SFH572
Library SF
(Link to library)
Clone ID SFH572
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16358-1
Original site URL
Representative seq. ID SFH572P
(Link to Original site)
Representative DNA sequence
>SFH572 (SFH572Q) /CSM/SF/SFH5-C/SFH572Q.Seq.d/
ACTGTTGGCCTACTGGNACAAAAAACATTTTCTAATAAAACAGNATAAATTAAAAAATGA
CTACCTTTAACGAATATCCATTCTTGGCTGAATTAGGCATTAAAGCTGAAAATAATGATG
GAGTCTTCAATGGAAAATGGGGAGGTGCTGGTGAAATCATCAAATGTTTAAATCCAACAA
ATAATAAAGTTATTGCAACTGTTAGAGGTGCTGCACCAGAAGAATATGAAACATGTATTC
AAGCAATGTTAGCAGCAAAAGTAAAATGGGCATTAACACCAGCTCCAAGAAGAGGTGAAA
TTGTTAGATTAATTGGTCAAGCCATGAGAGAAAAAATTGAACCATTATCAAAATTAATTT
CATTAGAAATGGGTAAAATTTACATTGAAGCTAAAGGTGAAGTACAAGAATTCATTGACG
TATGCGATTATGCAACTGGTTTAAGTAGATCAATCAATGGTCAAGTGATGCCATCTGAAC
GTCCAAATCACATTTTAATGGAAACCTGGAATCCATTAGGTTTAGTTGGTATCATTACTG
CTTTCAATTTCCCATGTGCCGTXXXXXXXXXXTCTCTCATCTTCCCNCTTCNCAAACAAT
CAAAAGAATATCTTCAAATGGCTTGGACCTACCGGATCTGACTGTGGTATAGTTAACGTA
AATGTAGCTACAAACGGTGCTGAAATTGGTGGTGCCTTTGGAGGTGAAAAAGAGCACCGG
AGGTGGTAGAGAATCTGGCTCAGACAGCTGGAAACAGTATTGCCGNCNNAGTACTAATAC
AATC
sequence update 2001.11.22
Translated Amino Acid sequence
cwptgtknif**nxin*KMTTFNEYPFLAELGIKAENNDGVFNGKWGGAGEIIKCLNPTN
NKVIATVRGAAPEEYETCIQAMLAAKVKWALTPAPRRGEIVRLIGQAMREKIEPLSKLIS
LEMGKIYIEAKGEVQEFIDVCDYATGLSRSINGQVMPSERPNHILMETWNPLGLVGIITA
FNFPCA---

---LSSSXFXNNQKNIFKWLGPTGSDCGIVNVNVATNGAEIGGAFGGEKEHRRW*riwlr
qletvlpxxy*yn


Translated Amino Acid sequence (All Frames)
Frame A:
tvgllxqktfsnktx*ikk*lpltnihswln*alklkimmessmengevlvkssnv*iqq
iikllqllevlhqknmkhvfkqc*qqk*ngh*hqlqeevklld*lvkp*ekklnhyqn*f
h*kwvkftlklkvkyknsltyaimqlv*vdqsmvk*chlnvqitf*wkpgih*v*lvsll
lsishvp---

---slifplxkqskeylqmawtyri*lwys*rkcsykrc*nwwclwr*krapevvenlaq
tagnsiaxxvliq

Frame B:
llaywxkkhflikqxklkndyl*risilg*irh*s*k**wslqwkmgrcw*nhqmfksnk
**sycnc*rcctrri*nmyssnvsskskmgintsskkr*nc*inwssherkn*tiikinf
irng*nlh*s*r*strih*rmrlcnwfk*inqwssdai*tskshfngnlesirfswyhyc
fqfpmcr---

---LSSSXFXNNQKNIFKWLGPTGSDCGIVNVNVATNGAEIGGAFGGEKEHRRW*riwlr
qletvlpxxy*yn

Frame C:
cwptgtknif**nxin*KMTTFNEYPFLAELGIKAENNDGVFNGKWGGAGEIIKCLNPTN
NKVIATVRGAAPEEYETCIQAMLAAKVKWALTPAPRRGEIVRLIGQAMREKIEPLSKLIS
LEMGKIYIEAKGEVQEFIDVCDYATGLSRSINGQVMPSERPNHILMETWNPLGLVGIITA
FNFPCA---

