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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFH573
Library SF
(Link to library)
Clone ID SFH573
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13863-1
Original site URL
Representative seq. ID SFH573P
(Link to Original site)
Representative DNA sequence 
>SFH573 (SFH573Q) /CSM/SF/SFH5-D/SFH573Q.Seq.d/
ACTGTTGGCCTACTGGNAATATTAATAGTAATTATTTTTTTTTTCCTTCCCTCATTATTT
TTTTTAAATAATAAATAAACATATCCAANGATNGATTCAGATATAGAATTAAATAAAATA
ATAGTAGTNCCATTAATATCAAAGGTTTCATTAGATATTAANGATGCAAAAAATTACTAT
GGAACCGAGTTATACCCAAATCAACCAATTCCAACCATAGTTTCAGCTCAATCTGANGTA
GATTCTTTAATTAATCAAACTTCTGGTAATAATGATGAAGAANGATTAGTTTTATTATTA
AAACANCAXXXXXXXXXXGTTTCCNTAAAGCTATTGNATGNGNTGNTGATGGTAATACAT
CTTCTGGCTCTGNANCCGNTGNGCTTCNCCCAGATGGGACNTCNTTTGATATTCAAAACT
TNATTTTAATGCAAAAATCCCNACNACCCAAATAGATAAAAAAAAAAAAATTTTTAGTAA
TCACTTTTTTTCCCAATATTTTTCTTTACAGAATAATAAATAATAAATAAAT
sequence update 2001.11.22
Translated Amino Acid sequence 
tvgllxiliviiffflpslfflnnk*TYPXXDSDIELNKIIVVPLISKVSLDIXDAKNYY
GTELYPNQPIPTIVSAQSXVDSLINQTSGNNDEEXLVLLLKX---

---FXKAIXXXXDGNTSSGSXXXXLXPDGTSFDIQNXILMQKSXXPK*ikkkkflvitff
pniflyriinnk*
Translated Amino Acid sequence (All Frames) 
Frame A:
tvgllxiliviiffflpslfflnnk*TYPXXDSDIELNKIIVVPLISKVSLDIXDAKNYY
GTELYPNQPIPTIVSAQSXVDSLINQTSGNNDEEXLVLLLKX---

---vsxkllxxxxmvihllalxpxxfxqmgxxlifktxf*cknpxxpnr*kkknf**slf
fpifffte**iink

Frame B:
llaywxy***lfffsfphyff*iinkhiqxxiqi*n*ik***xh*yqrfh*ilxmqkitm
epsytqinqfqp*fqlnlx*il*likllvimmkxd*fyy*nx---

---fp*syxmxx*w*yifwlxxrxasprwdxx*ysklxfnakipttqidkkkkifsnhff
sqyfslqnnk**in

Frame C:
cwptgninsnyfffpsliiffk**inisxdxfryrik*nnssxinikgfiry*xckkllw
nrvipkstnsnhsfssi*xrffn*snfw****rxisfiiktx---

