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Dicty_cDB
Contig List | Clone List | cDNA Library List
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Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFI379
Library AF
(Link to library)
Clone ID AFI379
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U08795-1
Original site URL
Representative seq. ID AFI379P
(Link to Original site)
Representative DNA sequence 
>AFI379 (AFI379Q) /CSM/AF/AFI3-D/AFI379Q.Seq.d/
CACTGTTGGCCTACTGGATATATTTATTTTTAAATCAAAAATAATTTGTTTAAATAACCA
ATAATTATTTTTTTTATTTTTTAAAAATATTTTGTTATTATTATTTTTATTATCACAAGA
TGGCTTTAGTTTTACCAATTTTTGCAACTGAAAATACTTTATTGGTTACCGAGAATGATT
TAGGAAGAGGTTTTAGTGTTGACGATAATGGAGCAAATGCTAAAAAGAGCAATGTTTATA
TTTGCACTAAAGAAGATATGACAACAGTAAGATCAATAACAGACTCAAATAAACTCACAT
TAATTAATGATCAAGAATCATTAACTTCTGCATTAAATGTTAGTGGTGAATTAAGTTTAT
CATATGGTCTTATGTCAGGAAAAATTATGGGTGAATATTTAGATACCAGTTCATCAAATT
CTAATAAATTAACATTCTTATTTACAAGAAGAAAGGTAACAAAAATTGTTGAACTTAAAT
CTACTGCCAAAACTACAAAAGAGTTACAAGCAATTAATAATATTGATTCCCTTAAATCTA
TTTATGGTCTTTTTTATATTAGTAAAATTGAATATGGTGCAATTTTAGATTTAAAAATTA
CTATTGAATCATCTGATTCAAAAACTATGAATGAATTAAAAGGTGXXXXXXXXXXCAATT
AATGTTACTTCATCAGTTAGTATGAGTGGATGTAAAGATTTAAAGAAAGTTCATATTCAA
ACTTTAGATGAAGCCAATCAATTAATTGGAGCATTTGAAGTTGATGAAGAAGCATTAGTA
CCAGTTAAGAATGGAAATTTCTCAAATTGCAGCCAAATTTAACACCCTCACTTACAATTG
ATCCAATTCAATTCAATCATTATAAGAAGAAATTATCAGATGTTGGTAAAACTTATTTAG
AATATCAACAAATGATTTTACAATTGGATGTTTTTAAACAATTAATTCAACCAATGTTAG
AAGATGATGATAATGCTGAATACATTGAAGATTTACATCCAAAAGTTGTTGAATTTATTT
CATTACTTAAATCATCACAAGATAAACTTATTGGTTTTATGCAAGGTTCAATGAATAATA
TTTTAACAAATGAAATTCCAGTTACTGATGCAGATGCAGAATCTAAAAAATCAATTGCAA
AACAAATGATTGGTTCATCATTTACAAAGACTGATAGTGGTANATGGAAAGGTCCAACTG
TTGGTGGAATTCCAACATATAAAGGAACATATAAATACATTGATGGCTCAGAATATGAAG
GNTTATGTTTAAAAGGTNAACGTCATGGTAATGGCNAAATGACTTATTATGATGGCAACC
CAGATGATTTTAAATCAATTGAAGGCNNTTGGAAAAACGATGAAGTTAATTTCCCTTCNN
CAGTTACTTATTCAAATGAAAAACCAGTTGTGACTATTACAGGTGCNAAAGATTTAGCTA
AATGGAATGAAACCCTTAAAAAGAATGTNACTCAATNAAAA
sequence update 2003. 5. 2
Translated Amino Acid sequence 
llaywiylflnqk*fv*ITNNYFFYFLKIFCYYYFYYHKMALVLPIFATENTLLVTENDL
GRGFSVDDNGANAKKSNVYICTKEDMTTVRSITDSNKLTLINDQESLTSALNVSGELSLS
YGLMSGKIMGEYLDTSSSNSNKLTFLFTRRKVTKIVELKSTAKTTKELQAINNIDSLKSI
YGLFYISKIEYGAILDLKITIESSDSKTMNELKG---

---INVTSSVSMSGCKDLKKVHIQTLDEANQLIGAFEVDEEALVPVKNGNFSNCSQI*hp
hlqliqfnsiiirrnyqmlvkli*nink*fynwmflnn*fnqc*kmmimlntlkiyiqkl
lnlfhylnhhkinllvlckvq*iif*qmkfqllmqmqnlknqlqnk*lvhhlqrlivvxg
kvqllvefqhikehintlmaqnmkxyv*kvnvmvmak*limmatqmilnqlkaxgktmkl
islxqlliqmknql*llqvxki*lngmkplkrmxlnx
Translated Amino Acid sequence (All Frames) 
Frame A:
hcwptgyiyf*iknnlfk*piiiffif*kyfviiifiitrwl*fyqflqlkilywlprmi
*eevlvltimeqmlkramfifalkki*qq*dq*qtqinsh*lmiknh*llh*mlvvn*vy
hmvlcqeklwvni*ipvhqilin*hsylqeer*qkllnlnllpklqksykqliiliplnl
fmvffilvklnmvqf*i*klllnhliqkl*mn*kv---

---qlmllhqlv*vdvki*rkfifkl*mkpin*lehlklmkkh*yqlrmeisqiaakfnt
ltyn*snsiqsl*eeiircw*nlfristndftigcf*tinstnvrr***c*ih*rftsks
c*iyfit*iitr*tywfyarfne*yfnk*nssy*crcri*kincktndwfiiykd**wxm
ersncwwnsni*rni*ih*wlri*rxmfkrxtsw*wxndll*wqpr*f*in*rxlekr*s
*fpfxsylfk*ktscdyyrcxrfs*me*np*kecxsxk

Frame B:
tvglldififkskiiclnnq*lfflffknillllfllsqdgfsftnfcn*kyfigyre*f
rkrf*c*r*wskc*keqclylh*rrydnskinnrlk*thin**sriinfcikc*w*ikfi
iwsyvrknyg*ifryqfikf**iniliykkkgnknc*t*iycqnykrvtsn**y*fp*iy
lwsfly**n*iwcnfrfknyy*ii*fknye*ikr---

---n*cyfis*yewm*rfkessysnfr*sqsinwsi*s**rsists*ewkflklqpnltp
sltidpiqfnhykkklsdvgktyleyqqmilqldvfkqliqpmledddnaeyiedlhpkv
vefisllkssqdkligfmqgsmnniltneipvtdadaeskksiakqmigssftktdsgxw
kgptvggiptykgtykyidgseyeglclkgxrhgngxmtyydgnpddfksiegxwkndev
nfpsxvtysnekpvvtitgakdlakwnetlkknvtqxk

Frame C:
llaywiylflnqk*fv*ITNNYFFYFLKIFCYYYFYYHKMALVLPIFATENTLLVTENDL
GRGFSVDDNGANAKKSNVYICTKEDMTTVRSITDSNKLTLINDQESLTSALNVSGELSLS
YGLMSGKIMGEYLDTSSSNSNKLTFLFTRRKVTKIVELKSTAKTTKELQAINNIDSLKSI
YGLFYISKIEYGAILDLKITIESSDSKTMNELKG---

---INVTSSVSMSGCKDLKKVHIQTLDEANQLIGAFEVDEEALVPVKNGNFSNCSQI*hp
hlqliqfnsiiirrnyqmlvkli*nink*fynwmflnn*fnqc*kmmimlntlkiyiqkl
lnlfhylnhhkinllvlckvq*iif*qmkfqllmqmqnlknqlqnk*lvhhlqrlivvxg
kvqllvefqhikehintlmaqnmkxyv*kvnvmvmak*limmatqmilnqlkaxgktmkl
islxqlliqmknql*llqvxki*lngmkplkrmxlnx
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFI379 (AFI379Q) /CSM/AF/AFI3-D/AFI379Q.Seq.d/                       2587   0.0
VFM148 (VFM148Q) /CSM/VF/VFM1-B/VFM148Q.Seq.d/                       1229   0.0
VFL783 (VFL783Q) /CSM/VF/VFL7-D/VFL783Q.Seq.d/                       1219   0.0
VFM532 (VFM532Q) /CSM/VF/VFM5-B/VFM532Q.Seq.d/                       1110   0.0
VFH858 (VFH858Q) /CSM/VF/VFH8-C/VFH858Q.Seq.d/                       1074   0.0
VFF188 (VFF188Q) /CSM/VF/VFF1-D/VFF188Q.Seq.d/                       1059   0.0
VFL583 (VFL583Q) /CSM/VF/VFL5-D/VFL583Q.Seq.d/                        188   2e-46
VHE669 (VHE669Q) /CSM/VH/VHE6-C/VHE669Q.Seq.d/                        101   3e-20
CHD263 (CHD263Q) /CSM/CH/CHD2-C/CHD263Q.Seq.d/                         54   6e-06
SHE837 (SHE837Q) /CSM/SH/SHE8-B/SHE837Q.Seq.d/                         52   2e-05
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AP004170|AP004170.1 Mycoplasma penetrans genomic DNA, complete sequence, section 1/5.    34   2e-10  26
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    36   2e-10  27
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence.    34   4e-10  18
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    36   2e-08  23
AP004172|AP004172.1 Mycoplasma penetrans genomic DNA, complete sequence, section 3/5.    40   3e-08  20
AC117072|AC117072.3 Dictyostelium discoideum chromosome 2 map 3879572-4071762 strain AX4, complete sequence.    38   5e-08  18
AP004827|AP004827.1 Staphylococcus aureus subsp. aureus MW2 DNA, complete genome, strain:MW2, section 6/10.    34   5e-08  22
AC116551|AC116551.2 Dictyostelium discoideum chromosome 2 map complement(581327-427576) strain AX4, complete sequence.    44   6e-08  17
AP003134|AP003134.2 Staphylococcus aureus subsp. aureus N315 genomic DNA, complete genome, section 6/10.    34   6e-08  21
BX842644|BX842644.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete  sequence; segment 3/4.    34   4e-07  26
dna update 2004. 5.14
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014185_303(AE014185|pid:none) Plasmodium falciparum 3D7 chromo...    58   1e-06
AM910988_157(AM910988|pid:none) Plasmodium knowlesi strain H chr...    53   2e-05
AE010300_3738(AE010300|pid:none) Leptospira interrogans serovar ...    49   6e-04
AE016823_473(AE016823|pid:none) Leptospira interrogans serovar C...    49   6e-04
CP000139_3222(CP000139|pid:none) Bacteroides vulgatus ATCC 8482,...    47   0.001
AP007151_440(AP007151|pid:none) Aspergillus oryzae RIB40 genomic...    47   0.002
AC159429_39(AC159429|pid:none) Trypanosoma brucei chromosome 7 c...    47   0.002
CP000489_849(CP000489|pid:none) Paracoccus denitrificans PD1222 ...    46   0.003
BX538351_69(BX538351|pid:none) Cryptosporidium parvum chromosome...    46   0.003
CT005267_354(CT005267|pid:none) Leishmania major strain Friedlin...    45   0.008
protein update 2009. 3.28
PSORT 

 psg: 0.86  gvh: 0.41  alm: 0.37  top: 0.63  tms: 0.00  mit: 0.31  mip: 0.08
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: nuclear
	 32.0 %: cytoplasmic
	 20.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane
	  4.0 %: endoplasmic reticulum

>> prediction for AFI379 is nuc
5' end seq. ID AFI379F
5' end seq. 
>AFI379F.Seq
CACTGTTGGCCTACTGGATATATTTATTTTTAAATCAAAAATAATTTGTTTAAATAACCA
ATAATTATTTTTTTTATTTTTTAAAAATATTTTGTTATTATTATTTTTATTATCACAAGA
TGGCTTTAGTTTTACCAATTTTTGCAACTGAAAATACTTTATTGGTTACCGAGAATGATT
TAGGAAGAGGTTTTAGTGTTGACGATAATGGAGCAAATGCTAAAAAGAGCAATGTTTATA
TTTGCACTAAAGAAGATATGACAACAGTAAGATCAATAACAGACTCAAATAAACTCACAT
TAATTAATGATCAAGAATCATTAACTTCTGCATTAAATGTTAGTGGTGAATTAAGTTTAT
CATATGGTCTTATGTCAGGAAAAATTATGGGTGAATATTTAGATACCAGTTCATCAAATT
CTAATAAATTAACATTCTTATTTACAAGAAGAAAGGTAACAAAAATTGTTGAACTTAAAT
CTACTGCCAAAACTACAAAAGAGTTACAAGCAATTAATAATATTGATTCCCTTAAATCTA
TTTATGGTCTTTTTTATATTAGTAAAATTGAATATGGTGCAATTTTAGATTTAAAAATTA
CTATTGAATCATCTGATTCAAAAACTATGAATGAATTAAAAGGTG----------
Length of 5' end seq. 645
3' end seq. ID AFI379Z
3' end seq. 
>AFI379Z.Seq
NNNNNNNNNNCAATTAATGTTACTTCATCAGTTAGTATGAGTGGATGTAAAGATTTAAAG
AAAGTTCATATTCAAACTTTAGATGAAGCCAATCAATTAATTGGAGCATTTGAAGTTGAT
GAAGAAGCATTAGTACCAGTTAAGAATGGAAATTTCTCAAATTGCAGCCAAATTTAACAC
CCTCACTTACAATTGATCCAATTCAATTCAATCATTATAAGAAGAAATTATCAGATGTTG
GTAAAACTTATTTAGAATATCAACAAATGATTTTACAATTGGATGTTTTTAAACAATTAA
TTCAACCAATGTTAGAAGATGATGATAATGCTGAATACATTGAAGATTTACATCCAAAAG
TTGTTGAATTTATTTCATTACTTAAATCATCACAAGATAAACTTATTGGTTTTATGCAAG
GTTCAATGAATAATATTTTAACAAATGAAATTCCAGTTACTGATGCAGATGCAGAATCTA
AAAAATCAATTGCAAAACAAATGATTGGTTCATCATTTACAAAGACTGATAGTGGTANAT
GGAAAGGTCCAACTGTTGGTGGAATTCCAACATATAAAGGAACATATAAATACATTGATG
GCTCAGAATATGAAGGNTTATGTTTAAAAGGTNAACGTCATGGTAATGGCNAAATGACTT
ATTATGATGGCAACCCAGATGATTTTAAATCAATTGAAGGCNNTTGGAAAAACGATGAAG
TTAATTTCCCTTCNNCAGTTACTTATTCAAATGAAAAACCAGTTGTGACTATTACAGGTG
CNAAAGATTTAGCTAAATGGAATGAAACCCTTAAAAAGAATGTNACTCAATNAAAA
Length of 3' end seq. 836
Connected seq. ID AFI379P
Connected seq. 
>AFI379P.Seq
CACTGTTGGCCTACTGGATATATTTATTTTTAAATCAAAAATAATTTGTTTAAATAACCA
ATAATTATTTTTTTTATTTTTTAAAAATATTTTGTTATTATTATTTTTATTATCACAAGA
TGGCTTTAGTTTTACCAATTTTTGCAACTGAAAATACTTTATTGGTTACCGAGAATGATT
TAGGAAGAGGTTTTAGTGTTGACGATAATGGAGCAAATGCTAAAAAGAGCAATGTTTATA
TTTGCACTAAAGAAGATATGACAACAGTAAGATCAATAACAGACTCAAATAAACTCACAT
TAATTAATGATCAAGAATCATTAACTTCTGCATTAAATGTTAGTGGTGAATTAAGTTTAT
CATATGGTCTTATGTCAGGAAAAATTATGGGTGAATATTTAGATACCAGTTCATCAAATT
CTAATAAATTAACATTCTTATTTACAAGAAGAAAGGTAACAAAAATTGTTGAACTTAAAT
CTACTGCCAAAACTACAAAAGAGTTACAAGCAATTAATAATATTGATTCCCTTAAATCTA
TTTATGGTCTTTTTTATATTAGTAAAATTGAATATGGTGCAATTTTAGATTTAAAAATTA
CTATTGAATCATCTGATTCAAAAACTATGAATGAATTAAAAGGTG----------CAATT
AATGTTACTTCATCAGTTAGTATGAGTGGATGTAAAGATTTAAAGAAAGTTCATATTCAA
ACTTTAGATGAAGCCAATCAATTAATTGGAGCATTTGAAGTTGATGAAGAAGCATTAGTA
CCAGTTAAGAATGGAAATTTCTCAAATTGCAGCCAAATTTAACACCCTCACTTACAATTG
ATCCAATTCAATTCAATCATTATAAGAAGAAATTATCAGATGTTGGTAAAACTTATTTAG
AATATCAACAAATGATTTTACAATTGGATGTTTTTAAACAATTAATTCAACCAATGTTAG
AAGATGATGATAATGCTGAATACATTGAAGATTTACATCCAAAAGTTGTTGAATTTATTT
CATTACTTAAATCATCACAAGATAAACTTATTGGTTTTATGCAAGGTTCAATGAATAATA
TTTTAACAAATGAAATTCCAGTTACTGATGCAGATGCAGAATCTAAAAAATCAATTGCAA
AACAAATGATTGGTTCATCATTTACAAAGACTGATAGTGGTANATGGAAAGGTCCAACTG
TTGGTGGAATTCCAACATATAAAGGAACATATAAATACATTGATGGCTCAGAATATGAAG
GNTTATGTTTAAAAGGTNAACGTCATGGTAATGGCNAAATGACTTATTATGATGGCAACC
CAGATGATTTTAAATCAATTGAAGGCNNTTGGAAAAACGATGAAGTTAATTTCCCTTCNN
CAGTTACTTATTCAAATGAAAAACCAGTTGTGACTATTACAGGTGCNAAAGATTTAGCTA
AATGGAATGAAACCCTTAAAAAGAATGTNACTCAATNAAAA
Length of connected seq. 1471
Full length Seq ID -
Full length Seq. -
Length of full length seq. -