>SFH459 (SFH459Q) /CSM/SF/SFH4-C/SFH459Q.Seq.d/
ATTCACCAAAAACTATTGAAAATGTTTGAAAGAACATTGGTTGACCTCATCAGAGGTATT
AGAAACCATAAAAAGAATGAAACTAAATTTATAAATCAATGTATAAATGAAATTAAAGAA
GAATTAAAAGGTGATATGCAAAAAAAAACAGTTGCCGTCCAAAAATTAACATATATTCAA
ATGTTAGGATTTGATATTAGTTGGGCATCATTTAAAATTGTTGAAGTTATGAGTTGTAAT
AAATTTTCATCAAAAAGAATTGGATATTTAGCAGCATCACAAAGTTTTAATGAAGGAACA
GATGTTATTGTATTGGCAACTCATCAAATTAGAAAGGATTTCTTATCATCGAATCAAAGT
GAAGCCTATTTAGCATTGAATTGTCTTTCAAATATTTGTACAACCGATTTAGCAAGAGAG
TTGGCAAATGATATCCTAACATTATTGAGTACACAAAAAACACATATTTTAAAGAGAGCC
ATCACGGTGTTATATAAGATATTCTTGAGATATCCAGAATCGCTAAGACCAGCATTCCCA
AAGTTAAGAGAGAAATTGGATGATCCCGAGCCATCGGTTGTATCATGCTCAGTCAATGTG
ATTTGCXXXXXXXXXXCTTGTGCAAAAGCAAACGGTGACAAAATCCCATCATTAGACGAT
GATGATGAGGAAGAGGAAGCACAAGAAGAAGAGGACCAAAATGAAATCACTCATGAAATC
GTTCAAGAATGTCTTGAAATTATTAAATCACGTTTAACAATTTTCACTCATAGTATTTAC
CTAAATGTACAAGAACGTGCTTGTCTTATTAATGAATTATTATCATTCTACACAGTCACT
AAAGAACAAGGTAATAATATTTCAAAGGAGTTAATTTCATTGTTCACAGAACAATTGAAT
CCAGTTGGTCCAAAAGCTCAAAAGAAAGTACCAATTCCAGAAGGTTTAGATTTAGATGAA
TGGATTAATGATCCAAAACATCAAGAACCAATTGAAGAGGATGAAGATGATGATATTTTC
AATACAAGTACATCTAGTCATCAAAAGAAACATCACAAACATCACCGTGGAGGATATGAT
GGTGATGATGATGAAGATGATGAAACCAATAGTTCTCATTCAGGTCATTCAAGTAGTAAT
TTCAATCGTCATCCAATTGATATTCAAAGACAAAAGGAAGAAAGATTAAGAAAACAAGCT
AATAATCCATATATGTTGGGTGGTAAAGTATCAAAGAAATTATCAACCAATGATCCTGAA
AATATTCCAGTGGTTCAACTAACTGGTNATTTAGGTCATCTTCATGTTGGTGCATCATCA
AATAGACCAATGCCATCAAAAGGG

IHQKLLKMFERTLVDLIRGIRNHKKNETKFINQCINEIKEELKGDMQKKTVAVQKLTYIQ
MLGFDISWASFKIVEVMSCNKFSSKRIGYLAASQSFNEGTDVIVLATHQIRKDFLSSNQS
EAYLALNCLSNICTTDLARELANDILTLLSTQKTHILKRAITVLYKIFLRYPESLRPAFP
KLREKLDDPEPSVVSCSVNVIC---

---CAKANGDKIPSLDDDDEEEEAQEEEDQNEITHEIVQECLEIIKSRLTIFTHSIYLNV
QERACLINELLSFYTVTKEQGNNISKELISLFTEQLNPVGPKAQKKVPIPEGLDLDEWIN
DPKHQEPIEEDEDDDIFNTSTSSHQKKHHKHHRGGYDGDDDEDDETNSSHSGHSSSNFNR
HPIDIQRQKEERLRKQANNPYMLGGKVSKKLSTNDPENIPVVQLTGXLGHLHVGASSNRP
MPSKG

Frame A:
IHQKLLKMFERTLVDLIRGIRNHKKNETKFINQCINEIKEELKGDMQKKTVAVQKLTYIQ
MLGFDISWASFKIVEVMSCNKFSSKRIGYLAASQSFNEGTDVIVLATHQIRKDFLSSNQS
EAYLALNCLSNICTTDLARELANDILTLLSTQKTHILKRAITVLYKIFLRYPESLRPAFP
KLREKLDDPEPSVVSCSVNVIC---

---lvqkqtvtkshh*tmmmrkrkhkkkrtkmkslmksfknvlkllnhv*qfslivft*m
yknvlvllmnyyhstqslknkviifqrs*fhcsqnn*iqlvqklkrkyqfqkv*i*mngl
miqniknqlkrmkmmifsiqvhlvikrnitnitvedmmvmmmkmmkpivliqviqvvisi
viqlifkdkrkkd*enkliihicwvvkyqrnyqpmilkifqwfn*lvi*vifmlvhhqid
qchqk

Frame B:
ftkny*kclkehwltssevletikrmklnl*inv*mklkkn*kvickkkqlpskn*hifk
c*dlilvghhlkllkl*vvinfhqkeldi*qhhkvlmkeqmllywqliklerisyhrikv
kpi*h*ivfqifvqpi*qeswqmis*hy*vhkkhif*repsrcyirys*diqnr*dqhsq
s*ernwmipshrlyhaqsm*f---

---lckskr*qnpiirr***grgstrrrgpk*nhs*nrsrms*ny*itfnnfhs*ylpkc
trtclsy**iiiilhsh*rtr**yfkgvnfivhrtiesswsksskestnsrrfrfr*md*
*sktsrtn*rg*r**yfqykyi*ssketsqtspwri*w****r**nq*fsfrsfk**fqs
ssn*ysktkgrkikkts**siyvgw*sikeiinq*s*kyssgstnwxfrssscwciik*t
naikr

Frame C:
spktienv*knig*phqry*kp*ke*n*iyksmyk*n*rrikr*yakknscrpkiniysn
vri*y*lgii*nc*syel**ifikknwifssitkf**rnrcycignssn*kgfliiesk*
slfsielsfkylynrfskrvgk*ypniieytkntyfkeshhgvi*dileisriaktsipk
vkreig*sraigcimlsqcdl---

---CAKANGDKIPSLDDDDEEEEAQEEEDQNEITHEIVQECLEIIKSRLTIFTHSIYLNV
QERACLINELLSFYTVTKEQGNNISKELISLFTEQLNPVGPKAQKKVPIPEGLDLDEWIN
DPKHQEPIEEDEDDDIFNTSTSSHQKKHHKHHRGGYDGDDDEDDETNSSHSGHSSSNFNR
HPIDIQRQKEERLRKQANNPYMLGGKVSKKLSTNDPENIPVVQLTGXLGHLHVGASSNRP
MPSKG

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFH459 (SFH459Q) /CSM/SF/SFH4-C/SFH459Q.Seq.d/                       2012   0.0
VHO578 (VHO578Q) /CSM/VH/VHO5-D/VHO578Q.Seq.d/                       1148   0.0
SHH419 (SHH419Q) /CSM/SH/SHH4-A/SHH419Q.Seq.d/                       1148   0.0
SHB371 (SHB371Q) /CSM/SH/SHB3-C/SHB371Q.Seq.d/                       1148   0.0
CHE687 (CHE687Q) /CSM/CH/CHE6-D/CHE687Q.Seq.d/                       1148   0.0
AHI342 (AHI342Q) /CSM/AH/AHI3-B/AHI342Q.Seq.d/                       1148   0.0
AHA181 (AHA181Q) /CSM/AH/AHA1-D/AHA181Q.Seq.d/                       1148   0.0
AFG346 (AFG346Q) /CSM/AF/AFG3-B/AFG346Q.Seq.d/                       1148   0.0
VHH681 (VHH681Q) /CSM/VH/VHH6-D/VHH681Q.Seq.d/                       1144   0.0
SHJ269 (SHJ269Q) /CSM/SH/SHJ2-C/SHJ269Q.Seq.d/                       1142   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AL844505|AL844505.1 Plasmodium falciparum chromosome  6.           40   2e-06  29
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    40   2e-06  19
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.           42   2e-06  26
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    42   5e-06  22
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    42   7e-06  20
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.    32   7e-05  16
AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence.    32   2e-04  12
BJ615522|BJ615522.1 Xenopus laevis cDNA clone:XL172g12, 5' end.    50   4e-04  2
AC141778|AC141778.1 Apis mellifera clone CH224-59E17, WORKING DRAFT SEQUENCE, 12 unordered pieces.    42   4e-04  9
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence.    34   5e-04  13

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC005142_1(BC005142|pid:none) Homo sapiens adaptor-related prote...   240   9e-62
BC010065_1(BC010065|pid:none) Homo sapiens adaptor-related prote...   240   9e-62
AB384738_1(AB384738|pid:none) Synthetic construct DNA, clone: pF...   240   9e-62
(O14617) RecName: Full=AP-3 complex subunit delta-1; AltName: Fu...   240   9e-62
AB015979_1(AB015979|pid:none) Bos taurus mRNA for adaptor relate...   238   4e-61
AK141789_1(AK141789|pid:none) Mus musculus 9 days embryo whole b...   238   5e-61
AK155518_1(AK155518|pid:none) Mus musculus NOD-derived CD11c +ve...   238   5e-61
(O54774) RecName: Full=AP-3 complex subunit delta-1; AltName: Fu...   238   5e-61
BC037477_1(BC037477|pid:none) Mus musculus adaptor-related prote...   238   5e-61
BC154680_1(BC154680|pid:none) Xenopus tropicalis adaptor-related...   236   2e-60

 psg: 0.67  gvh: 0.42  alm: 0.43  top: 0.53  tms: 0.00  mit: 0.28  mip: 0.00
 nuc: 0.06  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 36.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: peroxisomal

>> prediction for SFH459 is nuc

>SFH459F.Seq
ATTCACCAAAAACTATTGAAAATGTTTGAAAGAACATTGGTTGACCTCATCAGAGGTATT
AGAAACCATAAAAAGAATGAAACTAAATTTATAAATCAATGTATAAATGAAATTAAAGAA
GAATTAAAAGGTGATATGCAAAAAAAAACAGTTGCCGTCCAAAAATTAACATATATTCAA
ATGTTAGGATTTGATATTAGTTGGGCATCATTTAAAATTGTTGAAGTTATGAGTTGTAAT
AAATTTTCATCAAAAAGAATTGGATATTTAGCAGCATCACAAAGTTTTAATGAAGGAACA
GATGTTATTGTATTGGCAACTCATCAAATTAGAAAGGATTTCTTATCATCGAATCAAAGT
GAAGCCTATTTAGCATTGAATTGTCTTTCAAATATTTGTACAACCGATTTAGCAAGAGAG
TTGGCAAATGATATCCTAACATTATTGAGTACACAAAAAACACATATTTTAAAGAGAGCC
ATCACGGTGTTATATAAGATATTCTTGAGATATCCAGAATCGCTAAGACCAGCATTCCCA
AAGTTAAGAGAGAAATTGGATGATCCCGAGCCATCGGTTGTATCATGCTCAGTCAATGTG
ATTTGC----------

