SFH339
Library SF
(Link to library)
Clone ID SFH339
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16252-1
Original site URL
Representative seq. ID SFH339P
(Link to Original site)
Representative DNA sequence
>SFH339 (SFH339Q) /CSM/SF/SFH3-B/SFH339Q.Seq.d/
ATCTCTATCTATATATATATCATTTTTTAAAATGAGCGTCATCAAATCAATTAAAGCCAG
AGAAATTTTAGATTCACGTGGTAACCCAACTGTTGAAGTTGACCTTTACACCGAAAAAGA
TGGTGTTGTTTCATCATTCAGAGCTGCAGTTCCATCAGGTGCATCAACTGGTATTTATGA
AGCTGTTGAATTAAGAGATGGTGATAAATCAAGATACTTAGGTAAAGGTGTACTCAAAGC
AATCAAAAACATTCTCGAAGTCATTCAACCAGCCGTCATTGGTAAATCAGTTTCCGATCA
AGCTGCTATCGATAAATTAATGATCGATCTCGATGGTACCCCAAATAAAGGTAAATTAGG
TGCCAACGCTATCCTTGCAGTCAGTTTAGCTGTTTGCAGAGCTGGTGCTGCTGATAGAAA
TTTACCACTTTACAAATATATCTCAGAAATTGCAGGTACTAAAATGAGATTACCAGTTCC
AGCATTCAATGTTATCAATGGTGGTTCACATGCAGGTAATAAATTAGCTATGCAAGAATT
TATGATTTTACCAGTTGGTGCTAAAGATTTCAATGAAGCCTATCGTATGGGTTCAGAAGT
TTATCATAACTTAAAGAATGTCATCAGTGGTAGATACGGXXXXXXXXXXAAGAATGTCAT
CAGTGGTAGATACGGTCAAGATGCTATCAATGTTGGTGATGAAGGTGGTTTCGCTCCACC
AATTCAAAGCAACAAAGAAGGTCTTGAACTCTTAAAACTTGCCATTGAAAAAGCTGGTTA
CACAGGTTTAGTTAAAATTGGTATGGATTGTGCTGCCTCTGAATTCAAAGTTGAAAATGG
TTACGATCTTGACTTCAAAACTAAAAACAATGACGGTTCAGCTGTTATCTCTGGTGAAAA
ATTAGGTGATCTCTACAGAGAATTCATTAAAGAATATCCAATCATTTCAATTGAAGATCC
ATTTGATCAAGATGATTGGGAATCATACACTAAATTAACAGCATCAGTTGATATTCAAAT
TGTTGGTGATGATTTACTTGTTACCAACCCAGAAAGAATTAAGACTGGTATTGAAAAGAA
AGCATGTAATGCTCTTTTATTAAAAGTTAACCAAATTGGTTCAGTCACTGAATCAATTCG
TGCCGCTCTTGACTCAAAGAATGCATCATGGGGTGTCATGGTTAGCCATCGTTCAGGTGA
AACTGAAGATACCTTCATTGCTGATTTAGTTGTTGGTTTAGGTACTGGTCAAATTAAAAC
TGGTGCTCCATGTAGATCAGAAAGATTAGCCAAATACAATCAACTTGTTAGAATTAACGA
AGAGTTAGGTGAAAACCATAACTATGCGGTTTAACTTTCCGTAAATTTTAATTTTACTCA
TAATATGNAAACAAAAC
sequence update 2001. 6. 1
Translated Amino Acid sequence
SLSIYISFFKMSVIKSIKAREILDSRGNPTVEVDLYTEKDGVVSSFRAAVPSGASTGIYE
AVELRDGDKSRYLGKGVLKAIKNILEVIQPAVIGKSVSDQAAIDKLMIDLDGTPNKGKLG
ANAILAVSLAVCRAGAADRNLPLYKYISEIAGTKMRLPVPAFNVINGGSHAGNKLAMQEF
MILPVGAKDFNEAYRMGSEVYHNLKNVISGRY---

---KNVISGRYGQDAINVGDEGGFAPPIQSNKEGLELLKLAIEKAGYTGLVKIGMDCAAS
EFKVENGYDLDFKTKNNDGSAVISGEKLGDLYREFIKEYPIISIEDPFDQDDWESYTKLT
ASVDIQIVGDDLLVTNPERIKTGIEKKACNALLLKVNQIGSVTESIRAALDSKNASWGVM
VSHRSGETEDTFIADLVVGLGTGQIKTGAPCRSERLAKYNQLVRINEELGENHNYAV*ls
vnfnfthnmxtk


Translated Amino Acid sequence (All Frames)
Frame A:
isiyiyiif*nerhqin*sqrnfrftw*pnc*s*plhrkrwccfiiqscssircinwyl*
sc*ikrw**ikilr*rctqsnqkhsrshstsrhw*isfrsscyr*indrsrwypk*r*ir
cqrypcsqfsclqswcc**kfttlqiylrncry*neitsssiqcyqwwftcr**isyari
ydftswc*rfq*slsygfrsls*lkechqw*ir---

---KNVISGRYGQDAINVGDEGGFAPPIQSNKEGLELLKLAIEKAGYTGLVKIGMDCAAS
EFKVENGYDLDFKTKNNDGSAVISGEKLGDLYREFIKEYPIISIEDPFDQDDWESYTKLT
ASVDIQIVGDDLLVTNPERIKTGIEKKACNALLLKVNQIGSVTESIRAALDSKNASWGVM
VSHRSGETEDTFIADLVVGLGTGQIKTGAPCRSERLAKYNQLVRINEELGENHNYAV*ls
vnfnfthnmxtk

Frame B:
SLSIYISFFKMSVIKSIKAREILDSRGNPTVEVDLYTEKDGVVSSFRAAVPSGASTGIYE
AVELRDGDKSRYLGKGVLKAIKNILEVIQPAVIGKSVSDQAAIDKLMIDLDGTPNKGKLG
ANAILAVSLAVCRAGAADRNLPLYKYISEIAGTKMRLPVPAFNVINGGSHAGNKLAMQEF
MILPVGAKDFNEAYRMGSEVYHNLKNVISGRY---

---rmssvvdtvkmlsmlvmkvvslhqfkatkkvlns*nlplkklvtqv*lklvwivlpl
nsklkmvtiltsklktmtvqllslvkn*vistenslkniqsfqlkihlikmignhtln*q
hqlifkllvmiyllptqkelrlvlkrkhvmlfy*kltklvqslnqfvplltqrmhhgvsw
laivqvklkipslli*llv*vlvklklvlhvdqkd*pntinlleltks*vktitmrfnfp
*ililliixkqn

Frame C:
lylyiyhflk*assnqlkpekf*ihvvtqllkltftpkkmvlfhhselqfhqvhqlvfmk
lln*emvinqdt*vkvyskqsktfsksfnqpslvnqfpikllsin**sismvpqikvn*v
ptlslqsv*lfaelvllieiyhftnisqklqvlk*dyqfqhsmlsmvvhmqvin*lcknl
*fyqlvlkismkpivwvqkfiit*rmssvvdt---

---echqw*irsrcyqcw**rwfrstnskqqrrs*tlktch*kswlhrfs*nwyglccl*
iqs*kwlrs*lqn*kq*rfscylw*kir*slqrih*risnhfn*rsi*sr*lgiih*ins
is*ysncw**ftcyqprkn*dwy*kesm*csfiks*pnwfsh*inscrs*lkecimgchg
*psfr*n*rylhc*fscwfrywsn*nwcsm*irkisqiqstc*n*rrvr*kp*lcgltfr
kf*fys*yxnk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SFH339 (SFH339Q) /CSM/SF/SFH3-B/SFH339Q.Seq.d/ 2704 0.0
SFE744 (SFE744Q) /CSM/SF/SFE7-B/SFE744Q.Seq.d/ 1463 0.0
SFC169 (SFC169Q) /CSM/SF/SFC1-C/SFC169Q.Seq.d/ 1461 0.0
AFK881 (AFK881Q) /CSM/AF/AFK8-D/AFK881Q.Seq.d/ 1459 0.0
VFE233 (VFE233Q) /CSM/VF/VFE2-B/VFE233Q.Seq.d/ 1457 0.0
CHB226 (CHB226Q) /CSM/CH/CHB2-B/CHB226Q.Seq.d/ 1457 0.0
AFN685 (AFN685Q) /CSM/AF/AFN6-D/AFN685Q.Seq.d/ 1457 0.0
AFG692 (AFG692Q) /CSM/AF/AFG6-D/AFG692Q.Seq.d/ 1457 0.0
AFC723 (AFC723Q) /CSM/AF/AFC7-A/AFC723Q.Seq.d/ 1455 0.0
SSI448 (SSI448Q) /CSM/SS/SSI4-B/SSI448Q.Seq.d/ 1449 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

X80474|X80474.1 N.frontalis enolase gene. 64 1e-76 13
Y17298|Y17298.1 Cunninghamella elegans mRNA for enolase. 86 2e-75 12
BD183626|BD183626.1 Material for diagnosing malaria and immune antigen for suppressing growth of plasmodium. 76 1e-62 10
BD183625|BD183625.1 Material for diagnosing malaria and immune antigen for suppressing growth of plasmodium. 76 1e-62 10
AB026051|AB026051.1 Plasmodium falciparum mRNA for enolase, complete cds. 76 1e-62 10
U00152|U00152.1 Plasmodium falciparum enolase gene complete cds. 76 1e-60 9
BM165201|BM165201.1 EST567724 PyBS Plasmodium yoelii yoelii cDNA clone PYCMI87 5' end, mRNA sequence. 92 1e-53 5
AF348930|AF348930.1 Tetrahymena bergeri enolase (eno) gene, partial cds. 66 2e-51 7
BM395755|BM395755.1 5009-0-10-H08.t.1 Chilcoat/Turkewitz cDNA (large fraction) Tetrahymena thermophila cDNA, mRNA sequence. 121 3e-48 5
AX619982|AX619982.1 Sequence 2945 from Patent WO02094868. 50 6e-47 10
dna update 2003.12.30
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54RK5) RecName: Full=Enolase A; EC=4.2.1.11; AltName:... 827 0.0
EF137905_1(EF137905|pid:none) Helianthus annuus plastid enolase ... 601 e-170
AC016662_10(AC016662|pid:none) Arabidopsis thaliana chromosome 1... 590 e-167
DQ497988_1(DQ497988|pid:none) Polypterus senegalus enolase B mRN... 582 e-165
AK243111_1(AK243111|pid:none) Oryza sativa Japonica Group cDNA, ... 580 e-164
BC045082_1(BC045082|pid:none) Xenopus laevis enolase 3, beta mus... 580 e-164
BC096516_1(BC096516|pid:none) Xenopus tropicalis hypothetical pr... 579 e-164
T12341(T12341) phosphopyruvate hydratase (EC 4.2.1.11) - common ... 577 e-163
(Q43130) RecName: Full=Enolase; EC=4.2.1.11; AltName: F... 577 e-163
EU964132_1(EU964132|pid:none) Zea mays clone 276124 enolase mRNA... 576 e-163
protein update 2009. 5.25
PSORT

psg: 0.71 gvh: 0.46 alm: 0.36 top: 0.53 tms: 0.00 mit: 0.33 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: cytoplasmic
36.0 %: nuclear
24.0 %: mitochondrial

>> prediction for SFH339 is cyt

5' end seq. ID SFH339F
5' end seq.
>SFH339F.Seq
ATCTCTATCTATATATATATCATTTTTTAAAATGAGCGTCATCAAATCAATTAAAGCCAG
AGAAATTTTAGATTCACGTGGTAACCCAACTGTTGAAGTTGACCTTTACACCGAAAAAGA
TGGTGTTGTTTCATCATTCAGAGCTGCAGTTCCATCAGGTGCATCAACTGGTATTTATGA
AGCTGTTGAATTAAGAGATGGTGATAAATCAAGATACTTAGGTAAAGGTGTACTCAAAGC
AATCAAAAACATTCTCGAAGTCATTCAACCAGCCGTCATTGGTAAATCAGTTTCCGATCA
AGCTGCTATCGATAAATTAATGATCGATCTCGATGGTACCCCAAATAAAGGTAAATTAGG
TGCCAACGCTATCCTTGCAGTCAGTTTAGCTGTTTGCAGAGCTGGTGCTGCTGATAGAAA
TTTACCACTTTACAAATATATCTCAGAAATTGCAGGTACTAAAATGAGATTACCAGTTCC
AGCATTCAATGTTATCAATGGTGGTTCACATGCAGGTAATAAATTAGCTATGCAAGAATT
TATGATTTTACCAGTTGGTGCTAAAGATTTCAATGAAGCCTATCGTATGGGTTCAGAAGT
TTATCATAACTTAAAGAATGTCATCAGTGGTAGATACGG----------
Length of 5' end seq. 639
3' end seq. ID SFH339Z
3' end seq.
>SFH339Z.Seq
----------AAGAATGTCATCAGTGGTAGATACGGTCAAGATGCTATCAATGTTGGTGA
TGAAGGTGGTTTCGCTCCACCAATTCAAAGCAACAAAGAAGGTCTTGAACTCTTAAAACT
TGCCATTGAAAAAGCTGGTTACACAGGTTTAGTTAAAATTGGTATGGATTGTGCTGCCTC
TGAATTCAAAGTTGAAAATGGTTACGATCTTGACTTCAAAACTAAAAACAATGACGGTTC
AGCTGTTATCTCTGGTGAAAAATTAGGTGATCTCTACAGAGAATTCATTAAAGAATATCC
AATCATTTCAATTGAAGATCCATTTGATCAAGATGATTGGGAATCATACACTAAATTAAC
AGCATCAGTTGATATTCAAATTGTTGGTGATGATTTACTTGTTACCAACCCAGAAAGAAT
TAAGACTGGTATTGAAAAGAAAGCATGTAATGCTCTTTTATTAAAAGTTAACCAAATTGG
TTCAGTCACTGAATCAATTCGTGCCGCTCTTGACTCAAAGAATGCATCATGGGGTGTCAT
GGTTAGCCATCGTTCAGGTGAAACTGAAGATACCTTCATTGCTGATTTAGTTGTTGGTTT
AGGTACTGGTCAAATTAAAACTGGTGCTCCATGTAGATCAGAAAGATTAGCCAAATACAA
TCAACTTGTTAGAATTAACGAAGAGTTAGGTGAAAACCATAACTATGCGGTTTAACTTTC
CGTAAATTTTAATTTTACTCATAATATGNAAACAAAAC
Length of 3' end seq. 748
Connected seq. ID SFH339P
Connected seq.
>SFH339P.Seq
ATCTCTATCTATATATATATCATTTTTTAAAATGAGCGTCATCAAATCAATTAAAGCCAG
AGAAATTTTAGATTCACGTGGTAACCCAACTGTTGAAGTTGACCTTTACACCGAAAAAGA
TGGTGTTGTTTCATCATTCAGAGCTGCAGTTCCATCAGGTGCATCAACTGGTATTTATGA
AGCTGTTGAATTAAGAGATGGTGATAAATCAAGATACTTAGGTAAAGGTGTACTCAAAGC
AATCAAAAACATTCTCGAAGTCATTCAACCAGCCGTCATTGGTAAATCAGTTTCCGATCA
AGCTGCTATCGATAAATTAATGATCGATCTCGATGGTACCCCAAATAAAGGTAAATTAGG
TGCCAACGCTATCCTTGCAGTCAGTTTAGCTGTTTGCAGAGCTGGTGCTGCTGATAGAAA
TTTACCACTTTACAAATATATCTCAGAAATTGCAGGTACTAAAATGAGATTACCAGTTCC
AGCATTCAATGTTATCAATGGTGGTTCACATGCAGGTAATAAATTAGCTATGCAAGAATT
TATGATTTTACCAGTTGGTGCTAAAGATTTCAATGAAGCCTATCGTATGGGTTCAGAAGT
TTATCATAACTTAAAGAATGTCATCAGTGGTAGATACGG----------AAGAATGTCAT
CAGTGGTAGATACGGTCAAGATGCTATCAATGTTGGTGATGAAGGTGGTTTCGCTCCACC
AATTCAAAGCAACAAAGAAGGTCTTGAACTCTTAAAACTTGCCATTGAAAAAGCTGGTTA
CACAGGTTTAGTTAAAATTGGTATGGATTGTGCTGCCTCTGAATTCAAAGTTGAAAATGG
TTACGATCTTGACTTCAAAACTAAAAACAATGACGGTTCAGCTGTTATCTCTGGTGAAAA
ATTAGGTGATCTCTACAGAGAATTCATTAAAGAATATCCAATCATTTCAATTGAAGATCC
ATTTGATCAAGATGATTGGGAATCATACACTAAATTAACAGCATCAGTTGATATTCAAAT
TGTTGGTGATGATTTACTTGTTACCAACCCAGAAAGAATTAAGACTGGTATTGAAAAGAA
AGCATGTAATGCTCTTTTATTAAAAGTTAACCAAATTGGTTCAGTCACTGAATCAATTCG
TGCCGCTCTTGACTCAAAGAATGCATCATGGGGTGTCATGGTTAGCCATCGTTCAGGTGA
AACTGAAGATACCTTCATTGCTGATTTAGTTGTTGGTTTAGGTACTGGTCAAATTAAAAC
TGGTGCTCCATGTAGATCAGAAAGATTAGCCAAATACAATCAACTTGTTAGAATTAACGA
AGAGTTAGGTGAAAACCATAACTATGCGGTTTAACTTTCCGTAAATTTTAATTTTACTCA
TAATATGNAAACAAAAC
Length of connected seq. 1387
Full length Seq ID -
Full length Seq. -
Length of full length seq. -