SFH333 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

SFH333
Library	SF (Link to library)
Clone ID	SFH333 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U16471-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/SF/SFH3-B/SFH333Q.Seq.d/
Representative seq. ID	SFH333P (Link to Original site)
Representative DNA sequence	>SFH333 (SFH333Q) /CSM/SF/SFH3-B/SFH333Q.Seq.d/ CTACGGTTCAATTCCATCACAAGATAATGAAGAAATTAAAAAGAGATTACAAAGTGCTCA TCAACAATTACAAGAACAATCACCTGCAATCTATCAATCAATGAAATCTGAAGATCTAAA AAATTTAGATGATGAAGTAATTCGTAATACTCTTAAGGAAATGCAAATTCAACGTGAAAA TCAAGATATTGGTCAACAAAATCAAGAAGATAAAGAACAATTAATTGATTTACAAAATAG AGAACCTGGTTTATACAAAAATCAACAAGATCTTAAACAAGAGAAAAGAGCCAATCAACA AGAATTAATCAATTATGAATTGAATTTACAAGAAGATCAAGAACAATATGAACTTTTATT AGATCAACCTCTATGATGAACAACAACAACAACCACAAAAAGTTTCAAATAAACAACAAC TTCAAGAACAACAAATTAATTCACCCGAGGATATTCAATATCAATTAAATCATTTAAATC AACCATTCCAAGATGACTATCATAATGATCAAACTGAAGAATTAAAAGATGATGATTATA ATTTTAATGATCAACXXXXXXXXXXTGAAGAAATTGAAAGACAACAAAATGGTAATGGTT CACCTGCTGTAAACTCTCATAAGATTGTAACTCAAATGGGAAATGTTGAAAATAATGAAA TTACCAATGAACAAGATGCCATTGAACAAGCTCAACATTTACAACGTATTGAAAATGGTG AAGATATCGATGAGTATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAAATGAAC AAGATGCTGCTAAATTACAAAATGAAATGGACCAATTAGAACTCTTACTTGAAGAGAATG AAGAAGAACAATTTTCAAATAAAAATTTACAACAACTTAATGAGAATGAAAATCAACAAC AACAACAAGGACAACAACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTGAACAAC TTAAAGTTATCAAAGAATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCAACAAG AGAACGATGCTGTCTACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATGCTGAAT TGGCTAAAAATAATAAACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAACAACAAT CTCCTGACCAAATTAAAAATCAATTAAAAAATATTCAACATGAACAACAAATCCAAGAAC AACAAGATAAATTAAATCAAGAAAAAAATCAACAATTATTAGAACAAGAACAAAATCAAA AATAATTTAATCATTCTTTCTTTTTAAAAAACT
sequence update	2001. 6. 1
Translated Amino Acid sequence	tvqfhhkimkklkrdykvlinnyknnhlqsinqnlkikimmkfvillrkckfnvki kilvnkikkiknnliykienlvytkinkilnkrkepinknsimniykkiknnmnfy INLYDEQQQQPQKVSNKQQLQEQQINSPEDIQYQLNHLNQPFQDDYHNDQTEELKDDDYN FNDQ--- ---EEIERQQNGNGSPAVNSHKIVTQMGNVENNEITNEQDAIEQAQHLQRIENGEDIDEY EAAQHEVAFLDENEQDAAKLQNEMDQLELLLEENEEEQFSNKNLQQLNENENQQQQQGQQ QVQATNVEQQIVEQLKVIKEFQRQDQQKKQKIQQENDAVYLSDVEKAQLELDAELAKNNK QENQDENLVQEKQQSPDQIKNQLKNIQHEQQIQEQQDKLNQEKNQQLLEQEQNQK*fnhs fflkn
Translated Amino Acid sequence (All Frames)	Frame A: lrfnsitr*rnkeitkcsstitrtitcnlsineirskkfrsnsysgnanstk srywstksrrrtinftkrtwfiqkstrstreksqstrinqlieftrrsrtitfi rstsmmnnnnnhkkfqinnnfknnklihprifniniiinhskmtiimiklknkmmii ilmin--- ---rnkttkwwftccklsdcnsngkck*nyqtrchtsstfttykwryrv scptsclfrktrccitkngpirtltrerrtifkkfttteksttttrtt tsssnkcttnrttsyqrisktrstketknstrerccllecksstigcigk** tresrefssrettispnksikkystttnprttriksrkkstiirtrtkskiisf flfkk Frame B: ygsipsqdneeikkrlqsahqqlqeqspaiyqsmksedlknlddevirntlkemqiqren qdigqqnqedkeqlidlqnrepglyknqqdlkqekranqqelinyelnlqedqeqyelll dqpl*ttttttksfktttsrttnftrgysisiksfkstiprls*snrikr*l f*s--- ---EEIERQQNGNGSPAVNSHKIVTQMGNVENNEITNEQDAIEQAQHLQRIENGEDIDEY EAAQHEVAFLDENEQDAAKLQNEMDQLELLLEENEEEQFSNKNLQQLNENENQQQQQGQQ QVQATNVEQQIVEQLKVIKEFQRQDQQKKQKIQQENDAVYLSDVEKAQLELDAELAKNNK QENQDENLVQEKQQSPDQIKNQLKNIQHEQQIQEQQDKLNQEKNQQLLEQEQNQKfnhs fflkn Frame C: tvqfhhkimkklkrdykvlinnyknnhlqsinqnlkikimmkfvillrkckfnvki kilvnkikkiknnliykienlvytkinkilnkrkepinknsimniykkiknnmnfy INLYDEQQQQPQKVSNKQQLQEQQINSPEDIQYQLNHLNQPFQDDYHNDQTEELKDDDYN FNDQ--- ---kklkdnkmvmvhlltlirllkwemlkimklpmnkmplnklniynvlkmvkismsm klpnmklpfmkmnkmllnykmkwtnnsylkrmkknnfqikiynnlmrmkinnnnkdnn kfkqqmlnnkslnnlklsknfkdkinkrnkkfnkrtmlstvmlkklnlnwmlnwlkiin krikmrifkrnnnlltklkinkifnmnnksknnkinikkkinnynknkiknnliil sfkt
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value SFH333 (SFH333Q) /CSM/SF/SFH3-B/SFH333Q.Seq.d/ 848 0.0 SFK701 (SFK701Q) /CSM/SF/SFK7-A/SFK701Q.Seq.d/ 745 0.0 SFJ324 (SFJ324Q) /CSM/SF/SFJ3-A/SFJ324Q.Seq.d/ 745 0.0 CHD226 (CHD226Q) /CSM/CH/CHD2-B/CHD226Q.Seq.d/ 745 0.0 CHC215 (CHC215Q) /CSM/CH/CHC2-A/CHC215Q.Seq.d/ 745 0.0 CFH714 (CFH714Q) /CSM/CF/CFH7-A/CFH714Q.Seq.d/ 745 0.0 CFG751 (CFG751Q) /CSM/CF/CFG7-C/CFG751Q.Seq.d/ 745 0.0 CFG652 (CFG652Q) /CSM/CF/CFG6-C/CFG652Q.Seq.d/ 745 0.0 CFF619 (CFF619Q) /CSM/CF/CFF6-A/CFF619Q.Seq.d/ 745 0.0 AFN735 (AFN735Q) /CSM/AF/AFN7-B/AFN735Q.Seq.d/ 745 0.0
own update	2004.12.25
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N U25143\|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene,complete cds. 730 0.0 6 AC117075\|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence. 127 4e-36 20 AC115576\|AC115576.1 Dictyostelium discoideum chromosome 2 map 5868742-5900083 strain AX4, * SEQUENCING IN PROGRESS *, in ordered pieces. 127 6e-26 6 AC116305\|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 40 1e-18 29 AC116988\|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence. 36 5e-16 24 AC116957\|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 36 5e-14 28 AP004172\|AP004172.1 Mycoplasma penetrans genomic DNA, complete sequence, section 3/5. 34 7e-11 21 AP006628\|AP006628.1 Onion yellows phytoplasma DNA, complete genome. 36 2e-10 27 AL844507\|AL844507.1 Plasmodium falciparum chromosome 8. 42 2e-10 28 AE014850\|AE014850.1 Plasmodium falciparum 3D7 chromosome 12, section 7 of 9 of the complete sequence. 38 2e-10 17
dna update	2003.12.29
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value (P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags... 260 8e-68 (O76329) RecName: Full=Interaptin; AltName: Full=Alpha-actinin B... 42 1e-06 U52064_1(U52064\|pid:none) Kaposi's sarcoma-associated herpes-lik... 39 2e-06 AF192756_1(AF192756\|pid:none) Kaposi's sarcoma-associated herpes... 37 3e-05 AF148805_82(AF148805\|pid:none) Human herpesvirus 8 type P isolat... 38 4e-05 U93872_83(U93872\|pid:none) Kaposi's sarcoma-associated herpesvir... 39 5e-05 AF305694_1(AF305694\|pid:none) Kaposi's sarcoma-associated herpes... 47 1e-04 CR548612_223(CR548612\|pid:none) Paramecium tetraurelia macronucl... 42 1e-04 CR940347_653(CR940347\|pid:none) Theileria annulata strain Ankara... 50 2e-04 AF360120_1(AF360120\|pid:none) Human herpesvirus 8 ORF73 gene, co... 35 4e-04
protein update	2009. 5.25
PSORT	psg: 0.75 gvh: 0.14 alm: 0.58 top: 0.53 tms: 0.00 mit: 0.21 mip: 0.00 nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.50 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 44.0 %: nuclear 40.0 %: cytoplasmic 4.0 %: cytoskeletal 4.0 %: mitochondrial 4.0 %: plasma membrane 4.0 %: endoplasmic reticulum >> prediction for SFH333 is nuc