---shlpxsqtikrissngldlpdltvv*lt*m*lqtvlklvvplevkkstgggresgsd
swkqycrxstnti

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SFH572 (SFH572Q) /CSM/SF/SFH5-C/SFH572Q.Seq.d/ 1453 0.0
AFA304 (AFA304Q) /CSM/AF/AFA3-A/AFA304Q.Seq.d/ 1102 0.0
CHA156 (CHA156Q) /CSM/CH/CHA1-C/CHA156Q.Seq.d/ 1100 0.0
SFH846 (SFH846Q) /CSM/SF/SFH8-B/SFH846Q.Seq.d/ 1086 0.0
SFC444 (SFC444Q) /CSM/SF/SFC4-B/SFC444Q.Seq.d/ 1082 0.0
CFC708 (CFC708Q) /CSM/CF/CFC7-A/CFC708Q.Seq.d/ 1082 0.0
CHC111 (CHC111Q) /CSM/CH/CHC1-A/CHC111Q.Seq.d/ 1080 0.0
VFN466 (VFN466Q) /CSM/VF/VFN4-C/VFN466Q.Seq.d/ 1076 0.0
SFI194 (SFI194Q) /CSM/SF/SFI1-D/SFI194Q.Seq.d/ 1074 0.0
CHE175 (CHE175Q) /CSM/CH/CHE1-D/CHE175Q.Seq.d/ 1072 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC117072|AC117072.2 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence. 700 0.0 8
D88434|D88434.1 Malus domestica mRNA for protein abundantly expressed during apple fruit development, complete cds. 60 5e-14 2
BU042811|BU042811.1 PP_LEa0014A23f Peach developing fruit mesocarp Prunus persica cDNA clone PP_LEa0014A23f, mRNA sequence. 68 3e-10 2
I16834|I16834.1 Sequence 3 from patent US 5480795. 72 1e-08 1
E16764|E16764.1 cDNA encoding curculin. 72 1e-08 1
E07845|E07845.1 DNA sequence encoding curculin B. 72 1e-08 1
X64110|X64110.1 C.latifolia mRNA CUR09 for curculin. 72 1e-08 1
CB209980|CB209980.1 OML00260 Oryza minuta HybriZAP-2.1 XR library Oryza minuta cDNA 5', mRNA sequence. 68 2e-07 1
BU023833|BU023833.1 QHF14B04.yg.ab1 QH_EFGHJ sunflower RHA280 Helianthus annuus cDNA clone QHF14B04, mRNA sequence. 64 3e-06 1
BU045895|BU045895.1 PP_LEa0024G21f Peach developing fruit mesocarp Prunus persica cDNA clone PP_LEa0024G21f, mRNA sequence. 64 3e-06 1
dna update 2003.12.13
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P83401) RecName: Full=Putative aldehyde dehydrogenase family 7 ... 345 9e-94
BC044367_1(BC044367|pid:none) Danio rerio aldehyde dehydrogenase... 211 2e-53
EF678715_1(EF678715|pid:none) Picea sitchensis clone WS0295_M17 ... 207 4e-52
BT044648_1(BT044648|pid:none) Salmo salar clone ssal-rgf-001-326... 206 8e-52
AY883858_1(AY883858|pid:none) Sterkiella histriomuscorum turgor ... 202 9e-51
AY847462_1(AY847462|pid:none) Acanthopagrus schlegelii antiquiti... 202 1e-50
AF323586_1(AF323586|pid:none) Oryza sativa aldehyde dehydrogenas... 201 3e-50
AK160117_1(AK160117|pid:none) Mus musculus osteoclast-like cell ... 198 1e-49
(Q9DBF1) RecName: Full=Alpha-aminoadipic semialdehyde dehydrogen... 198 1e-49
AK297365_1(AK297365|pid:none) Homo sapiens cDNA FLJ56008 complet... 197 3e-49
protein update 2009. 5.25
PSORT

psg: 0.78 gvh: 0.31 alm: 0.34 top: 0.53 tms: 0.00 mit: 0.21 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: cytoplasmic
44.0 %: nuclear
8.0 %: mitochondrial
4.0 %: plasma membrane

>> prediction for SFH572 is cyt

5' end seq. ID SFH572F
5' end seq.
>SFH572F.Seq
ACTGTTGGCCTACTGGNACAAAAAACATTTTCTAATAAAACAGNATAAATTAAAAAATGA
CTACCTTTAACGAATATCCATTCTTGGCTGAATTAGGCATTAAAGCTGAAAATAATGATG
GAGTCTTCAATGGAAAATGGGGAGGTGCTGGTGAAATCATCAAATGTTTAAATCCAACAA
ATAATAAAGTTATTGCAACTGTTAGAGGTGCTGCACCAGAAGAATATGAAACATGTATTC
AAGCAATGTTAGCAGCAAAAGTAAAATGGGCATTAACACCAGCTCCAAGAAGAGGTGAAA
TTGTTAGATTAATTGGTCAAGCCATGAGAGAAAAAATTGAACCATTATCAAAATTAATTT
CATTAGAAATGGGTAAAATTTACATTGAAGCTAAAGGTGAAGTACAAGAATTCATTGACG
TATGCGATTATGCAACTGGTTTAAGTAGATCAATCAATGGTCAAGTGATGCCATCTGAAC
GTCCAAATCACATTTTAATGGAAACCTGGAATCCATTAGGTTTAGTTGGTATCATTACTG
CTTTCAATTTCCCATGTGCCGT----------
Length of 5' end seq. 562
3' end seq. ID SFH572Z
3' end seq.
>SFH572Z.Seq
NNNNNNNNNNTCTCTCATCTTCCCNCTTCNCAAACAATCAAAAGAATATCTTCAAATGGC
TTGGACCTACCGGATCTGACTGTGGTATAGTTAACGTAAATGTAGCTACAAACGGTGCTG
AAATTGGTGGTGCCTTTGGAGGTGAAAAAGAGCACCGGAGGTGGTAGAGAATCTGGCTCA
GACAGCTGGAAACAGTATTGCCGNCNNAGTACTAATACAATC
Length of 3' end seq. 222
Connected seq. ID SFH572P
Connected seq.
>SFH572P.Seq
ACTGTTGGCCTACTGGNACAAAAAACATTTTCTAATAAAACAGNATAAATTAAAAAATGA
CTACCTTTAACGAATATCCATTCTTGGCTGAATTAGGCATTAAAGCTGAAAATAATGATG
GAGTCTTCAATGGAAAATGGGGAGGTGCTGGTGAAATCATCAAATGTTTAAATCCAACAA
ATAATAAAGTTATTGCAACTGTTAGAGGTGCTGCACCAGAAGAATATGAAACATGTATTC
AAGCAATGTTAGCAGCAAAAGTAAAATGGGCATTAACACCAGCTCCAAGAAGAGGTGAAA
TTGTTAGATTAATTGGTCAAGCCATGAGAGAAAAAATTGAACCATTATCAAAATTAATTT
CATTAGAAATGGGTAAAATTTACATTGAAGCTAAAGGTGAAGTACAAGAATTCATTGACG
TATGCGATTATGCAACTGGTTTAAGTAGATCAATCAATGGTCAAGTGATGCCATCTGAAC
GTCCAAATCACATTTTAATGGAAACCTGGAATCCATTAGGTTTAGTTGGTATCATTACTG
CTTTCAATTTCCCATGTGCCGT----------TCTCTCATCTTCCCNCTTCNCAAACAAT
CAAAAGAATATCTTCAAATGGCTTGGACCTACCGGATCTGACTGTGGTATAGTTAACGTA
AATGTAGCTACAAACGGTGCTGAAATTGGTGGTGCCTTTGGAGGTGAAAAAGAGCACCGG
AGGTGGTAGAGAATCTGGCTCAGACAGCTGGAAACAGTATTGCCGNCNNAGTACTAATAC
AATC
Length of connected seq. 774
Full length Seq ID -
Full length Seq. -
Length of full length seq. -