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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFH564
Library SF
(Link to library)
Clone ID SFH564
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U10800-1
Original site URL
Representative seq. ID SFH564F
(Link to Original site)
Representative DNA sequence 
>SFH564 (SFH564Q) /CSM/SF/SFH5-C/SFH564Q.Seq.d/
CTGTTGGCCTACTGGTTCATGAAGGCCATAGTTTTAATTATTTTTATTTTATTAATCAAT
AATCAAATTGTAAAAACTTGGGATCAAAATGATGTTAAACAATTTTTTAACAATTATCCA
TTTGGTATTAAATCTAGTAGTGGATTTTATTATGATACTCAAGTTTCAACACTGAATGGA
ACAATTTATGGATTTACAAAGNAATGGATTTGTTGATTTTCCAGAGAATCCAGGATTTGA
AGAGTCAGGATTTTATTTAGACCAATCAGTTGATATGGTTGAAGATAGATTGGGAGCAGA
TGGTAGACCAGTTTATAAAAATGGTAATGAACCATTCATTGTTACAAATAAGGAAACTGG
TAAACAATTTACATTGGCACATAATTCATCAACATTTTATGATTGXXXXXXXXXX
sequence update 2001. 6. 1
Translated Amino Acid sequence 
cwptgs*rp*f*lflfy*siikl*klgikmmlnnfltiihlvlnlvvdfimilkfqh*ME
QFMDLQXNGFVDFPENPGFEESGFYLDQSVDMVEDRLGADGRPVYKNGNEPFIVTNKETG
KQFTLAHNSSTFYD---
Translated Amino Acid sequence (All Frames) 
Frame A:
llaywfmkaivliifillinnqivktwdqndvkqffnnypfgiksssgfyydtqvstlng
tiygftkxwic*fsresri*rvrilfrpis*yg*r*igsrw*tsl*kw**tihcyk*gnw
*tiyigt*finil*---


Frame B:
cwptgs*rp*f*lflfy*siikl*klgikmmlnnfltiihlvlnlvvdfimilkfqh*ME
QFMDLQXNGFVDFPENPGFEESGFYLDQSVDMVEDRLGADGRPVYKNGNEPFIVTNKETG
KQFTLAHNSSTFYD---


Frame C:
vgllvheghsfnyfyfinq*sncknlgsk*c*tif*qlsiwy*i**will*yssfntewn
nlwiykxmdllifqriqdlksqdfi*tnqliwlkidweqmvdqfikmvmnhsllqirklv
nnlhwhiihqhfmi---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFH564 (SFH564Q) /CSM/SF/SFH5-C/SFH564Q.Seq.d/                        797   0.0
CHB266 (CHB266Q) /CSM/CH/CHB2-C/CHB266Q.Seq.d/                        757   0.0
CFF495 (CFF495Q) /CSM/CF/CFF4-D/CFF495Q.Seq.d/                        757   0.0
CFD807 (CFD807Q) /CSM/CF/CFD8-A/CFD807Q.Seq.d/                        757   0.0
CFC284 (CFC284Q) /CSM/CF/CFC2-D/CFC284Q.Seq.d/                        757   0.0
AFJ225 (AFJ225Q) /CSM/AF/AFJ2-B/AFJ225Q.Seq.d/                        757   0.0
AFD372 (AFD372Q) /CSM/AF/AFD3-C/AFD372Q.Seq.d/                        757   0.0
CHB588 (CHB588Q) /CSM/CH/CHB5-D/CHB588Q.Seq.d/                        751   0.0
CFA195 (CFA195Q) /CSM/CF/CFA1-D/CFA195Q.Seq.d/                        751   0.0
CFI476 (CFI476Q) /CSM/CF/CFI4-D/CFI476Q.Seq.d/                        745   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF318287|AF318287.1 Dictyostelium discoideum putative calmodulin-binding protein CamBP64 mRNA, complete cds.   402   0.0    2
AC115592|AC115592.2 Dictyostelium discoideum chromosome 2 map 1-125959 strain AX4, complete sequence.    34   2e-06  10
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    36   2e-05  13
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence.    36   3e-04  12
AC117076|AC117076.2 Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence.    38   3e-04  8
AC123513|AC123513.1 Dictyostelium discoideum chromosome 2 map 2779865-2840915 strain AX4, *** SEQUENCING IN PROGRESS ***, in ordered pieces.    38   5e-04  6
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    44   5e-04  9
AC116550|AC116550.2 Dictyostelium discoideum chromosome 2 map 375056-387392 strain AX4, complete sequence.    40   5e-04  3
AP004171|AP004171.1 Mycoplasma penetrans genomic DNA, complete sequence, section 2/5.    32   0.001  14
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    32   0.002  12
dna update 2003.12.31
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM746676_9122(AM746676|pid:none) Sorangium cellulosum 'So ce 56'...    37   0.27
(Q54FD8) RecName: Full=Protein psiD; Flags: Precursor;                 35   0.78
(Q54C31) RecName: Full=Protein psiR; Flags: Precursor;                 34   1.3
AP006852_21(AP006852|pid:none) Candida albicans genomic DNA, chr...    33   3.9
CP000514_3654(CP000514|pid:none) Marinobacter aquaeolei VT8, com...    32   5.1
CP000158_2942(CP000158|pid:none) Hyphomonas neptunium ATCC 15444...    32   8.6
AY458642_39(AY458642|pid:none) Uncultured marine bacterium 560 c...    32   8.7
protein update 2009. 1.11
PSORT 

 psg: 0.75  gvh: 0.32  alm: 0.62  top: 0.53  tms: 0.00  mit: 0.25  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 28.0 %: nuclear
	 16.0 %: cytoskeletal
	 16.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for SFH564 is cyt
5' end seq. ID SFH564F
5' end seq. 
>SFH564F.Seq
CTGTTGGCCTACTGGTTCATGAAGGCCATAGTTTTAATTATTTTTATTTTATTAATCAAT
AATCAAATTGTAAAAACTTGGGATCAAAATGATGTTAAACAATTTTTTAACAATTATCCA
TTTGGTATTAAATCTAGTAGTGGATTTTATTATGATACTCAAGTTTCAACACTGAATGGA
ACAATTTATGGATTTACAAAGNAATGGATTTGTTGATTTTCCAGAGAATCCAGGATTTGA
AGAGTCAGGATTTTATTTAGACCAATCAGTTGATATGGTTGAAGATAGATTGGGAGCAGA
TGGTAGACCAGTTTATAAAAATGGTAATGAACCATTCATTGTTACAAATAAGGAAACTGG
TAAACAATTTACATTGGCACATAATTCATCAACATTTTATGATTG----------
Length of 5' end seq. 405
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -