SFH493
Library SF
(Link to library)
Clone ID SFH493
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16054-1
Original site URL
Representative seq. ID SFH493P
(Link to Original site)
Representative DNA sequence
>SFH493 (SFH493Q) /CSM/SF/SFH4-D/SFH493Q.Seq.d/
TTAGCATTAAAGAAAACTGAAATTAAAACTAAACCATTAGCTAACCATACTTTCTTTGAT
GTCTTTTCATTCCGTGTTTCAGCAGCAACAAGTGAATTAGAAATTGAAGCATGGAAAAAG
AATTTCTTATTTAAAGATAAGATGACAGGTTCTTTAACTATTCCAATTAATGATTTATTA
CATGCTAATGGTGAAGCTAAATGGTACCCATTATCAAATAAGAAACCAAGAAGTTCAAGA
GTAAAGAAAGAGAATATTACCAATAGTAACAATAAAGATAATAATACTGCATCACCAAGT
TCACCAGATGAAGCACAAGAAAAAGGTGACGAAGATCAACATCATTCAGCAGATGAAAGC
CCAGCCGAAGAAACCTCACCAACTACAGGTAGACCACGTTCAGTTTCTATGCCAGCACAG
AAGGTTAAAGCAGCACCAGAGATTTGTTTAGAGATTAAATTCGTTTTGAATGAACCACCA
AAGGAAGTACTCAAAGGTATCGTATTGGATGGTGTATGGAACTCTGAAAACAATTTCGGT
AGCTTAATCAATAATCCACATTGGATCAAATGCACTCAATATCTTTTAAGCATCAAAGAT
GAAATTACACCXXXXXXXXXXCTCTTTCACCTTGACAAAGAAATCTAGAGCTTGTGTATT
ACTCAGTCAAGATGATAATGATAAGAGTGTTGGTTTTTATGTTATCAAACAATTGGATGC
TGGTAAACGTGCTATCGAATTCAGAGAACAAGTCGGTAAAACTGAATCCTTCAAATTCTC
TTGTTCCACTGGTTGCACTTTAACCCTCGACGAAGGTACATACATTGTCATTCCATCAAC
TTATGATCATGGTATCGAAGGTGCTTTCCATTTAACACTTTTCACCGATGATAAGAATGC
CACCTTCCAACCATTAACAAACGCTTTCCAAGAGGTTGAACAAGTTAAAGGTACTTGGGT
TGGTAAATCTGCTGGTGGTTCTCCAAATCAACCAACTTTCTTCAATAATCCACAATTCCA
TTTGAAAGTACCTGCCTCTGATAAAGATGAAGTCATCGCCGTTCAATTGATTCAAGATTC
AACCATTGCCGATGAAGGTATTGGTTTCATTGTTTTATCTCGTGATTCTCATTCTGAACC
ATTGACTGCTCAAGATTTCCAAAATGAAATGGTTTTCACTAAAACTTCAAATTGGGAAAA
GAGAAATGATATCGTTTGTCGTCTTCATGTTAAACCAGAATCACCAAGAGAATTCACTAT
CATTCCTTCAACTTTTGATCCAAGTGTTAATCGTTCATTCAAACTTCAAGTTTATTCNAT
GTTTCAATTTCATTAGANAAATNAACAAAAAGANAATCCTC
sequence update 2001. 6. 1
Translated Amino Acid sequence
LALKKTEIKTKPLANHTFFDVFSFRVSAATSELEIEAWKKNFLFKDKMTGSLTIPINDLL
HANGEAKWYPLSNKKPRSSRVKKENITNSNNKDNNTASPSSPDEAQEKGDEDQHHSADES
PAEETSPTTGRPRSVSMPAQKVKAAPEICLEIKFVLNEPPKEVLKGIVLDGVWNSENNFG
SLINNPHWIKCTQYLLSIKDEIT---

---SFTLTKKSRACVLLSQDDNDKSVGFYVIKQLDAGKRAIEFREQVGKTESFKFSCSTG
CTLTLDEGTYIVIPSTYDHGIEGAFHLTLFTDDKNATFQPLTNAFQEVEQVKGTWVGKSA
GGSPNQPTFFNNPQFHLKVPASDKDEVIAVQLIQDSTIADEGIGFIVLSRDSHSEPLTAQ
DFQNEMVFTKTSNWEKRNDIVCRLHVKPESPREFTIIPSTFDPSVNRSFKLQVYSMFQFH
*xnxqkxnp


Translated Amino Acid sequence (All Frames)
Frame A:
LALKKTEIKTKPLANHTFFDVFSFRVSAATSELEIEAWKKNFLFKDKMTGSLTIPINDLL
HANGEAKWYPLSNKKPRSSRVKKENITNSNNKDNNTASPSSPDEAQEKGDEDQHHSADES
PAEETSPTTGRPRSVSMPAQKVKAAPEICLEIKFVLNEPPKEVLKGIVLDGVWNSENNFG
SLINNPHWIKCTQYLLSIKDEIT---

---lfhldkei*slcitqsr****ecwflcyqtigcw*tcyriqrtsr*n*ilqillfhw
lhfnprrryihchsinl*swyrrcfpfntfhr**echlptinkrfprg*ts*rylgw*ic
wwfskstnflq*stipfestcl**r*shrrsidsrfnhcr*rywfhcfis*fsf*tidcs
rfpk*ngfh*nfklgkek*yrlsssc*tritkrihyhsfnf*skc*sfiqtsslfxvsis
lxkxtkrxs

Frame B:
*h*rklklklnh*ltilslmsfhsvfqqqqvn*klkhgkrisylkir*qvl*lfqlmiyy
mlmvklngthyqirnqevqe*rkrilpivtikiiilhhqvhqmkhkkkvtkiniiqqmka
qpkkphqlqvdhvqflcqhrrlkqhqrfv*rlnsf*mnhqrkyskvsywmvygtlktisv
a*siihigsnalnif*askmklh---

---SFTLTKKSRACVLLSQDDNDKSVGFYVIKQLDAGKRAIEFREQVGKTESFKFSCSTG
CTLTLDEGTYIVIPSTYDHGIEGAFHLTLFTDDKNATFQPLTNAFQEVEQVKGTWVGKSA
GGSPNQPTFFNNPQFHLKVPASDKDEVIAVQLIQDSTIADEGIGFIVLSRDSHSEPLTAQ
DFQNEMVFTKTSNWEKRNDIVCRLHVKPESPREFTIIPSTFDPSVNRSFKLQVYSMFQFH
*xnxqkxnp

Frame C:
siken*n*n*tis*pyfl*clfipcfssnk*irn*smekefli*r*ddrffnysn**fit
c*w*s*mvpiik*etkkfkskereyyq**q*r**ycitkftr*strkr*rrstsfsr*kp
srrnltnyr*ttfsfyasteg*sstrdlfrd*irfe*ttkgstqryrigwcmel*kqfr*
lnq*stldqmhsisfkhqr*nyt---

---lsp*qrnlelvyysvkmimirvlvfmlsnnwmlvnvlsnsenksvklnpsnslvplv
al*pstkvhtlsfhqlmimvskvlsi*hfspmirmppsnh*qtlskrlnklkvlglvnll
vvlqinqlssiihnsi*kylplikmksspfn*fkiqplpmkvlvslfylvililnh*llk
iskmkwfslklqigkremisfvvfmlnqnhqenslsflqlliqvlivhsnfkfixcfnfi
rxxnkkxil

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SFH493 (SFH493Q) /CSM/SF/SFH4-D/SFH493Q.Seq.d/ 2615 0.0
VHL339 (VHL339Q) /CSM/VH/VHL3-B/VHL339Q.Seq.d/ 1368 0.0
VFL249 (VFL249Q) /CSM/VF/VFL2-C/VFL249Q.Seq.d/ 1239 0.0
SLC787 (SLC787Q) /CSM/SL/SLC7-D/SLC787Q.Seq.d/ 1213 0.0
SSC516 (SSC516Q) /CSM/SS/SSC5-A/SSC516Q.Seq.d/ 1110 0.0
SLC473 (SLC473Q) /CSM/SL/SLC4-D/SLC473Q.Seq.d/ 1096 0.0
SLF205 (SLF205Q) /CSM/SL/SLF2-A/SLF205Q.Seq.d/ 1025 0.0
SFE724 (SFE724Q) /CSM/SF/SFE7-A/SFE724Q.Seq.d/ 817 0.0
CHO709 (CHO709Q) /CSM/CH/CHO7-A/CHO709Q.Seq.d/ 642 0.0
SFD653 (SFD653Q) /CSM/SF/SFD6-C/SFD653Q.Seq.d/ 581 e-164

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AF525418|AF525418.1 Dictyostelium discoideum calpain-like cysteine protease (cplA) mRNA, complete cds. 1380 0.0 2
AP006628|AP006628.1 Onion yellows phytoplasma DNA, complete genome. 36 0.029 16
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 34 0.030 16
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence. 34 0.035 15
AC123147|AC123147.4 Rattus norvegicus clone CH230-333E19, *** SEQUENCING IN PROGRESS ***, 1 ordered piece. 40 0.066 6
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence. 32 0.12 12
AC121422|AC121422.4 Rattus norvegicus clone CH230-115B8, WORKING DRAFT SEQUENCE, 2 unordered pieces. 40 0.16 6
AC113371|AC113371.1 Homo sapiens chromosome 5 clone RP11-143H23, WORKING DRAFT SEQUENCE, 1 unordered pieces. 32 0.18 7
AC139150|AC139150.1 Homo sapiens chromosome 17 clone RP11-498C9 map 17, LOW-PASS SEQUENCE SAMPLING. 38 0.21 5
BQ667603|BQ667603.1 pb55h10.y1 Anc caninum L3 serum stim pAMP1 v1 Chiapelli McCarter Ancylostoma caninum cDNA 5' similar to TR:O18000 O18000 R11H6.1 PROTEIN. [1] ;contains Alu repetitive element;, mRNA sequence. 44 0.29 2
dna update 2003.12.30
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AL954831_9(AL954831|pid:none) Zebrafish DNA sequence from clone ... 54 1e-05
BC091999_1(BC091999|pid:none) Danio rerio CAPN1 protein, mRNA (c... 52 4e-05
BC077421_1(BC077421|pid:none) Xenopus laevis cDNA clone MGC:8218... 52 4e-05
AY639153_1(AY639153|pid:none) Gecarcinus lateralis calpain B (Ca... 52 6e-05
(P34308) RecName: Full=Calpain clp-1; EC=3.4.22.-; &L2... 51 1e-04
(Q4V8Q1) RecName: Full=Calpain 11; EC=3.4.22.-; AltName... 51 1e-04
BC169895_1(BC169895|pid:none) Xenopus laevis calpain, mRNA (cDNA... 50 2e-04
BC169897_1(BC169897|pid:none) Xenopus laevis calpain, mRNA (cDNA... 50 2e-04
AF212199_1(AF212199|pid:none) Xenopus laevis calpain (CL-2) mRNA... 49 5e-04
BT058958_1(BT058958|pid:none) Salmo salar clone ssal-rgf-516-040... 48 7e-04
protein update 2009. 5.25
PSORT

psg: 0.81 gvh: 0.53 alm: 0.44 top: 0.53 tms: 0.00 mit: 0.22 mip: 0.00
nuc: 0.03 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: cytoplasmic
24.0 %: nuclear
8.0 %: cytoskeletal
8.0 %: Golgi
8.0 %: mitochondrial
4.0 %: vesicles of secretory system
4.0 %: endoplasmic reticulum

>> prediction for SFH493 is cyt

5' end seq. ID SFH493F
5' end seq.
>SFH493F.Seq
TTAGCATTAAAGAAAACTGAAATTAAAACTAAACCATTAGCTAACCATACTTTCTTTGAT
GTCTTTTCATTCCGTGTTTCAGCAGCAACAAGTGAATTAGAAATTGAAGCATGGAAAAAG
AATTTCTTATTTAAAGATAAGATGACAGGTTCTTTAACTATTCCAATTAATGATTTATTA
CATGCTAATGGTGAAGCTAAATGGTACCCATTATCAAATAAGAAACCAAGAAGTTCAAGA
GTAAAGAAAGAGAATATTACCAATAGTAACAATAAAGATAATAATACTGCATCACCAAGT
TCACCAGATGAAGCACAAGAAAAAGGTGACGAAGATCAACATCATTCAGCAGATGAAAGC
CCAGCCGAAGAAACCTCACCAACTACAGGTAGACCACGTTCAGTTTCTATGCCAGCACAG
AAGGTTAAAGCAGCACCAGAGATTTGTTTAGAGATTAAATTCGTTTTGAATGAACCACCA
AAGGAAGTACTCAAAGGTATCGTATTGGATGGTGTATGGAACTCTGAAAACAATTTCGGT
AGCTTAATCAATAATCCACATTGGATCAAATGCACTCAATATCTTTTAAGCATCAAAGAT
GAAATTACACC----------
Length of 5' end seq. 611
3' end seq. ID SFH493Z
3' end seq.
>SFH493Z.Seq
----------CTCTTTCACCTTGACAAAGAAATCTAGAGCTTGTGTATTACTCAGTCAAG
ATGATAATGATAAGAGTGTTGGTTTTTATGTTATCAAACAATTGGATGCTGGTAAACGTG
CTATCGAATTCAGAGAACAAGTCGGTAAAACTGAATCCTTCAAATTCTCTTGTTCCACTG
GTTGCACTTTAACCCTCGACGAAGGTACATACATTGTCATTCCATCAACTTATGATCATG
GTATCGAAGGTGCTTTCCATTTAACACTTTTCACCGATGATAAGAATGCCACCTTCCAAC
CATTAACAAACGCTTTCCAAGAGGTTGAACAAGTTAAAGGTACTTGGGTTGGTAAATCTG
CTGGTGGTTCTCCAAATCAACCAACTTTCTTCAATAATCCACAATTCCATTTGAAAGTAC
CTGCCTCTGATAAAGATGAAGTCATCGCCGTTCAATTGATTCAAGATTCAACCATTGCCG
ATGAAGGTATTGGTTTCATTGTTTTATCTCGTGATTCTCATTCTGAACCATTGACTGCTC
AAGATTTCCAAAATGAAATGGTTTTCACTAAAACTTCAAATTGGGAAAAGAGAAATGATA
TCGTTTGTCGTCTTCATGTTAAACCAGAATCACCAAGAGAATTCACTATCATTCCTTCAA
CTTTTGATCCAAGTGTTAATCGTTCATTCAAACTTCAAGTTTATTCNATGTTTCAATTTC
ATTAGANAAATNAACAAAAAGANAATCCTC
Length of 3' end seq. 740
Connected seq. ID SFH493P
Connected seq.
>SFH493P.Seq
TTAGCATTAAAGAAAACTGAAATTAAAACTAAACCATTAGCTAACCATACTTTCTTTGAT
GTCTTTTCATTCCGTGTTTCAGCAGCAACAAGTGAATTAGAAATTGAAGCATGGAAAAAG
AATTTCTTATTTAAAGATAAGATGACAGGTTCTTTAACTATTCCAATTAATGATTTATTA
CATGCTAATGGTGAAGCTAAATGGTACCCATTATCAAATAAGAAACCAAGAAGTTCAAGA
GTAAAGAAAGAGAATATTACCAATAGTAACAATAAAGATAATAATACTGCATCACCAAGT
TCACCAGATGAAGCACAAGAAAAAGGTGACGAAGATCAACATCATTCAGCAGATGAAAGC
CCAGCCGAAGAAACCTCACCAACTACAGGTAGACCACGTTCAGTTTCTATGCCAGCACAG
AAGGTTAAAGCAGCACCAGAGATTTGTTTAGAGATTAAATTCGTTTTGAATGAACCACCA
AAGGAAGTACTCAAAGGTATCGTATTGGATGGTGTATGGAACTCTGAAAACAATTTCGGT
AGCTTAATCAATAATCCACATTGGATCAAATGCACTCAATATCTTTTAAGCATCAAAGAT
GAAATTACACC----------CTCTTTCACCTTGACAAAGAAATCTAGAGCTTGTGTATT
ACTCAGTCAAGATGATAATGATAAGAGTGTTGGTTTTTATGTTATCAAACAATTGGATGC
TGGTAAACGTGCTATCGAATTCAGAGAACAAGTCGGTAAAACTGAATCCTTCAAATTCTC
TTGTTCCACTGGTTGCACTTTAACCCTCGACGAAGGTACATACATTGTCATTCCATCAAC
TTATGATCATGGTATCGAAGGTGCTTTCCATTTAACACTTTTCACCGATGATAAGAATGC
CACCTTCCAACCATTAACAAACGCTTTCCAAGAGGTTGAACAAGTTAAAGGTACTTGGGT
TGGTAAATCTGCTGGTGGTTCTCCAAATCAACCAACTTTCTTCAATAATCCACAATTCCA
TTTGAAAGTACCTGCCTCTGATAAAGATGAAGTCATCGCCGTTCAATTGATTCAAGATTC
AACCATTGCCGATGAAGGTATTGGTTTCATTGTTTTATCTCGTGATTCTCATTCTGAACC
ATTGACTGCTCAAGATTTCCAAAATGAAATGGTTTTCACTAAAACTTCAAATTGGGAAAA
GAGAAATGATATCGTTTGTCGTCTTCATGTTAAACCAGAATCACCAAGAGAATTCACTAT
CATTCCTTCAACTTTTGATCCAAGTGTTAATCGTTCATTCAAACTTCAAGTTTATTCNAT
GTTTCAATTTCATTAGANAAATNAACAAAAAGANAATCCTC
Length of connected seq. 1351
Full length Seq ID -
Full length Seq. -
Length of full length seq. -