>SFH459Z.Seq
----------CTTGTGCAAAAGCAAACGGTGACAAAATCCCATCATTAGACGATGATGAT
GAGGAAGAGGAAGCACAAGAAGAAGAGGACCAAAATGAAATCACTCATGAAATCGTTCAA
GAATGTCTTGAAATTATTAAATCACGTTTAACAATTTTCACTCATAGTATTTACCTAAAT
GTACAAGAACGTGCTTGTCTTATTAATGAATTATTATCATTCTACACAGTCACTAAAGAA
CAAGGTAATAATATTTCAAAGGAGTTAATTTCATTGTTCACAGAACAATTGAATCCAGTT
GGTCCAAAAGCTCAAAAGAAAGTACCAATTCCAGAAGGTTTAGATTTAGATGAATGGATT
AATGATCCAAAACATCAAGAACCAATTGAAGAGGATGAAGATGATGATATTTTCAATACA
AGTACATCTAGTCATCAAAAGAAACATCACAAACATCACCGTGGAGGATATGATGGTGAT
GATGATGAAGATGATGAAACCAATAGTTCTCATTCAGGTCATTCAAGTAGTAATTTCAAT
CGTCATCCAATTGATATTCAAAGACAAAAGGAAGAAAGATTAAGAAAACAAGCTAATAAT
CCATATATGTTGGGTGGTAAAGTATCAAAGAAATTATCAACCAATGATCCTGAAAATATT
CCAGTGGTTCAACTAACTGGTNATTTAGGTCATCTTCATGTTGGTGCATCATCAAATAGA
CCAATGCCATCAAAAGGG

>SFH459P.Seq
ATTCACCAAAAACTATTGAAAATGTTTGAAAGAACATTGGTTGACCTCATCAGAGGTATT
AGAAACCATAAAAAGAATGAAACTAAATTTATAAATCAATGTATAAATGAAATTAAAGAA
GAATTAAAAGGTGATATGCAAAAAAAAACAGTTGCCGTCCAAAAATTAACATATATTCAA
ATGTTAGGATTTGATATTAGTTGGGCATCATTTAAAATTGTTGAAGTTATGAGTTGTAAT
AAATTTTCATCAAAAAGAATTGGATATTTAGCAGCATCACAAAGTTTTAATGAAGGAACA
GATGTTATTGTATTGGCAACTCATCAAATTAGAAAGGATTTCTTATCATCGAATCAAAGT
GAAGCCTATTTAGCATTGAATTGTCTTTCAAATATTTGTACAACCGATTTAGCAAGAGAG
TTGGCAAATGATATCCTAACATTATTGAGTACACAAAAAACACATATTTTAAAGAGAGCC
ATCACGGTGTTATATAAGATATTCTTGAGATATCCAGAATCGCTAAGACCAGCATTCCCA
AAGTTAAGAGAGAAATTGGATGATCCCGAGCCATCGGTTGTATCATGCTCAGTCAATGTG
ATTTGC----------CTTGTGCAAAAGCAAACGGTGACAAAATCCCATCATTAGACGAT
GATGATGAGGAAGAGGAAGCACAAGAAGAAGAGGACCAAAATGAAATCACTCATGAAATC
GTTCAAGAATGTCTTGAAATTATTAAATCACGTTTAACAATTTTCACTCATAGTATTTAC
CTAAATGTACAAGAACGTGCTTGTCTTATTAATGAATTATTATCATTCTACACAGTCACT
AAAGAACAAGGTAATAATATTTCAAAGGAGTTAATTTCATTGTTCACAGAACAATTGAAT
CCAGTTGGTCCAAAAGCTCAAAAGAAAGTACCAATTCCAGAAGGTTTAGATTTAGATGAA
TGGATTAATGATCCAAAACATCAAGAACCAATTGAAGAGGATGAAGATGATGATATTTTC
AATACAAGTACATCTAGTCATCAAAAGAAACATCACAAACATCACCGTGGAGGATATGAT
GGTGATGATGATGAAGATGATGAAACCAATAGTTCTCATTCAGGTCATTCAAGTAGTAAT
TTCAATCGTCATCCAATTGATATTCAAAGACAAAAGGAAGAAAGATTAAGAAAACAAGCT
AATAATCCATATATGTTGGGTGGTAAAGTATCAAAGAAATTATCAACCAATGATCCTGAA
AATATTCCAGTGGTTCAACTAACTGGTNATTTAGGTCATCTTCATGTTGGTGCATCATCA
AATAGACCAATGCCATCAAAAGGG