5' end seq. ID	SFH333F
5' end seq.	>SFH333F.Seq CTACGGTTCAATTCCATCACAAGATAATGAAGAAATTAAAAAGAGATTACAAAGTGCTCA TCAACAATTACAAGAACAATCACCTGCAATCTATCAATCAATGAAATCTGAAGATCTAAA AAATTTAGATGATGAAGTAATTCGTAATACTCTTAAGGAAATGCAAATTCAACGTGAAAA TCAAGATATTGGTCAACAAAATCAAGAAGATAAAGAACAATTAATTGATTTACAAAATAG AGAACCTGGTTTATACAAAAATCAACAAGATCTTAAACAAGAGAAAAGAGCCAATCAACA AGAATTAATCAATTATGAATTGAATTTACAAGAAGATCAAGAACAATATGAACTTTTATT AGATCAACCTCTATGATGAACAACAACAACAACCACAAAAAGTTTCAAATAAACAACAAC TTCAAGAACAACAAATTAATTCACCCGAGGATATTCAATATCAATTAAATCATTTAAATC AACCATTCCAAGATGACTATCATAATGATCAAACTGAAGAATTAAAAGATGATGATTATA ATTTTAATGATCAAC----------
Length of 5' end seq.	555
3' end seq. ID	SFH333Z
3' end seq.	>SFH333Z.Seq ----------TGAAGAAATTGAAAGACAACAAAATGGTAATGGTTCACCTGCTGTAAACT CTCATAAGATTGTAACTCAAATGGGAAATGTTGAAAATAATGAAATTACCAATGAACAAG ATGCCATTGAACAAGCTCAACATTTACAACGTATTGAAAATGGTGAAGATATCGATGAGT ATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAAATGAACAAGATGCTGCTAAAT TACAAAATGAAATGGACCAATTAGAACTCTTACTTGAAGAGAATGAAGAAGAACAATTTT CAAATAAAAATTTACAACAACTTAATGAGAATGAAAATCAACAACAACAACAAGGACAAC AACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTGAACAACTTAAAGTTATCAAAG AATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCAACAAGAGAACGATGCTGTCT ACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATGCTGAATTGGCTAAAAATAATA AACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAACAACAATCTCCTGACCAAATTA AAAATCAATTAAAAAATATTCAACATGAACAACAAATCCAAGAACAACAAGATAAATTAA ATCAAGAAAAAAATCAACAATTATTAGAACAAGAACAAAATCAAAAATAATTTAATCATT CTTTCTTTTTAAAAAACT
Length of 3' end seq.	728
Connected seq. ID	SFH333P
Connected seq.	>SFH333P.Seq CTACGGTTCAATTCCATCACAAGATAATGAAGAAATTAAAAAGAGATTACAAAGTGCTCA TCAACAATTACAAGAACAATCACCTGCAATCTATCAATCAATGAAATCTGAAGATCTAAA AAATTTAGATGATGAAGTAATTCGTAATACTCTTAAGGAAATGCAAATTCAACGTGAAAA TCAAGATATTGGTCAACAAAATCAAGAAGATAAAGAACAATTAATTGATTTACAAAATAG AGAACCTGGTTTATACAAAAATCAACAAGATCTTAAACAAGAGAAAAGAGCCAATCAACA AGAATTAATCAATTATGAATTGAATTTACAAGAAGATCAAGAACAATATGAACTTTTATT AGATCAACCTCTATGATGAACAACAACAACAACCACAAAAAGTTTCAAATAAACAACAAC TTCAAGAACAACAAATTAATTCACCCGAGGATATTCAATATCAATTAAATCATTTAAATC AACCATTCCAAGATGACTATCATAATGATCAAACTGAAGAATTAAAAGATGATGATTATA ATTTTAATGATCAAC----------TGAAGAAATTGAAAGACAACAAAATGGTAATGGTT CACCTGCTGTAAACTCTCATAAGATTGTAACTCAAATGGGAAATGTTGAAAATAATGAAA TTACCAATGAACAAGATGCCATTGAACAAGCTCAACATTTACAACGTATTGAAAATGGTG AAGATATCGATGAGTATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAAATGAAC AAGATGCTGCTAAATTACAAAATGAAATGGACCAATTAGAACTCTTACTTGAAGAGAATG AAGAAGAACAATTTTCAAATAAAAATTTACAACAACTTAATGAGAATGAAAATCAACAAC AACAACAAGGACAACAACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTGAACAAC TTAAAGTTATCAAAGAATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCAACAAG AGAACGATGCTGTCTACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATGCTGAAT TGGCTAAAAATAATAAACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAACAACAAT CTCCTGACCAAATTAAAAATCAATTAAAAAATATTCAACATGAACAACAAATCCAAGAAC AACAAGATAAATTAAATCAAGAAAAAAATCAACAATTATTAGAACAAGAACAAAATCAAA AATAATTTAATCATTCTTTCTTTTTAAAAAACT
Length of connected seq.	1283
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas