SFH450
Library SF
(Link to library)
Clone ID SFH450
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13857-1
Original site URL
Representative seq. ID SFH450F
(Link to Original site)
Representative DNA sequence
>SFH450 (SFH450Q) /CSM/SF/SFH4-C/SFH450Q.Seq.d/
TATTGGTTGGAACGATGATAATGATTATATTTTTATGTTTAGAGGCAACATTTGATCAAC
CATATCATTCAATTGGTGGATTTATTATAGTTTGTAGTGGTTATCAACTTGGTCAAGGTA
TTGCAGGTGGTGCATTCTCTGGTATCATTCCAGATGTTGTACATCCTTCACAATCTGGTA
TTGCAAGTGGTTGGTTAGGTGTTGGTTTTTCATTGGGTCTATTGATTGGTACAATTTTGT
TTGGTACTTTATTAGAAGTGAAAAATGTAATTCATACATGGTATTTGTATGGTGCAACCA
TTGCCTTCCTTGGTATTTCCGCATTGATCACCATCTGTACAATGCATGAAGATTCTAATG
ATGAATGGTCATTCGATGGTAGTTTACCAAGTTTCTTCAAATCTTTGCATCTCCCATCAA
GTATCTATTTCAACTTTTATTGGGTCTTAATCACCCGTTTCTTCAATACACTTGGTATCT
ACATGATCTTTAGTTTCTTGTTATATTTCGCCACTGATATCATTGGTCAAACGAATTTAA
TGACAAATAGTTATATCATAGTGGTGTTGGTCATGTGTTCCATACCCGCTTCAATCGCTG
GTGGTTATTTAGCTGATTTTTACXXXXXXXXXX
sequence update 2001. 6. 1
Translated Amino Acid sequence
LVGTMIMIIFLCLEATFDQPYHSIGGFIIVCSGYQLGQGIAGGAFSGIIPDVVHPSQSGI
ASGWLGVGFSLGLLIGTILFGTLLEVKNVIHTWYLYGATIAFLGISALITICTMHEDSND
EWSFDGSLPSFFKSLHLPSSIYFNFYWVLITRFFNTLGIYMIFSFLLYFATDIIGQTNLM
TNSYIIVVLVMCSIPASIAGGYLADF---


Translated Amino Acid sequence (All Frames)
Frame A:
ywler***lyfyv*rqhlinhiiqlvdll*fvvvinlvkvlqvvhslvsfqmlyilhnlv
lqvvg*vlvfhwvy*lvqfclvly*k*km*fihgicmvqplpslvfph*spsvqcmkilm
mnghsmvvyqvssnlcishqvsistfigs*spvssihlvst*slvscyisplislvkri*
*qivis*wcwscvpyplqslvvi*lif---


Frame B:
igwnddndyifmfrgni*stisfnwwiyysl*wlstwsrycrwcilwyhsrcctsftiwy
ckwlvrcwffigsidwynfvwyfirsekcnsymvfvwcnhclpwyfridhhlyna*rf**
*mvirw*ftkflqifaspikylfqlllglnhpflqytwylhdl*flvifrh*yhwsnefn
dk*lyhsgvghvfhtrfnrwwlfs*fl---


Frame C:
LVGTMIMIIFLCLEATFDQPYHSIGGFIIVCSGYQLGQGIAGGAFSGIIPDVVHPSQSGI
ASGWLGVGFSLGLLIGTILFGTLLEVKNVIHTWYLYGATIAFLGISALITICTMHEDSND
EWSFDGSLPSFFKSLHLPSSIYFNFYWVLITRFFNTLGIYMIFSFLLYFATDIIGQTNLM
TNSYIIVVLVMCSIPASIAGGYLADF---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SFH450 (SFH450Q) /CSM/SF/SFH4-C/SFH450Q.Seq.d/ 1235 0.0
SFK429 (SFK429Q) /CSM/SF/SFK4-B/SFK429Q.Seq.d/ 850 0.0
AFF845 (AFF845Q) /CSM/AF/AFF8-B/AFF845Q.Seq.d/ 819 0.0
AFG890 (AFG890Q) /CSM/AF/AFG8-D/AFG890Q.Seq.d/ 771 0.0
SLH171 (SLH171Q) /CSM/SL/SLH1-C/SLH171Q.Seq.d/ 751 0.0
SFK377 (SFK377Q) /CSM/SF/SFK3-D/SFK377Q.Seq.d/ 605 e-172
AFM487 (AFM487Q) /CSM/AF/AFM4-D/AFM487Q.Seq.d/ 392 e-108
AFJ322 (AFJ322Q) /CSM/AF/AFJ3-A/AFJ322Q.Seq.d/ 347 1e-94
SFH516 (SFH516Q) /CSM/SF/SFH5-A/SFH516Q.Seq.d/ 321 7e-87
SSL423 (SSL423Q) /CSM/SS/SSL4-A/SSL423Q.Seq.d/ 303 2e-81

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AL359812|AL359812.3 Human DNA sequence *** SEQUENCING CANCELLED *** from clone RP11-488I3. 42 0.060 6
AC091314|AC091314.3 Mus musculus clone RP23-57B2, WORKING DRAFT SEQUENCE, 17 unordered pieces. 48 0.15 1
AL731678|AL731678.17 Mouse DNA sequence from clone RP23-39H12 on chromosome X. 48 0.15 1
AZ341634|AZ341634.1 1M0074E08F Mouse 10kb plasmid UUGC1M library Mus musculus genomic clone UUGC1M0074E08 F, DNA sequence. 48 0.15 1
AL021811|AL021811.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F10M6 (ESSAII project). 46 0.58 1
AL771720|AL771720.1 Arabidopsis thaliana T-DNA flanking sequence GK-182F07-013613. 46 0.58 1
AJ524552|AJ524552.1 Arabidopsis thaliana T-DNA flanking sequence, left border, clone 077B03. 46 0.58 1
AX508477|AX508477.1 Sequence 3172 from Patent WO0216655. 46 0.58 1
AL161580|AL161580.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 76. 46 0.58 1
AC120174|AC120174.3 Mus musculus clone RP24-492O15, WORKING DRAFT SEQUENCE, 7 unordered pieces. 36 0.71 5
dna update 2003.12.30
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

A75444(A75444) hypothetical protein - Deinococcus radiodurans (s... 59 1e-07
CR936503_1787(CR936503|pid:none) Lactobacillus sakei strain 23K ... 40 0.053
CP001339_291(CP001339|pid:none) Thioalkalivibrio sp. HL-EbGR7, c... 38 0.20
AE017221_1787(AE017221|pid:none) Thermus thermophilus HB27, comp... 37 0.34
AM910991_170(AM910991|pid:none) Plasmodium knowlesi strain H chr... 37 0.35
CP000474_3686(CP000474|pid:none) Arthrobacter aurescens TC1, com... 37 0.59
AB373032_31(AB373032|pid:none) Staphylococcus aureus DNA, type 5... 37 0.59
CP000255_104(CP000255|pid:none) Staphylococcus aureus subsp. aur... 35 1.3
CP000730_109(CP000730|pid:none) Staphylococcus aureus subsp. aur... 35 1.3
CP001341_3726(CP001341|pid:none) Arthrobacter chlorophenolicus A... 35 1.7
protein update 2009. 5.25
PSORT

psg: 1.01 gvh: 0.49 alm: 0.25 top: 0.37 tms: 0.33 mit: 0.15 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 1.00 m3b: 0.00 m_ : 0.00

36.0 %: endoplasmic reticulum
28.0 %: plasma membrane
12.0 %: mitochondrial
8.0 %: extracellular, including cell wall
4.0 %: Golgi
4.0 %: vacuolar
4.0 %: nuclear
4.0 %: vesicles of secretory system

>> prediction for SFH450 is end

5' end seq. ID SFH450F
5' end seq.
>SFH450F.Seq
TATTGGTTGGAACGATGATAATGATTATATTTTTATGTTTAGAGGCAACATTTGATCAAC
CATATCATTCAATTGGTGGATTTATTATAGTTTGTAGTGGTTATCAACTTGGTCAAGGTA
TTGCAGGTGGTGCATTCTCTGGTATCATTCCAGATGTTGTACATCCTTCACAATCTGGTA
TTGCAAGTGGTTGGTTAGGTGTTGGTTTTTCATTGGGTCTATTGATTGGTACAATTTTGT
TTGGTACTTTATTAGAAGTGAAAAATGTAATTCATACATGGTATTTGTATGGTGCAACCA
TTGCCTTCCTTGGTATTTCCGCATTGATCACCATCTGTACAATGCATGAAGATTCTAATG
ATGAATGGTCATTCGATGGTAGTTTACCAAGTTTCTTCAAATCTTTGCATCTCCCATCAA
GTATCTATTTCAACTTTTATTGGGTCTTAATCACCCGTTTCTTCAATACACTTGGTATCT
ACATGATCTTTAGTTTCTTGTTATATTTCGCCACTGATATCATTGGTCAAACGAATTTAA
TGACAAATAGTTATATCATAGTGGTGTTGGTCATGTGTTCCATACCCGCTTCAATCGCTG
GTGGTTATTTAGCTGATTTTTAC----------
Length of 5' end seq. 623
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -