SFH626
Library SF
(Link to library)
Clone ID SFH626
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13840-1
Original site URL
Representative seq. ID SFH626P
(Link to Original site)
Representative DNA sequence
>SFH626 (SFH626Q) /CSM/SF/SFH6-B/SFH626Q.Seq.d/
CTGTTGGCCTAATAAAACCCAAATATTAAAATGAGCGATATTCAATACTCAAAATACGTT
TCAAATCAATATGGTTTTGAACTTGAATATCCATCAAATTGGGATAGTAAAGGAACATTC
AGCAATGTTTTTAGCATCTTTCATGGAATCAAACGATAAAAACTCACCAXXXXXXXXXXT
TATCGTGCTNTTCGTGTCANTATGGATGGTCGTGNTCCTGNNATCGATAAAGATTGTNNA
GTCATCATTCAATGTGCTGTCGTTCNGCGTACAAANGGNNTNTTATTAAATAANTCGTCT
TCCAAAAAATATTTTCGACACTGCTTATNGNTTTTTCTT
sequence update 2001.11.22
Translated Amino Acid sequence
cwpnktqilk*AIFNTQNTFQINMVLNLNIHQIGIVKEHSAMFLASFMESNDKNSP---

---YRAXRVXMDGRXPXIDKDCXVIIQCAVVXRTXGXLLNXSSSKKYFRHCLXXFL


Translated Amino Acid sequence (All Frames)
Frame A:
lla**npnikmsdiqyskyvsnqygfeleypsnwdskgtfsnvfsifhgikr*klt---

---lscxscxygwsxsxxr*rlxshhsmccrsaykxxxik*xvfqkifstllxxfs

Frame B:
cwpnktqilk*AIFNTQNTFQINMVLNLNIHQIGIVKEHSAMFLASFMESNDKNSP---

---YRAXRVXMDGRXPXIDKDCXVIIQCAVVXRTXGXLLNXSSSKKYFRHCLXXFL

Frame C:
vglikpky*nerysilkirfksiwf*t*isiklg**rniqqcf*hlswnqtikth---

---ivlfvsxwmvvxlxsikivxssfnvlsfxvqxxxy*ixrlpknifdtayxff

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SFH626 (SFH626Q) /CSM/SF/SFH6-B/SFH626Q.Seq.d/ 523 e-148
VFK321 (VFK321Q) /CSM/VF/VFK3-A/VFK321Q.Seq.d/ 297 6e-80
VFK269 (VFK269Q) /CSM/VF/VFK2-C/VFK269Q.Seq.d/ 297 6e-80
VFI524 (VFI524Q) /CSM/VF/VFI5-A/VFI524Q.Seq.d/ 297 6e-80
VFD288 (VFD288Q) /CSM/VF/VFD2-D/VFD288Q.Seq.d/ 297 6e-80
VFA865 (VFA865Q) /CSM/VF/VFA8-C/VFA865Q.Seq.d/ 297 6e-80
CHC532 (CHC532Q) /CSM/CH/CHC5-B/CHC532Q.Seq.d/ 297 6e-80
AFO550 (AFO550Q) /CSM/AF/AFO5-C/AFO550Q.Seq.d/ 297 6e-80
AFA380 (AFA380Q) /CSM/AF/AFA3-D/AFA380Q.Seq.d/ 297 6e-80
VFM127 (VFM127Q) /CSM/VF/VFM1-B/VFM127Q.Seq.d/ 291 3e-78

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AX348421|AX348421.1 Sequence 116 from Patent WO0202806. 46 0.079 2
AX346531|AX346531.1 Sequence 1602 from Patent WO0200928. 46 0.079 2
AL359636|AL359636.17 Human DNA sequence from clone RP11-542K23 on chromosome 9. 44 1.2 1
AC011764|AC011764.5 Drosophila melanogaster chromosome 2 clone BACR10I13 (D1154) RPCI-98 10.I.13 map 40A-40A strain y; cn bw sp, *** SEQUENCING IN PROGRESS ***, 67 unordered pieces. 34 2.3 5
CG676169|CG676169.1 trs3901 trs Aegilops tauschii genomic clone trs13M11, genomic survey sequence. 42 4.7 1
AC098145|AC098145.6 Rattus norvegicus clone CH230-172C14, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces. 42 4.7 1
AX345863|AX345863.1 Sequence 934 from Patent WO0200928. 42 4.7 1
AC103735|AC103735.1 Homo sapiens chromosome 11 clone RP11-626O18 map 11, LOW-PASS SEQUENCE SAMPLING. 32 5.5 5
AC005273|AC005273.1 Homo sapiens chromosome 17, clone hRPK.879_D_6, complete sequence. 36 8.2 3
AP001930|AP001930.4 Homo sapiens genomic DNA, chromosome 11q clone:RP11-669L23, complete sequences. 34 8.3 4
dna update 2003.12.14
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

CP000117_4740(CP000117|pid:none) Anabaena variabilis ATCC 29413,... 39 0.055

protein update 2009. 1.11
PSORT

psg: 0.84 gvh: 0.41 alm: 0.40 top: 0.53 tms: 0.00 mit: 0.24 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

60.0 %: cytoplasmic
20.0 %: nuclear
8.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: vesicles of secretory system
4.0 %: endoplasmic reticulum

>> prediction for SFH626 is cyt

5' end seq. ID SFH626F
5' end seq.
>SFH626F.Seq
CTGTTGGCCTAATAAAACCCAAATATTAAAATGAGCGATATTCAATACTCAAAATACGTT
TCAAATCAATATGGTTTTGAACTTGAATATCCATCAAATTGGGATAGTAAAGGAACATTC
AGCAATGTTTTTAGCATCTTTCATGGAATCAAACGATAAAAACTCACCA----------
Length of 5' end seq. 169
3' end seq. ID SFH626Z
3' end seq.
>SFH626Z.Seq
NNNNNNNNNNTTATCGTGCTNTTCGTGTCANTATGGATGGTCGTGNTCCTGNNATCGATA
AAGATTGTNNAGTCATCATTCAATGTGCTGTCGTTCNGCGTACAAANGGNNTNTTATTAA
ATAANTCGTCTTCCAAAAAATATTTTCGACACTGCTTATNGNTTTTTCTT
Length of 3' end seq. 170
Connected seq. ID SFH626P
Connected seq.
>SFH626P.Seq
CTGTTGGCCTAATAAAACCCAAATATTAAAATGAGCGATATTCAATACTCAAAATACGTT
TCAAATCAATATGGTTTTGAACTTGAATATCCATCAAATTGGGATAGTAAAGGAACATTC
AGCAATGTTTTTAGCATCTTTCATGGAATCAAACGATAAAAACTCACCA----------T
TATCGTGCTNTTCGTGTCANTATGGATGGTCGTGNTCCTGNNATCGATAAAGATTGTNNA
GTCATCATTCAATGTGCTGTCGTTCNGCGTACAAANGGNNTNTTATTAAATAANTCGTCT
TCCAAAAAATATTTTCGACACTGCTTATNGNTTTTTCTT
Length of connected seq. 329
Full length Seq ID -
Full length Seq. -
Length of full length seq. -