>SFH653 (SFH653Q) /CSM/SF/SFH6-C/SFH653Q.Seq.d/
XXXXXXXXXXTNTNNTNTNNNNNNGNNNNTANAGNNNNNTTNNNTNNNNGGNTANNNAGN
NNTNNNTGNNNNNATNNNNTNTATNNTTTTNCNTTTAATNTNTTTAATTTTATNNNAATA
TGTTNAAGGTGTATCTTTAAATAATCAATTCANTGATCAATTAAAAACTNTCAGTTTCCA
TATTCATGATGCTGTCATTGAAAAACAAGTTAATAATGTTGCTGAATTAATCAACACTGT
TTTAAGTATTGCAAAGGACGTATTTGGTTGCAAGAGTGTTTATCTCTCTGCTCAATTTGC
CATCGTTTTTTATTTAATCGGTTGTTTAAGCAAATGTTATCAAATACTGCCATCCTCTAC
TTTGGTTTCCTCGTTTCCTTTGTTGTTCCAAGACTCTACGTTGAAAAGAAAGAAGTTATT
GACCAACAATTCTCTAAAGTATGTGCTCTTGCCAAAGAACCAAC

---XXXXXXXXXXXXGXXXXXXXXXXXXXXLXXLILXXYVXGVSLNNQFXDQLKTXSFHI
HDAVIEKQVNNVAELINTVLSIAKDVFGCKSVYLSAQFAIVFYLIGCLSKCYQILPSSTL
VSSFPLLFQDSTLKRKKLLTNNSLKYVLLPKNQ

Frame A:
---xxxxxxxxxxxxxxxxxxxxxxxxxfxx*xx*fyxnmxkvyl*iinsxin*klsvsi
fmmlslknklimlln*stlf*vlqrtylvarvfisllnlpsffi*svv*anvikychpll
wfprflccsktlr*kersy*ptil*smcscqrtn


Frame B:
---xxxxxxxxxxxxxxxxxxxxxxxyxfxfnxfnfxxicxrcifk*six*siknxqfpy
s*cch*kts**cc*inqhcfkyckgriwlqeclslcsichrflfnrlfkqmlsntailyf
gflvsfvvprlyvekkevidqqfskvcalakep


Frame C:
---XXXXXXXXXXXXGXXXXXXXXXXXXXXLXXLILXXYVXGVSLNNQFXDQLKTXSFHI
HDAVIEKQVNNVAELINTVLSIAKDVFGCKSVYLSAQFAIVFYLIGCLSKCYQILPSSTL
VSSFPLLFQDSTLKRKKLLTNNSLKYVLLPKNQ

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFH653 (SFH653Q) /CSM/SF/SFH6-C/SFH653Q.Seq.d/                        690   0.0
VFJ186 (VFJ186Q) /CSM/VF/VFJ1-D/VFJ186Q.Seq.d/                        676   0.0
VHN302 (VHN302Q) /CSM/VH/VHN3-A/VHN302Q.Seq.d/                        672   0.0
VFN288 (VFN288Q) /CSM/VF/VFN2-D/VFN288Q.Seq.d/                        672   0.0
VFN287 (VFN287Q) /CSM/VF/VFN2-D/VFN287Q.Seq.d/                        672   0.0
VFM653 (VFM653Q) /CSM/VF/VFM6-C/VFM653Q.Seq.d/                        672   0.0
VFL582 (VFL582Q) /CSM/VF/VFL5-D/VFL582Q.Seq.d/                        672   0.0
VFK143 (VFK143Q) /CSM/VF/VFK1-B/VFK143Q.Seq.d/                        672   0.0
VFI243 (VFI243Q) /CSM/VF/VFI2-B/VFI243Q.Seq.d/                        672   0.0
VFG843 (VFG843Q) /CSM/VF/VFG8-B/VFG843Q.Seq.d/                        672   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AZ584787|AZ584787.1 1M0389K10R Mouse 10kb plasmid UUGC1M library Mus musculus genomic clone UUGC1M0389K10 R, genomic survey sequence.    46   0.42   1
AC117567|AC117567.5 Mus musculus clone RP24-380O24, WORKING DRAFT SEQUENCE, 6 unordered pieces.    46   0.42   1
AZ507725|AZ507725.1 1M0349D02R Mouse 10kb plasmid UUGC1M library Mus musculus genomic clone UUGC1M0349D02 R, DNA sequence.    46   0.42   1
AC090859|AC090859.1 Homo sapiens chromosome 15 clone RP11-127C24 map 15, LOW-PASS SEQUENCE SAMPLING.    34   1.1    4
AC105519|AC105519.4 Rattus norvegicus clone CH230-23K8, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    44   1.7    1
AL713868|AL713868.12 Human DNA sequence from clone RP11-488L4 on chromosome 1.    38   3.8    2
AL844599|AL844599.3 Mouse DNA sequence from clone RP24-129L11 on chromosome 4.    32   5.1    5
AC113464|AC113464.4 Mus musculus clone RP23-183P1, WORKING DRAFT SEQUENCE, 15 unordered pieces.    34   5.9    5
AC118152|AC118152.6 Rattus norvegicus clone CH230-234D9, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    42   6.5    1
AC128997|AC128997.6 Rattus norvegicus clone CH230-10I24, WORKING DRAFT SEQUENCE, 2 unordered pieces.    42   6.5    1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ158858_33(DQ158858|pid:none) Bigelowiella natans nucleomorph c...    33   2.9
EU966304_1(EU966304|pid:none) Zea mays clone 293301 reticulon mR...    26   5.3
BT040330_1(BT040330|pid:none) Zea mays full-length cDNA clone ZM...    26   5.3

 psg: 0.87  gvh: 0.65  alm: 0.30  top: 0.47  tms: 0.07  mit: 0.19  mip: 0.00
 nuc: 0.04  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.22  leu: 0.33  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 1.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 32.0 %: extracellular, including cell wall
	 32.0 %: plasma membrane
	 20.0 %: endoplasmic reticulum
	 12.0 %: Golgi
	  4.0 %: nuclear

>> prediction for SFH653 is exc

>SFH653Z.Seq
NNNNNNNNNNTNTNNTNTNNNNNNGNNNNTANAGNNNNNTTNNNTNNNNGGNTANNNAGN
NNTNNNTGNNNNNATNNNNTNTATNNTTTTNCNTTTAATNTNTTTAATTTTATNNNAATA
TGTTNAAGGTGTATCTTTAAATAATCAATTCANTGATCAATTAAAAACTNTCAGTTTCCA
TATTCATGATGCTGTCATTGAAAAACAAGTTAATAATGTTGCTGAATTAATCAACACTGT
TTTAAGTATTGCAAAGGACGTATTTGGTTGCAAGAGTGTTTATCTCTCTGCTCAATTTGC
CATCGTTTTTTATTTAATCGGTTGTTTAAGCAAATGTTATCAAATACTGCCATCCTCTAC
TTTGGTTTCCTCGTTTCCTTTGTTGTTCCAAGACTCTACGTTGAAAAGAAAGAAGTTATT
GACCAACAATTCTCTAAAGTATGTGCTCTTGCCAAAGAACCAAC