO2008...   249   e-108
FB781494_1(FB781494|pid:none) Sequence 767 from Patent WO2008034...   249   e-108
FB906007_1(FB906007|pid:none) Sequence 125280 from Patent WO2008...   248   e-108
FB781858_1(FB781858|pid:none) Sequence 1131 from Patent WO200803...   249   e-108
AK167794_1(AK167794|pid:none) Mus musculus TIB-55 BB88 cDNA, RIK...   239   e-108
S25197(S25197;S30329) transitional endoplasmic reticulum ATPase ...   239   e-108
AK169140_1(AK169140|pid:none) Mus musculus 17 days embryo kidney...   239   e-108
protein update 2009. 5.25
PSORT 

 psg: 0.85  gvh: 0.59  alm: 0.27  top: 0.17  tms: 0.07  mit: 0.30  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: endoplasmic reticulum
	 20.0 %: cytoplasmic
	 20.0 %: mitochondrial
	 16.0 %: nuclear
	 12.0 %: Golgi
	  4.0 %: plasma membrane
	  4.0 %: extracellular, including cell wall

>> prediction for SFH683 is end
5' end seq. ID SFH683F
5' end seq. 
>SFH683F.Seq
CTGTTGGCCTACTGGTAGAAGATGAAACCATCTCTGCAGNANNGCCTCGAATCAATGTCT
GTCACTCAAGNATCACTTTAGAACTGCTCTCACCCTCTCCAATCCATCTGCTCTTCGTGA
AACCGTCGTCGAAGTTCCAACAACCACTTGGGAAGATATTGGTGGTTTGGAAGGTGTCAA
GAGAGAATTACGTGAAACCGTTCAATATCCAGTCGAACATCCAGAGAAATTCAGAAAATT
CGGTATGCAACCATCCAAAGGTGTACTCTTTTATGGTCCACCAGGTTGTGGTAAGACTTT
ATTAGCCAAGGCCATCGCCAACGAATGTCAAGCCAATTTCATCTCTATCAAAGGTCCAGA
ACTCTTAACCATGTGGTTTGGTGAGTCTGAAGCCAACGTTCGTGAACTCTTTGATAAAGC
TCGTCAAGCCGCTCCATGTGTTTTGTTCTTTGATGAGTTGGATAGTATTGCACGTTCTAG
AGGTTCACCACAAGGTGATGCTGGTGGTGCTGGTGATAGGAGTTATCAATCAAATTTTAA
CTGAAATGGATGGTATGAA----------
Length of 5' end seq. 559
3' end seq. ID SFH683Z
3' end seq. 
>SFH683Z.Seq
NNNNNNNNNNAGNNCAGATNTNATNGATCCAGNTATCCTCCGTNCAGGTNGTTTAGATCN
ANTCATTTACATTCCATTNCCAGATTTNCCATNTNGTGTTGCCATTTTCAAGGNTTGTTT
CAATNAATCACCAGTNGCCAAGGATGTAGATTTAGAATTTTTGGGTCAAAAGACTCAAGG
TTTTTTTGGTGCAGATTTAACTGAAATTTGTCAACGTGCCTGTAAATTAGCTATTNGTGA
ATCCNTTGAAAAGGATATTGAATCCNCCAAAGNCCGTCAANAATCTGGTGATNCCAAGAT
GGAAGATGNCTCTGTCGATCCAGNACCAGAAATTACTCGTGNTCNCTTCCAAGAAGCCAT
GAGATCTGCTCGTCGTTCTGNATCCGATAATGNTATTAGAAAATATGAAAGCTTTGCNCA
AACTTTAGNTCNATCNAGAGGTCTTGGTAATAATTTCAAA
Length of 3' end seq. 460
Connected seq. ID SFH683P
Connected seq. 
>SFH683P.Seq
CTGTTGGCCTACTGGTAGAAGATGAAACCATCTCTGCAGNANNGCCTCGAATCAATGTCT
GTCACTCAAGNATCACTTTAGAACTGCTCTCACCCTCTCCAATCCATCTGCTCTTCGTGA
AACCGTCGTCGAAGTTCCAACAACCACTTGGGAAGATATTGGTGGTTTGGAAGGTGTCAA
GAGAGAATTACGTGAAACCGTTCAATATCCAGTCGAACATCCAGAGAAATTCAGAAAATT
CGGTATGCAACCATCCAAAGGTGTACTCTTTTATGGTCCACCAGGTTGTGGTAAGACTTT
ATTAGCCAAGGCCATCGCCAACGAATGTCAAGCCAATTTCATCTCTATCAAAGGTCCAGA
ACTCTTAACCATGTGGTTTGGTGAGTCTGAAGCCAACGTTCGTGAACTCTTTGATAAAGC
TCGTCAAGCCGCTCCATGTGTTTTGTTCTTTGATGAGTTGGATAGTATTGCACGTTCTAG
AGGTTCACCACAAGGTGATGCTGGTGGTGCTGGTGATAGGAGTTATCAATCAAATTTTAA
CTGAAATGGATGGTATGAA----------AGNNCAGATNTNATNGATCCAGNTATCCTCC
GTNCAGGTNGTTTAGATCNANTCATTTACATTCCATTNCCAGATTTNCCATNTNGTGTTG
CCATTTTCAAGGNTTGTTTCAATNAATCACCAGTNGCCAAGGATGTAGATTTAGAATTTT
TGGGTCAAAAGACTCAAGGTTTTTTTGGTGCAGATTTAACTGAAATTTGTCAACGTGCCT
GTAAATTAGCTATTNGTGAATCCNTTGAAAAGGATATTGAATCCNCCAAAGNCCGTCAAN
AATCTGGTGATNCCAAGATGGAAGATGNCTCTGTCGATCCAGNACCAGAAATTACTCGTG
NTCNCTTCCAAGAAGCCATGAGATCTGCTCGTCGTTCTGNATCCGATAATGNTATTAGAA
AATATGAAAGCTTTGCNCAAACTTTAGNTCNATCNAGAGGTCTTGGTAATAATTTCAAA
Length of connected seq. 1009
Full length Seq ID -
Full length Seq. -
Length of full length seq. -