---FXKAIXXXXDGNTSSGSXXXXLXPDGTSFDIQNXILMQKSXXPK*ikkkkflvitff
pniflyriinnk*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFH573 (SFH573Q) /CSM/SF/SFH5-D/SFH573Q.Seq.d/                        603   e-171
SLA592 (SLA592Q) /CSM/SL/SLA5-D/SLA592Q.Seq.d/                        416   e-115
SFJ562 (SFJ562Q) /CSM/SF/SFJ5-C/SFJ562Q.Seq.d/                        416   e-115
SFD294 (SFD294Q) /CSM/SF/SFD2-D/SFD294Q.Seq.d/                        416   e-115
AFL119 (AFL119Q) /CSM/AF/AFL1-A/AFL119Q.Seq.d/                        416   e-115
AFJ338 (AFJ338Q) /CSM/AF/AFJ3-B/AFJ338Q.Seq.d/                        416   e-115
AFI685 (AFI685Q) /CSM/AF/AFI6-D/AFI685Q.Seq.d/                        416   e-115
AFH395 (AFH395Q) /CSM/AF/AFH3-D/AFH395Q.Seq.d/                        416   e-115
AFL454 (AFL454Q) /CSM/AF/AFL4-C/AFL454Q.Seq.d/                        408   e-113
AFL703 (AFL703Q) /CSM/AF/AFL7-A/AFL703Q.Seq.d/                        406   e-112
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AE014820|AE014820.1 Plasmodium falciparum 3D7 chromosome 14 section 5 of 13 of the complete sequence.    34   8e-05  10
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    32   0.002  11
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence.    36   0.002  10
AL034557|AL034557.8 Plasmodium falciparum MAL4P1.                  34   0.005  11
AJ404228|AJ404228.1 Saccharomyces douglasii mitochondrial tRNA gene cluster.    38   0.011  4
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    34   0.011  11
AC117076|AC117076.2 Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence.    32   0.018  10
AC115599|AC115599.2 Dictyostelium discoideum chromosome 2 map 4229098-4354721 strain AX4, complete sequence.    34   0.018  8
AE014821|AE014821.1 Plasmodium falciparum 3D7 chromosome 14 section 6 of 13 of the complete sequence.    36   0.024  9
AL929352|AL929352.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 2/4.    32   0.027  10
dna update 2003.12.13
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VGIHE3(JS0336)E2 glycoprotein precursor - porcine transmissible ...    33   5.6
AJ271965_3(AJ271965|pid:none) Transmissible gastroenteritis viru...    33   5.6
FJ755618_3(FJ755618|pid:none) Transmissible gastroenteritis viru...    33   5.6
AY796289_1(AY796289|pid:none) Canine coronavirus 1-71 spike prot...    33   5.6
EU924791_1(EU924791|pid:none) Canine coronavirus strain 119/08 s...    33   5.6
A11321_1(A11321|pid:none) Artificial TGEV peplomer (E2) gene.          33   5.6
AY390342_1(AY390342|pid:none) Canine coronavirus strain v1 spike...    33   5.6
S47423(S65851;S47423) E2 glycoprotein precursor - porcine transm...    33   5.6
EU856361_3(EU856361|pid:none) Canine coronavirus strain 341/05 p...    33   5.6
EU074218_3(EU074218|pid:none) Transmissible gastroenteritis viru...    33   5.6
protein update 2009. 5.25
PSORT 

 psg: 0.75  gvh: 0.41  alm: 0.37  top: 0.53  tms: 0.00  mit: 0.17  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: cytoplasmic
	 32.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vesicles of secretory system

>> prediction for SFH573 is cyt
5' end seq. ID SFH573F
5' end seq. 
>SFH573F.Seq
ACTGTTGGCCTACTGGNAATATTAATAGTAATTATTTTTTTTTTCCTTCCCTCATTATTT
TTTTTAAATAATAAATAAACATATCCAANGATNGATTCAGATATAGAATTAAATAAAATA
ATAGTAGTNCCATTAATATCAAAGGTTTCATTAGATATTAANGATGCAAAAAATTACTAT
GGAACCGAGTTATACCCAAATCAACCAATTCCAACCATAGTTTCAGCTCAATCTGANGTA
GATTCTTTAATTAATCAAACTTCTGGTAATAATGATGAAGAANGATTAGTTTTATTATTA
AAACANCA----------
Length of 5' end seq. 308
3' end seq. ID SFH573Z
3' end seq. 
>SFH573Z.Seq
NNNNNNNNNNGTTTCCNTAAAGCTATTGNATGNGNTGNTGATGGTAATACATCTTCTGGC
TCTGNANCCGNTGNGCTTCNCCCAGATGGGACNTCNTTTGATATTCAAAACTTNATTTTA
ATGCAAAAATCCCNACNACCCAAATAGATAAAAAAAAAAAAATTTTTAGTAATCACTTTT
TTTCCCAATATTTTTCTTTACAGAATAATAAATAATAAATAAAT
Length of 3' end seq. 224
Connected seq. ID SFH573P
Connected seq. 
>SFH573P.Seq
ACTGTTGGCCTACTGGNAATATTAATAGTAATTATTTTTTTTTTCCTTCCCTCATTATTT
TTTTTAAATAATAAATAAACATATCCAANGATNGATTCAGATATAGAATTAAATAAAATA
ATAGTAGTNCCATTAATATCAAAGGTTTCATTAGATATTAANGATGCAAAAAATTACTAT
GGAACCGAGTTATACCCAAATCAACCAATTCCAACCATAGTTTCAGCTCAATCTGANGTA
GATTCTTTAATTAATCAAACTTCTGGTAATAATGATGAAGAANGATTAGTTTTATTATTA
AAACANCA----------GTTTCCNTAAAGCTATTGNATGNGNTGNTGATGGTAATACAT
CTTCTGGCTCTGNANCCGNTGNGCTTCNCCCAGATGGGACNTCNTTTGATATTCAAAACT
TNATTTTAATGCAAAAATCCCNACNACCCAAATAGATAAAAAAAAAAAAATTTTTAGTAA
TCACTTTTTTTCCCAATATTTTTCTTTACAGAATAATAAATAATAAATAAAT
Length of connected seq. 522
Full length Seq ID -
Full length Seq. -
Length of full length seq. -