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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFH608
Library SF
(Link to library)
Clone ID SFH608
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16243-1
Original site URL
Representative seq. ID SFH608P
(Link to Original site)
Representative DNA sequence 
>SFH608 (SFH608Q) /CSM/SF/SFH6-A/SFH608Q.Seq.d/
ACTGTTGGCCTACTGGNTTTTTCATATTTATATATAATATTACACCCCATAACTAATAAA
ATGTCATTCAATTCAAGAATTGAAACTATTTCTCGTCACTTAAGCACTGGGACCAATTTT
AGAATCAAATCCAACTTCTGGATCAGTTAAATCAGGGAGGTGATATTGTAATTGTTGCAC
CATTTCGTACAGCAATTTGTAAAGCTAAAAGAGGAGCATTCTAAGNAGACAGCACCAGNA
TGATTTATTAGCACCAGTTATTAAACATATTATCAAAGTTACCAAATTAGATCCAAAATT
AATTGGAGATGTTGTTATGGGAGCAGTATTACCAAGATCATCACAAGGTGCAACCGAAGT
TAGAGTTGCCACATTATATAGCAGGTTTACCXXXXXXXXXXTCTGAAAATGTCGCAGAGC
GTTTTGGTGTCACCAGAAAAGACCAAGATGAATTCTCTGCAAATTCACACAAGAAGGCAG
GTGCCGCCCAAAAAGCAGGTAAATTTGACGATGAAATCGTTCCAGTCACCGTAAAGACCG
AGGATGGCAAAACCATCGTCGTCGATAAAGACGAAGGTATCCGTGAGAAAACCACCGTTG
CAGATTTGGCCAAATTAAAACCAGCTTTCAAAGAGGGTGGTACAACCACCGCTGGTAACT
CTAGTCAAATGAGTGATGGTGCCGCCGCTTGTTTAGTTATGAAAAGAAGTACCGCCGAAA
GATTGGGTCTCAAGGTTGAATTGGTTTTCGTAGCTTTTGCTGCTGTCGGTGTCGAACCAT
CCATTATGGGTATTGGTCCAGCCGTTGCAATTCCAGCCGCCTTAAAACAAGCTGGTCTCA
CCACTAAAGATATCGACGTTTTTGAAATCAATGAAGCTTTTGCTTCTCAAGCATTTTACA
GTTGTAAGGTTTTGGGTTTGGATATGAACAAAGTTAATCCAAATGGCTCTGGTATCGCTT
TAGGTCATCCATTAGGTGCTACTGGTGCCCGTCAAATGGCTACCATTTCAAGAGAATTAC
ATCGTCGTAAAGGTAAATATGGTGTAATCTCTATGTGTAT
sequence update 2001.11.22
Translated Amino Acid sequence 
llaywxfhiyi*yytp*likchsiqelklflvt*algpilesnptsgsvksgr*ycncct
isysnl*s*KRSILXRQHQXDLLAPVIKHIIKVTKLDPKLIGDVVMGAVLPRSSQGATEV
RVATLYSRFT---

---SENVAERFGVTRKDQDEFSANSHKKAGAAQKAGKFDDEIVPVTVKTEDGKTIVVDKD
EGIREKTTVADLAKLKPAFKEGGTTTAGNSSQMSDGAAACLVMKRSTAERLGLKVELVFV
AFAAVGVEPSIMGIGPAVAIPAALKQAGLTTKDIDVFEINEAFASQAFYSCKVLGLDMNK
VNPNGSGIALGHPLGATGARQMATISRELHRRKGKYGVISMC
Translated Amino Acid sequence (All Frames) 
Frame A:
tvgllxfsylyiilhpitnkmsfnsrietisrhlstgtnfriksnfwis*irevil*llh
hfvqqfvklkeehskxtapx*fistsy*tyyqsyqirskinwrccygssitkiitrcnrs
*schii*qvy---

---SENVAERFGVTRKDQDEFSANSHKKAGAAQKAGKFDDEIVPVTVKTEDGKTIVVDKD
EGIREKTTVADLAKLKPAFKEGGTTTAGNSSQMSDGAAACLVMKRSTAERLGLKVELVFV
AFAAVGVEPSIMGIGPAVAIPAALKQAGLTTKDIDVFEINEAFASQAFYSCKVLGLDMNK
VNPNGSGIALGHPLGATGARQMATISRELHRRKGKYGVISMC

Frame B:
llaywxfhiyi*yytp*likchsiqelklflvt*algpilesnptsgsvksgr*ycncct
isysnl*s*KRSILXRQHQXDLLAPVIKHIIKVTKLDPKLIGDVVMGAVLPRSSQGATEV
RVATLYSRFT---

---lkmsqsvlvspektkmnslqihtrrqvppkkqvnltmksfqsp*rprmakpsssikt
kvsvrkpplqiwpn*nqlskrvvqpplvtlvk*vmvpplv*l*kevppkdwvsrlnwfs*
llllsvsnhplwvlvqplqfqpp*nklvsplkistflksmkllllkhftvvrfwvwi*tk
liqmalvsl*vih*vllvpvkwlpfqenyivvkvnmv*slcv

Frame C:
cwptgffifiynitphn**nviqfkn*nyfsslkhwdqf*nqiqlldqlnqggdivivap
frtaickakrgaf*xdstxmiy*hqllnilsklpn*iqn*lemllweqyyqdhhkvqpkl
elphyiagl---

---*kcrrafwchqkrpr*ilckftqegrcrpksr*i*r*nrsshrkdrgwqnhrrr*rr
ryp*enhrcrfgqiktsfqrgwynhrw*l*sne*wcrrlfsyekkyrrkigsqg*igfrs
fcccrcrtihygywssrcnssrlktswshh*ryrrf*nq*sfcfssilql*gfgfgyeqs
*skwlwyrfrssircywcpsngyhfkritss*r*iwcnlyvy
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFH608 (SFH608Q) /CSM/SF/SFH6-A/SFH608Q.Seq.d/                       2024   0.0
VFE239 (VFE239Q) /CSM/VF/VFE2-B/VFE239Q.Seq.d/                       1298   0.0
SLG762 (SLG762Q) /CSM/SL/SLG7-C/SLG762Q.Seq.d/                       1298   0.0
SFH501 (SFH501Q) /CSM/SF/SFH5-A/SFH501Q.Seq.d/                       1298   0.0
SFG758 (SFG758Q) /CSM/SF/SFG7-C/SFG758Q.Seq.d/                       1298   0.0
SFG482 (SFG482Q) /CSM/SF/SFG4-D/SFG482Q.Seq.d/                       1298   0.0
SFA524 (SFA524Q) /CSM/SF/SFA5-A/SFA524Q.Seq.d/                       1298   0.0
CHB394 (CHB394Q) /CSM/CH/CHB3-D/CHB394Q.Seq.d/                       1298   0.0
CFF662 (CFF662Q) /CSM/CF/CFF6-C/CFF662Q.Seq.d/                       1298   0.0
CFC557 (CFC557Q) /CSM/CF/CFC5-C/CFC557Q.Seq.d/                       1298   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.  1298   0.0    12
AU089542|AU089542.1 Lotus japonicus flower bud cDNA clone: Ljfb-v09.    44   2e-10  4
BM065622|BM065622.1 KS07005E12 KS07 Capsicum annuum cDNA, mRNA sequence.    68   8e-10  3
CB008288|CB008288.1 VVC055H06_148036 An expressed sequence tag database for abiotic stressed berries of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVC055H06 5, mRNA sequence.    60   1e-09  3
CB005315|CB005315.1 VVC011E10_126660 An expressed sequence tag database for abiotic stressed berries of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVC011E10 5, mRNA sequence.    60   1e-09  3
CD007738|CD007738.1 VVB078G11_334604 An expressed sequence tag database for abiotic stressed leaves of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVB078G11 5, mRNA sequence.    60   2e-08  2
CA515447|CA515447.1 KS09042A06 KS09 Capsicum annuum cDNA, mRNA sequence.    68   2e-08  2
CD716621|CD716621.1 VVB129E11_405541 An expressed sequence tag database for abiotic stressed leaves of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVB129E11 5, mRNA sequence.    60   2e-08  2
CD008871|CD008871.1 VVB097G11_339261 An expressed sequence tag database for abiotic stressed leaves of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVB097G11 5, mRNA sequence.    60   2e-08  2
CD719494|CD719494.1 VVB161G09_410895 An expressed sequence tag database for abiotic stressed leaves of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVB161G09 5, mRNA sequence.    60   2e-08  2
dna update 2003.12.14
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116986_75(AC116986|pid:none) Dictyostelium discoideum chromoso...   401   e-110
FJ502019_1(FJ502019|pid:none) Aristichthys nobilis clone A101 ac...   250   5e-65
EU964831_1(EU964831|pid:none) Zea mays clone 281881 3-ketoacyl-C...   249   1e-64
BT034496_1(BT034496|pid:none) Zea mays full-length cDNA clone ZM...   249   1e-64
AC126019_22(AC126019|pid:none) Medicago truncatula clone mth2-22...   247   5e-64
J02749_1(J02749|pid:none) Rat peroxisomal 3-ketoacyl-CoA thiolas...   246   9e-64
(P21775) RecName: Full=3-ketoacyl-CoA thiolase A, peroxisomal;  ...   246   9e-64
AK160568_1(AK160568|pid:none) Mus musculus ES cells cDNA, RIKEN ...   246   9e-64
(Q8VCH0) RecName: Full=3-ketoacyl-CoA thiolase B, peroxisomal;  ...   246   9e-64
M32801_1(M32801|pid:none) Rat 3-ketoacyl-CoA thiolase 2 mRNA, co...   246   1e-63
protein update 2009. 5.25
PSORT 

 psg: 0.62  gvh: 0.70  alm: 0.28  top: 0.33  tms: 0.07  mit: 0.34  mip: 0.03
 nuc: 0.02  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.03  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 36.0 %: mitochondrial
	 20.0 %: Golgi
	 20.0 %: nuclear
	  8.0 %: cytoplasmic
	  8.0 %: endoplasmic reticulum
	  4.0 %: vacuolar
	  4.0 %: peroxisomal

>> prediction for SFH608 is mit
5' end seq. ID SFH608F
5' end seq. 
>SFH608F.Seq
ACTGTTGGCCTACTGGNTTTTTCATATTTATATATAATATTACACCCCATAACTAATAAA
ATGTCATTCAATTCAAGAATTGAAACTATTTCTCGTCACTTAAGCACTGGGACCAATTTT
AGAATCAAATCCAACTTCTGGATCAGTTAAATCAGGGAGGTGATATTGTAATTGTTGCAC
CATTTCGTACAGCAATTTGTAAAGCTAAAAGAGGAGCATTCTAAGNAGACAGCACCAGNA
TGATTTATTAGCACCAGTTATTAAACATATTATCAAAGTTACCAAATTAGATCCAAAATT
AATTGGAGATGTTGTTATGGGAGCAGTATTACCAAGATCATCACAAGGTGCAACCGAAGT
TAGAGTTGCCACATTATATAGCAGGTTTACC----------
Length of 5' end seq. 391
3' end seq. ID SFH608Z
3' end seq. 
>SFH608Z.Seq
NNNNNNNNNNTCTGAAAATGTCGCAGAGCGTTTTGGTGTCACCAGAAAAGACCAAGATGA
ATTCTCTGCAAATTCACACAAGAAGGCAGGTGCCGCCCAAAAAGCAGGTAAATTTGACGA
TGAAATCGTTCCAGTCACCGTAAAGACCGAGGATGGCAAAACCATCGTCGTCGATAAAGA
CGAAGGTATCCGTGAGAAAACCACCGTTGCAGATTTGGCCAAATTAAAACCAGCTTTCAA
AGAGGGTGGTACAACCACCGCTGGTAACTCTAGTCAAATGAGTGATGGTGCCGCCGCTTG
TTTAGTTATGAAAAGAAGTACCGCCGAAAGATTGGGTCTCAAGGTTGAATTGGTTTTCGT
AGCTTTTGCTGCTGTCGGTGTCGAACCATCCATTATGGGTATTGGTCCAGCCGTTGCAAT
TCCAGCCGCCTTAAAACAAGCTGGTCTCACCACTAAAGATATCGACGTTTTTGAAATCAA
TGAAGCTTTTGCTTCTCAAGCATTTTACAGTTGTAAGGTTTTGGGTTTGGATATGAACAA
AGTTAATCCAAATGGCTCTGGTATCGCTTTAGGTCATCCATTAGGTGCTACTGGTGCCCG
TCAAATGGCTACCATTTCAAGAGAATTACATCGTCGTAAAGGTAAATATGGTGTAATCTC
TATGTGTAT
Length of 3' end seq. 669
Connected seq. ID SFH608P
Connected seq. 
>SFH608P.Seq
ACTGTTGGCCTACTGGNTTTTTCATATTTATATATAATATTACACCCCATAACTAATAAA
ATGTCATTCAATTCAAGAATTGAAACTATTTCTCGTCACTTAAGCACTGGGACCAATTTT
AGAATCAAATCCAACTTCTGGATCAGTTAAATCAGGGAGGTGATATTGTAATTGTTGCAC
CATTTCGTACAGCAATTTGTAAAGCTAAAAGAGGAGCATTCTAAGNAGACAGCACCAGNA
TGATTTATTAGCACCAGTTATTAAACATATTATCAAAGTTACCAAATTAGATCCAAAATT
AATTGGAGATGTTGTTATGGGAGCAGTATTACCAAGATCATCACAAGGTGCAACCGAAGT
TAGAGTTGCCACATTATATAGCAGGTTTACC----------TCTGAAAATGTCGCAGAGC
GTTTTGGTGTCACCAGAAAAGACCAAGATGAATTCTCTGCAAATTCACACAAGAAGGCAG
GTGCCGCCCAAAAAGCAGGTAAATTTGACGATGAAATCGTTCCAGTCACCGTAAAGACCG
AGGATGGCAAAACCATCGTCGTCGATAAAGACGAAGGTATCCGTGAGAAAACCACCGTTG
CAGATTTGGCCAAATTAAAACCAGCTTTCAAAGAGGGTGGTACAACCACCGCTGGTAACT
CTAGTCAAATGAGTGATGGTGCCGCCGCTTGTTTAGTTATGAAAAGAAGTACCGCCGAAA
GATTGGGTCTCAAGGTTGAATTGGTTTTCGTAGCTTTTGCTGCTGTCGGTGTCGAACCAT
CCATTATGGGTATTGGTCCAGCCGTTGCAATTCCAGCCGCCTTAAAACAAGCTGGTCTCA
CCACTAAAGATATCGACGTTTTTGAAATCAATGAAGCTTTTGCTTCTCAAGCATTTTACA
GTTGTAAGGTTTTGGGTTTGGATATGAACAAAGTTAATCCAAATGGCTCTGGTATCGCTT
TAGGTCATCCATTAGGTGCTACTGGTGCCCGTCAAATGGCTACCATTTCAAGAGAATTAC
ATCGTCGTAAAGGTAAATATGGTGTAATCTCTATGTGTAT
Length of connected seq. 1050
Full length Seq ID -
Full length Seq. -
Length of full length seq. -